Wall clock time and date at job start Sun Mar 29 2020 21:27:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38149 * 120.31873 * 2 1 4 4 N 1.31888 * 120.91199 * 179.97438 * 3 2 1 5 5 C 1.32477 * 121.64388 * 0.02757 * 4 3 2 6 6 N 1.38909 * 119.72501 * 179.97438 * 5 4 3 7 7 C 1.46506 * 119.99988 * 6.13504 * 6 5 4 8 8 C 1.36889 * 120.00263 * 186.13633 * 6 5 4 9 9 H 1.08001 * 119.99566 * 41.33126 * 8 6 5 10 10 C 1.38801 * 120.00196 * 221.32935 * 8 6 5 11 11 N 1.31580 * 119.99876 * 7.80731 * 10 8 6 12 12 Si 1.86802 * 120.00100 * 187.80584 * 10 8 6 13 13 H 1.48500 * 109.47109 * 60.00219 * 12 10 8 14 14 H 1.48496 * 109.47186 * 180.02562 * 12 10 8 15 15 H 1.48495 * 109.47085 * 299.99996 * 12 10 8 16 16 C 1.39403 * 120.55261 * 0.02562 * 5 4 3 17 17 F 1.35101 * 120.48195 * 180.02562 * 16 5 4 18 18 C 1.38533 * 119.04741 * 359.68512 * 16 5 4 19 19 H 1.09001 * 109.47132 * 90.00296 * 1 2 3 20 20 H 1.09005 * 109.47488 * 209.99625 * 1 2 3 21 21 H 1.08994 * 109.47536 * 330.00308 * 1 2 3 22 22 H 1.07995 * 119.54667 * 359.97438 * 3 2 1 23 23 H 1.09001 * 109.46650 * 84.77107 * 7 6 5 24 24 H 1.08992 * 109.46915 * 204.77013 * 7 6 5 25 25 H 1.08995 * 109.46802 * 324.77572 * 7 6 5 26 26 H 0.97000 * 119.99552 * 179.97438 * 11 10 8 27 27 H 1.07994 * 120.76218 * 180.28652 * 18 16 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2044 1.1925 0.0000 4 7 3.5232 1.2062 0.0005 5 6 4.2299 0.0856 0.0005 6 7 5.6176 0.1465 0.0005 7 6 6.2941 1.4389 0.1361 8 6 6.3531 -1.0010 -0.1262 9 1 6.0480 -1.7632 -0.8280 10 6 7.4910 -1.1850 0.6470 11 7 7.7786 -0.3329 1.6075 12 14 8.6141 -2.6424 0.3242 13 1 9.1326 -2.5695 -1.0654 14 1 9.7507 -2.6126 1.2794 15 1 7.8514 -3.9040 0.5024 16 6 3.5924 -1.1541 -0.0006 17 9 4.3145 -2.2960 -0.0001 18 6 2.2078 -1.1985 0.0050 19 1 -0.3633 -0.0001 -1.0277 20 1 -0.3634 -0.8900 0.5138 21 1 -0.3634 0.8899 0.5137 22 1 1.6622 2.1265 -0.0004 23 1 6.3836 1.6931 1.1923 24 1 7.2875 1.3774 -0.3082 25 1 5.7145 2.2077 -0.3747 26 1 8.5736 -0.4617 2.1481 27 1 1.6855 -2.1438 0.0089 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166800776.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:27:51 Heat of formation + Delta-G solvation = 0.542273 kcal Electronic energy + Delta-G solvation = -13785.831771 eV Core-core repulsion = 11265.560439 eV Total energy + Delta-G solvation = -2520.271332 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.086 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -47.54675 -39.02336 -36.03965 -32.69641 -31.35167 -29.99850 -26.68277 -26.23701 -23.44412 -22.04603 -20.65444 -17.88570 -16.47200 -15.72560 -15.68626 -14.85370 -14.50244 -13.60416 -13.33165 -13.15582 -12.96747 -12.66868 -12.23703 -12.02303 -11.66893 -11.37887 -11.32035 -11.05972 -10.78688 -10.39550 -10.34966 -9.18285 -8.79438 -8.50294 -8.42798 -6.66730 -6.28622 -4.00483 2.14407 2.26418 3.16558 3.18853 3.21762 4.01452 4.62671 4.65728 5.03904 5.34854 5.51152 5.54469 5.77084 5.92655 6.04684 6.15178 6.39773 6.63369 6.71948 6.81651 6.90505 7.07756 7.18601 7.39502 7.61169 8.09994 8.48086 8.90406 9.13423 9.65605 10.60212 Molecular weight = 210.09amu Principal moments of inertia in cm(-1) A = 0.049847 B = 0.010445 C = 0.008958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.579049 B = 2679.949035 C = 3124.987790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.253 4.253 3 C 0.149 3.851 4 N -0.553 5.553 5 C 0.349 3.651 6 N -0.412 5.412 7 C 0.123 3.877 8 C -0.318 4.318 9 H 0.101 0.899 10 C 0.041 3.959 11 N -0.866 5.866 12 Si 0.928 3.072 13 H -0.271 1.271 14 H -0.282 1.282 15 H -0.269 1.269 16 C -0.028 4.028 17 F -0.131 7.131 18 C -0.071 4.071 19 H 0.051 0.949 20 H 0.051 0.949 21 H 0.055 0.945 22 H 0.140 0.860 23 H 0.052 0.948 24 H 0.057 0.943 25 H 0.044 0.956 26 H 0.271 0.729 27 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.039 0.186 -2.336 7.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.261 4.261 3 C -0.012 4.012 4 N -0.273 5.273 5 C 0.107 3.893 6 N -0.101 5.101 7 C -0.020 4.020 8 C -0.447 4.447 9 H 0.118 0.882 10 C -0.166 4.166 11 N -0.500 5.500 12 Si 0.754 3.246 13 H -0.196 1.196 14 H -0.208 1.208 15 H -0.194 1.194 16 C -0.057 4.057 17 F -0.110 7.110 18 C -0.097 4.097 19 H 0.070 0.930 20 H 0.070 0.930 21 H 0.074 0.926 22 H 0.157 0.843 23 H 0.070 0.930 24 H 0.075 0.925 25 H 0.063 0.937 26 H 0.081 0.919 27 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -5.976 0.976 -2.167 6.431 hybrid contribution 0.301 -1.683 0.052 1.711 sum -5.675 -0.707 -2.115 6.097 Atomic orbital electron populations 1.20327 0.91620 1.01273 1.00628 1.19895 0.96076 0.93113 1.17001 1.22007 0.88961 0.96513 0.93744 1.67242 1.07947 1.28181 1.23966 1.18880 0.86989 0.87764 0.95642 1.42404 0.98880 1.07168 1.61673 1.21360 0.95662 0.84041 1.00963 1.19796 1.06370 0.97308 1.21191 0.88167 1.25624 0.98844 0.98272 0.93885 1.70004 1.26164 1.36217 1.17653 0.85967 0.79047 0.81254 0.78344 1.19617 1.20753 1.19365 1.17741 0.89139 0.82242 1.16541 1.91430 1.77367 1.47517 1.94717 1.20956 0.91511 0.98473 0.98736 0.92990 0.92958 0.92642 0.84271 0.92989 0.92453 0.93726 0.91872 0.85970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.07 10.03 36.01 0.36 -0.71 15 2 C -0.25 -4.52 5.90 -104.43 -0.62 -5.13 15 3 C 0.15 2.85 10.85 -17.56 -0.19 2.66 15 4 N -0.55 -12.69 9.16 -12.36 -0.11 -12.80 15 5 C 0.35 8.80 7.34 -154.95 -1.14 7.67 15 6 N -0.41 -10.98 3.02 -122.37 -0.37 -11.35 15 7 C 0.12 3.01 8.84 59.85 0.53 3.54 15 8 C -0.32 -8.66 7.55 -15.09 -0.11 -8.77 15 9 H 0.10 2.73 6.30 -52.49 -0.33 2.40 15 10 C 0.04 1.07 5.17 -17.45 -0.09 0.98 15 11 N -0.87 -23.71 11.76 55.49 0.65 -23.06 15 12 Si 0.93 20.50 29.56 -169.99 -5.02 15.48 15 13 H -0.27 -5.83 7.11 56.52 0.40 -5.43 15 14 H -0.28 -6.12 7.11 56.52 0.40 -5.72 15 15 H -0.27 -5.94 7.11 56.52 0.40 -5.54 15 16 C -0.03 -0.67 7.19 -39.04 -0.28 -0.96 15 17 F -0.13 -3.28 13.75 2.25 0.03 -3.25 15 18 C -0.07 -1.40 9.83 -39.25 -0.39 -1.79 15 19 H 0.05 0.63 8.14 -51.93 -0.42 0.21 15 20 H 0.05 0.64 8.09 -51.93 -0.42 0.22 15 21 H 0.05 0.65 8.09 -51.93 -0.42 0.23 15 22 H 0.14 2.14 8.06 -52.49 -0.42 1.72 15 23 H 0.05 1.33 7.71 -51.93 -0.40 0.93 15 24 H 0.06 1.39 7.74 -51.93 -0.40 0.99 15 25 H 0.04 1.00 7.45 -51.93 -0.39 0.62 15 26 H 0.27 7.00 8.31 -40.82 -0.34 6.66 15 27 H 0.12 2.08 8.06 -52.49 -0.42 1.65 15 LS Contribution 239.23 15.07 3.61 3.61 Total: -1.00 -29.06 239.23 -5.91 -34.97 By element: Atomic # 1 Polarization: 1.69 SS G_CDS: -2.76 Total: -1.07 kcal Atomic # 6 Polarization: -0.59 SS G_CDS: -1.92 Total: -2.52 kcal Atomic # 7 Polarization: -47.38 SS G_CDS: 0.17 Total: -47.21 kcal Atomic # 9 Polarization: -3.28 SS G_CDS: 0.03 Total: -3.25 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -29.06 -5.91 -34.97 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166800776.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.509 kcal (2) G-P(sol) polarization free energy of solvation -29.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.967 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds