Wall clock time and date at job start Sun Mar 29 2020 21:27:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38877 * 120.75393 * 2 1 4 4 C 1.38119 * 119.35759 * 179.97438 * 3 2 1 5 5 N 1.31909 * 120.91508 * 359.72984 * 4 3 2 6 6 C 1.32456 * 121.64808 * 0.55766 * 5 4 3 7 7 N 1.38903 * 119.72751 * 179.71342 * 6 5 4 8 8 C 1.46501 * 120.00116 * 354.01414 * 7 6 5 9 9 C 1.36880 * 119.99764 * 173.74221 * 7 6 5 10 10 H 1.08004 * 120.00447 * 318.32027 * 9 7 6 11 11 C 1.38811 * 120.00270 * 138.32897 * 9 7 6 12 12 N 1.31576 * 119.99642 * 350.90219 * 11 9 7 13 13 Si 1.86792 * 120.00316 * 170.90119 * 11 9 7 14 14 H 1.48503 * 109.47139 * 0.02562 * 13 11 9 15 15 H 1.48493 * 109.47265 * 119.99673 * 13 11 9 16 16 H 1.48498 * 109.47441 * 240.00377 * 13 11 9 17 17 C 1.38486 * 120.75812 * 179.97438 * 2 1 3 18 18 F 1.35105 * 120.47920 * 0.02562 * 17 2 1 19 19 H 1.08996 * 109.47110 * 270.02020 * 1 2 3 20 20 H 1.08997 * 109.47159 * 30.02341 * 1 2 3 21 21 H 1.09006 * 109.46967 * 150.02064 * 1 2 3 22 22 H 1.07995 * 120.31995 * 359.95956 * 3 2 1 23 23 H 1.07996 * 119.53929 * 179.97438 * 4 3 2 24 24 H 1.09001 * 109.46965 * 274.95254 * 8 7 6 25 25 H 1.09004 * 109.46827 * 34.94498 * 8 7 6 26 26 H 1.08994 * 109.47147 * 154.94504 * 8 7 6 27 27 H 0.96999 * 120.00177 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2172 1.1935 0.0000 4 6 3.5980 1.1598 0.0005 5 7 4.2479 0.0120 0.0064 6 6 3.6091 -1.1484 0.0010 7 7 4.3337 -2.3335 0.0014 8 6 5.7929 -2.3000 -0.1244 9 6 3.6847 -3.5323 0.1251 10 1 2.8719 -3.6364 0.8286 11 6 4.0714 -4.6145 -0.6535 12 7 4.9347 -4.4458 -1.6320 13 14 3.3662 -6.3102 -0.3122 14 1 2.4232 -6.2329 0.8324 15 1 2.6446 -6.7975 -1.5151 16 1 4.4694 -7.2480 0.0171 17 6 2.2153 -1.1901 0.0005 18 9 1.5652 -2.3744 0.0005 19 1 -0.3633 0.0004 1.0276 20 1 -0.3633 0.8897 -0.5142 21 1 -0.3633 -0.8902 -0.5135 22 1 1.6948 2.1387 -0.0007 23 1 4.1531 2.0861 0.0001 24 1 6.0657 -2.2565 -1.1789 25 1 6.1816 -1.4199 0.3880 26 1 6.2170 -3.1984 0.3239 27 1 5.2052 -5.2020 -2.1759 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166799517.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:27:54 Heat of formation + Delta-G solvation = -16.455916 kcal Electronic energy + Delta-G solvation = -13912.665350 eV Core-core repulsion = 11391.656921 eV Total energy + Delta-G solvation = -2521.008429 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.086 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -49.34952 -40.66425 -37.80102 -34.54648 -33.56023 -30.57997 -28.99113 -27.88405 -25.79524 -23.55322 -21.98993 -19.71641 -17.94711 -17.84193 -17.49958 -16.55304 -16.30628 -15.36006 -15.17319 -14.98289 -14.39434 -14.19434 -13.76694 -13.56755 -13.45386 -13.14789 -12.94516 -12.76028 -12.56708 -12.21479 -12.06508 -11.10932 -10.54364 -10.15928 -10.00655 -8.59378 -8.18650 -6.02692 0.47995 0.65663 1.37372 1.40383 1.52382 2.21466 2.84774 2.88607 3.19907 3.76102 3.89074 4.02091 4.39765 4.47452 4.67884 4.78831 4.83934 4.90640 5.10372 5.15499 5.19060 5.33978 5.40518 5.51183 5.92614 6.24533 6.62102 7.14340 7.23747 7.80825 8.68046 Molecular weight = 210.09amu Principal moments of inertia in cm(-1) A = 0.038987 B = 0.012216 C = 0.009688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.007210 B = 2291.474823 C = 2889.519475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.040 4.040 3 C -0.253 4.253 4 C 0.140 3.860 5 N -0.576 5.576 6 C 0.334 3.666 7 N -0.450 5.450 8 C 0.142 3.858 9 C -0.331 4.331 10 H 0.088 0.912 11 C -0.006 4.006 12 N -0.903 5.903 13 Si 0.991 3.009 14 H -0.263 1.263 15 H -0.277 1.277 16 H -0.268 1.268 17 C -0.078 4.078 18 F -0.146 7.146 19 H 0.087 0.913 20 H 0.101 0.899 21 H 0.055 0.945 22 H 0.168 0.832 23 H 0.187 0.813 24 H 0.028 0.972 25 H 0.057 0.943 26 H 0.046 0.954 27 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.568 7.512 2.874 9.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.048 4.048 3 C -0.278 4.278 4 C -0.020 4.020 5 N -0.298 5.298 6 C 0.095 3.905 7 N -0.144 5.144 8 C -0.001 4.001 9 C -0.460 4.460 10 H 0.106 0.894 11 C -0.208 4.208 12 N -0.539 5.539 13 Si 0.814 3.186 14 H -0.186 1.186 15 H -0.203 1.203 16 H -0.193 1.193 17 C -0.106 4.106 18 F -0.125 7.125 19 H 0.106 0.894 20 H 0.120 0.880 21 H 0.074 0.926 22 H 0.185 0.815 23 H 0.204 0.796 24 H 0.047 0.953 25 H 0.076 0.924 26 H 0.065 0.935 27 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.408 7.035 2.730 8.740 hybrid contribution -0.867 -1.292 -0.172 1.565 sum -5.274 5.743 2.559 8.207 Atomic orbital electron populations 1.20737 0.88017 1.03771 1.03603 1.20512 0.98302 0.90927 0.95100 1.21662 0.94653 0.97838 1.13626 1.22976 0.92746 0.94894 0.91400 1.67283 1.40550 0.97320 1.24603 1.19261 0.87987 0.88065 0.95213 1.42454 1.05051 1.01601 1.65253 1.21081 0.80364 0.99276 0.99388 1.19869 1.18504 0.86570 1.21025 0.89432 1.26448 0.96838 1.04082 0.93480 1.70123 1.32892 1.32874 1.18021 0.84904 0.78411 0.76812 0.78500 1.18644 1.20262 1.19344 1.18057 0.89683 0.82327 1.20489 1.91350 1.80913 1.45074 1.95168 0.89450 0.88050 0.92554 0.81492 0.79635 0.95335 0.92408 0.93524 0.91947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.87 9.90 71.24 0.70 -2.17 15 2 C -0.04 -1.48 5.92 -19.65 -0.12 -1.60 15 3 C -0.25 -7.87 9.81 22.39 0.22 -7.65 15 4 C 0.14 4.79 11.17 84.65 0.95 5.74 15 5 N -0.58 -25.93 9.16 -193.02 -1.77 -27.70 15 6 C 0.33 17.13 7.34 133.16 0.98 18.11 15 7 N -0.45 -24.96 3.01 -541.03 -1.63 -26.59 15 8 C 0.14 7.29 8.87 127.77 1.13 8.42 15 9 C -0.33 -18.83 7.52 84.04 0.63 -18.20 15 10 H 0.09 5.04 6.32 -2.91 -0.02 5.02 15 11 C -0.01 -0.34 5.16 84.87 0.44 0.10 15 12 N -0.90 -51.63 11.87 21.65 0.26 -51.37 15 13 Si 0.99 43.34 29.56 68.60 2.03 45.37 15 14 H -0.26 -11.18 7.11 99.48 0.71 -10.47 15 15 H -0.28 -11.91 7.11 99.48 0.71 -11.20 15 16 H -0.27 -11.14 7.11 99.48 0.71 -10.44 15 17 C -0.08 -3.71 7.13 22.62 0.16 -3.55 15 18 F -0.15 -7.46 13.08 44.97 0.59 -6.87 15 19 H 0.09 2.11 8.14 -2.39 -0.02 2.09 15 20 H 0.10 2.07 8.10 -2.39 -0.02 2.05 15 21 H 0.06 1.68 7.72 -2.38 -0.02 1.66 15 22 H 0.17 3.59 8.06 -2.91 -0.02 3.57 15 23 H 0.19 4.59 8.06 -2.91 -0.02 4.56 15 24 H 0.03 1.53 7.72 -2.39 -0.02 1.52 15 25 H 0.06 2.69 7.45 -2.38 -0.02 2.67 15 26 H 0.05 2.38 7.80 -2.39 -0.02 2.36 15 27 H 0.27 14.49 8.31 -92.71 -0.77 13.72 15 Total: -1.00 -66.59 238.51 5.75 -60.85 By element: Atomic # 1 Polarization: 5.93 SS G_CDS: 1.17 Total: 7.10 kcal Atomic # 6 Polarization: -5.88 SS G_CDS: 5.10 Total: -0.79 kcal Atomic # 7 Polarization: -102.53 SS G_CDS: -3.14 Total: -105.67 kcal Atomic # 9 Polarization: -7.46 SS G_CDS: 0.59 Total: -6.87 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Total: -66.59 5.75 -60.85 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166799517.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.392 kcal (2) G-P(sol) polarization free energy of solvation -66.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds