Wall clock time and date at job start Sun Mar 29 2020 22:03:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.32259 * 120.41727 * 2 1 4 4 C 1.32489 * 120.77129 * 180.02562 * 3 2 1 5 5 N 1.38511 * 119.18670 * 180.02562 * 4 3 2 6 6 C 1.46503 * 120.00030 * 359.97438 * 5 4 3 7 7 C 1.36976 * 120.00091 * 179.97438 * 5 4 3 8 8 H 1.07995 * 119.99863 * 22.49497 * 7 5 4 9 9 C 1.38818 * 120.00147 * 202.49815 * 7 5 4 10 10 N 1.31554 * 119.99966 * 11.08193 * 9 7 5 11 11 Si 1.86802 * 120.00063 * 191.08054 * 9 7 5 12 12 H 1.48503 * 109.46658 * 89.99998 * 11 9 7 13 13 H 1.48498 * 109.47331 * 209.99706 * 11 9 7 14 14 H 1.48492 * 109.47077 * 330.00322 * 11 9 7 15 15 N 1.32525 * 121.62519 * 0.02562 * 4 3 2 16 16 C 1.32223 * 120.77084 * 0.02562 * 15 4 3 17 17 C 1.38834 * 120.41399 * 180.02562 * 2 1 3 18 18 F 1.35090 * 120.75323 * 0.24618 * 17 2 1 19 19 H 1.09000 * 109.46903 * 269.97058 * 1 2 3 20 20 H 1.08993 * 109.47121 * 29.97303 * 1 2 3 21 21 H 1.08999 * 109.47028 * 149.97940 * 1 2 3 22 22 H 1.08996 * 109.47566 * 93.91180 * 6 5 4 23 23 H 1.09000 * 109.46993 * 213.91439 * 6 5 4 24 24 H 1.08999 * 109.47093 * 333.91114 * 6 5 4 25 25 H 0.97003 * 119.99935 * 180.02562 * 10 9 7 26 26 H 1.07998 * 120.42048 * 179.97438 * 16 15 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1767 1.1406 0.0000 4 6 3.5015 1.1487 -0.0005 5 7 4.1695 2.3621 0.0000 6 6 3.4113 3.6157 0.0006 7 6 5.5390 2.3901 0.0001 8 1 6.0965 1.5373 -0.3582 9 6 6.2103 3.5145 0.4606 10 7 5.5515 4.4599 1.0952 11 14 8.0491 3.6850 0.1792 12 1 8.2901 4.3759 -1.1130 13 1 8.6475 4.4775 1.2833 14 1 8.6715 2.3372 0.1434 15 7 4.2034 0.0246 -0.0015 16 6 3.5980 -1.1509 -0.0026 17 6 2.2099 -1.1973 -0.0005 18 9 1.5584 -2.3807 -0.0061 19 1 -0.3633 -0.0005 1.0277 20 1 -0.3633 0.8902 -0.5134 21 1 -0.3633 -0.8898 -0.5141 22 1 3.2832 3.9625 1.0260 23 1 3.9530 4.3682 -0.5724 24 1 2.4335 3.4491 -0.4514 25 1 6.0206 5.2458 1.4167 26 1 4.1756 -2.0634 -0.0039 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166798448.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:06 Heat of formation + Delta-G solvation = 4.158652 kcal Electronic energy + Delta-G solvation = -13661.621470 eV Core-core repulsion = 11076.081045 eV Total energy + Delta-G solvation = -2585.540425 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 211.082 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -49.45827 -41.50620 -38.02192 -35.08175 -34.09282 -31.56516 -29.46283 -28.19667 -26.26257 -24.04050 -22.89084 -19.66337 -18.67015 -18.11523 -17.94670 -16.84926 -16.46578 -15.60247 -15.49250 -15.06650 -14.60176 -14.40583 -13.69567 -13.61078 -13.33461 -13.20498 -13.04993 -12.68505 -12.46638 -12.21387 -12.05760 -11.45918 -11.27179 -10.54202 -9.72787 -8.95742 -8.40886 -5.91260 0.27063 0.40752 1.41935 1.46153 1.55568 2.11978 2.58493 2.75143 3.21218 3.40154 3.44050 3.85086 4.23395 4.26757 4.64628 4.75510 4.75773 4.88939 4.92048 5.13073 5.23530 5.38642 5.66539 5.91563 6.37917 6.45373 7.07439 7.27336 7.81445 8.58033 Molecular weight = 211.08amu Principal moments of inertia in cm(-1) A = 0.054626 B = 0.008803 C = 0.007713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.451909 B = 3180.122259 C = 3629.440674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.192 3.808 3 N -0.588 5.588 4 C 0.475 3.525 5 N -0.410 5.410 6 C 0.147 3.853 7 C -0.318 4.318 8 H 0.099 0.901 9 C -0.011 4.011 10 N -0.895 5.895 11 Si 1.005 2.995 12 H -0.266 1.266 13 H -0.276 1.276 14 H -0.265 1.265 15 N -0.583 5.583 16 C 0.176 3.824 17 C -0.153 4.153 18 F -0.137 7.137 19 H 0.096 0.904 20 H 0.085 0.915 21 H 0.096 0.904 22 H 0.044 0.956 23 H 0.057 0.943 24 H 0.059 0.941 25 H 0.277 0.723 26 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.959 -5.506 -2.038 7.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.039 3.961 3 N -0.316 5.316 4 C 0.122 3.878 5 N -0.103 5.103 6 C 0.003 3.997 7 C -0.447 4.447 8 H 0.117 0.883 9 C -0.213 4.213 10 N -0.531 5.531 11 Si 0.828 3.172 12 H -0.192 1.192 13 H -0.201 1.201 14 H -0.189 1.189 15 N -0.308 5.308 16 C 0.003 3.997 17 C -0.185 4.185 18 F -0.116 7.116 19 H 0.114 0.886 20 H 0.104 0.896 21 H 0.114 0.886 22 H 0.062 0.938 23 H 0.076 0.924 24 H 0.077 0.923 25 H 0.086 0.914 26 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -4.252 -4.024 -1.940 6.167 hybrid contribution 0.350 -0.693 0.111 0.784 sum -3.902 -4.716 -1.828 6.388 Atomic orbital electron populations 1.20754 0.85266 1.04656 1.04516 1.22013 0.98898 0.86296 0.88922 1.67737 1.07380 1.29950 1.26513 1.19611 0.85296 0.87185 0.95672 1.42564 1.05623 1.01203 1.60942 1.21268 0.93495 0.83885 1.01004 1.20020 0.80023 1.03795 1.40887 0.88326 1.26372 1.05374 0.95258 0.94328 1.70192 1.38707 1.09864 1.34359 0.84736 0.75515 0.78751 0.78225 1.19158 1.20107 1.18930 1.67944 1.40424 0.97665 1.24762 1.23367 0.90777 0.96304 0.89272 1.18519 0.92427 0.82522 1.25059 1.91366 1.81012 1.43445 1.95780 0.88603 0.89594 0.88579 0.93772 0.92431 0.92292 0.91372 0.79130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.53 10.06 71.24 0.72 -1.81 15 2 C 0.19 7.26 6.83 42.64 0.29 7.55 15 3 N -0.59 -26.70 8.99 -185.77 -1.67 -28.37 15 4 C 0.48 24.06 8.13 261.42 2.13 26.19 15 5 N -0.41 -21.94 3.11 -547.64 -1.70 -23.64 15 6 C 0.15 7.19 8.73 127.77 1.11 8.31 15 7 C -0.32 -17.34 9.29 84.03 0.78 -16.56 15 8 H 0.10 5.45 7.32 -2.91 -0.02 5.43 15 9 C -0.01 -0.54 5.13 84.87 0.44 -0.10 15 10 N -0.90 -47.22 10.58 21.65 0.23 -46.99 15 11 Si 1.01 40.64 29.57 68.60 2.03 42.67 15 12 H -0.27 -10.33 7.11 99.48 0.71 -9.62 15 13 H -0.28 -10.81 7.11 99.48 0.71 -10.10 15 14 H -0.27 -10.57 7.11 99.48 0.71 -9.87 15 15 N -0.58 -27.99 9.23 -197.70 -1.82 -29.81 15 16 C 0.18 6.82 11.30 84.79 0.96 7.78 15 17 C -0.15 -5.65 7.32 22.57 0.17 -5.48 15 18 F -0.14 -4.43 16.61 44.97 0.75 -3.68 15 19 H 0.10 2.26 8.14 -2.39 -0.02 2.24 15 20 H 0.09 2.17 8.14 -2.39 -0.02 2.16 15 21 H 0.10 2.16 7.71 -2.39 -0.02 2.14 15 22 H 0.04 2.27 7.44 -2.39 -0.02 2.25 15 23 H 0.06 2.85 7.17 -2.39 -0.02 2.83 15 24 H 0.06 2.64 7.21 -2.39 -0.02 2.63 15 25 H 0.28 13.60 8.31 -92.71 -0.77 12.83 15 26 H 0.19 5.78 8.06 -2.91 -0.02 5.75 15 Total: -1.00 -60.89 235.68 5.59 -55.30 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: 1.20 Total: 8.66 kcal Atomic # 6 Polarization: 19.28 SS G_CDS: 6.59 Total: 25.86 kcal Atomic # 7 Polarization: -123.84 SS G_CDS: -4.97 Total: -128.81 kcal Atomic # 9 Polarization: -4.43 SS G_CDS: 0.75 Total: -3.68 kcal Atomic # 14 Polarization: 40.64 SS G_CDS: 2.03 Total: 42.67 kcal Total: -60.89 5.59 -55.30 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166798448.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.461 kcal (2) G-P(sol) polarization free energy of solvation -60.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.302 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds