Wall clock time and date at job start Sun Mar 29 2020 21:27:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38149 * 120.31873 * 2 1 4 4 N 1.31888 * 120.91199 * 179.97438 * 3 2 1 5 5 C 1.32477 * 121.64388 * 0.02757 * 4 3 2 6 6 N 1.38909 * 119.72501 * 179.97438 * 5 4 3 7 7 C 1.46506 * 119.99988 * 6.13504 * 6 5 4 8 8 C 1.36889 * 120.00263 * 186.13633 * 6 5 4 9 9 H 1.08001 * 119.99566 * 41.33126 * 8 6 5 10 10 C 1.38801 * 120.00196 * 221.32935 * 8 6 5 11 11 N 1.31580 * 119.99876 * 7.80731 * 10 8 6 12 12 Si 1.86802 * 120.00100 * 187.80584 * 10 8 6 13 13 H 1.48500 * 109.47109 * 60.00219 * 12 10 8 14 14 H 1.48496 * 109.47186 * 180.02562 * 12 10 8 15 15 H 1.48495 * 109.47085 * 299.99996 * 12 10 8 16 16 C 1.39403 * 120.55261 * 0.02562 * 5 4 3 17 17 F 1.35101 * 120.48195 * 180.02562 * 16 5 4 18 18 C 1.38533 * 119.04741 * 359.68512 * 16 5 4 19 19 H 1.09001 * 109.47132 * 90.00296 * 1 2 3 20 20 H 1.09005 * 109.47488 * 209.99625 * 1 2 3 21 21 H 1.08994 * 109.47536 * 330.00308 * 1 2 3 22 22 H 1.07995 * 119.54667 * 359.97438 * 3 2 1 23 23 H 1.09001 * 109.46650 * 84.77107 * 7 6 5 24 24 H 1.08992 * 109.46915 * 204.77013 * 7 6 5 25 25 H 1.08995 * 109.46802 * 324.77572 * 7 6 5 26 26 H 0.97000 * 119.99552 * 179.97438 * 11 10 8 27 27 H 1.07994 * 120.76218 * 180.28652 * 18 16 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2044 1.1925 0.0000 4 7 3.5232 1.2062 0.0005 5 6 4.2299 0.0856 0.0005 6 7 5.6176 0.1465 0.0005 7 6 6.2941 1.4389 0.1361 8 6 6.3531 -1.0010 -0.1262 9 1 6.0480 -1.7632 -0.8280 10 6 7.4910 -1.1850 0.6470 11 7 7.7786 -0.3329 1.6075 12 14 8.6141 -2.6424 0.3242 13 1 9.1326 -2.5695 -1.0654 14 1 9.7507 -2.6126 1.2794 15 1 7.8514 -3.9040 0.5024 16 6 3.5924 -1.1541 -0.0006 17 9 4.3145 -2.2960 -0.0001 18 6 2.2078 -1.1985 0.0050 19 1 -0.3633 -0.0001 -1.0277 20 1 -0.3634 -0.8900 0.5138 21 1 -0.3634 0.8899 0.5137 22 1 1.6622 2.1265 -0.0004 23 1 6.3836 1.6931 1.1923 24 1 7.2875 1.3774 -0.3082 25 1 5.7145 2.2077 -0.3747 26 1 8.5736 -0.4617 2.1481 27 1 1.6855 -2.1438 0.0089 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166800776.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:27:51 Heat of formation + Delta-G solvation = -16.474575 kcal Electronic energy + Delta-G solvation = -13786.569677 eV Core-core repulsion = 11265.560439 eV Total energy + Delta-G solvation = -2521.009238 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.086 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -49.38192 -40.73732 -37.84332 -34.41594 -33.13229 -31.62931 -28.51939 -27.86356 -25.17624 -23.75381 -22.34889 -19.76315 -18.26576 -17.50124 -17.43747 -16.62619 -16.32639 -15.34531 -15.13669 -14.99875 -14.34531 -14.24053 -13.89394 -13.46517 -13.20735 -13.07223 -12.93354 -12.77457 -12.59384 -12.18504 -12.12431 -11.05451 -10.47380 -10.25753 -10.17899 -8.55476 -8.15764 -6.01366 0.45790 0.61936 1.37900 1.44123 1.49473 2.21888 2.83771 2.88077 3.17661 3.69996 3.92700 4.05719 4.35372 4.48502 4.69876 4.85461 4.88918 5.04953 5.09485 5.18139 5.22030 5.34939 5.41290 5.59014 5.91534 6.22384 6.60995 7.11124 7.23204 7.78984 8.67727 Molecular weight = 210.09amu Principal moments of inertia in cm(-1) A = 0.049847 B = 0.010445 C = 0.008958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.579049 B = 2679.949035 C = 3124.987790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.223 4.223 3 C 0.140 3.860 4 N -0.567 5.567 5 C 0.328 3.672 6 N -0.449 5.449 7 C 0.143 3.857 8 C -0.333 4.333 9 H 0.089 0.911 10 C -0.005 4.005 11 N -0.902 5.902 12 Si 0.991 3.009 13 H -0.262 1.262 14 H -0.275 1.275 15 H -0.270 1.270 16 C -0.070 4.070 17 F -0.147 7.147 18 C -0.065 4.065 19 H 0.073 0.927 20 H 0.067 0.933 21 H 0.079 0.921 22 H 0.184 0.816 23 H 0.028 0.972 24 H 0.046 0.954 25 H 0.056 0.944 26 H 0.272 0.728 27 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.732 0.071 -2.741 10.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.230 4.230 3 C -0.021 4.021 4 N -0.287 5.287 5 C 0.088 3.912 6 N -0.143 5.143 7 C 0.000 4.000 8 C -0.462 4.462 9 H 0.107 0.893 10 C -0.208 4.208 11 N -0.539 5.539 12 Si 0.814 3.186 13 H -0.186 1.186 14 H -0.200 1.200 15 H -0.195 1.195 16 C -0.098 4.098 17 F -0.126 7.126 18 C -0.091 4.091 19 H 0.092 0.908 20 H 0.086 0.914 21 H 0.098 0.902 22 H 0.200 0.800 23 H 0.047 0.953 24 H 0.065 0.935 25 H 0.075 0.925 26 H 0.081 0.919 27 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -8.737 0.872 -2.587 9.153 hybrid contribution 0.714 -1.551 0.148 1.714 sum -8.022 -0.680 -2.439 8.413 Atomic orbital electron populations 1.20470 0.87342 1.03374 1.02626 1.20576 0.98935 0.91756 1.11769 1.22870 0.87851 0.99055 0.92312 1.67279 1.09929 1.27730 1.23789 1.19216 0.86961 0.89053 0.95925 1.42450 0.99610 1.07089 1.65133 1.21077 0.95324 0.84232 0.99373 1.19824 1.07326 0.97650 1.21413 0.89345 1.26442 1.00079 1.00751 0.93503 1.70111 1.26882 1.37983 1.18881 0.85023 0.77172 0.77764 0.78653 1.18614 1.20010 1.19506 1.18198 0.90795 0.81599 1.19179 1.91374 1.78085 1.48038 1.95136 1.21429 0.89937 1.00846 0.96877 0.90843 0.91378 0.90211 0.79953 0.95302 0.93486 0.92502 0.91915 0.82876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.64 10.03 71.24 0.71 -0.93 15 2 C -0.22 -7.01 5.90 -19.74 -0.12 -7.13 15 3 C 0.14 4.83 10.85 84.66 0.92 5.75 15 4 N -0.57 -25.46 9.16 -193.03 -1.77 -27.22 15 5 C 0.33 16.71 7.34 133.14 0.98 17.69 15 6 N -0.45 -24.81 3.02 -541.06 -1.63 -26.45 15 7 C 0.14 7.32 8.84 127.77 1.13 8.45 15 8 C -0.33 -18.91 7.55 84.04 0.63 -18.27 15 9 H 0.09 5.04 6.30 -2.91 -0.02 5.02 15 10 C -0.01 -0.29 5.17 84.87 0.44 0.15 15 11 N -0.90 -51.36 11.76 21.65 0.25 -51.10 15 12 Si 0.99 43.16 29.56 68.60 2.03 45.19 15 13 H -0.26 -10.84 7.11 99.48 0.71 -10.14 15 14 H -0.28 -11.51 7.11 99.48 0.71 -10.81 15 15 H -0.27 -11.66 7.11 99.48 0.71 -10.96 15 16 C -0.07 -3.32 7.19 22.62 0.16 -3.15 15 17 F -0.15 -7.53 13.75 44.97 0.62 -6.91 15 18 C -0.07 -2.40 9.83 22.48 0.22 -2.18 15 19 H 0.07 1.30 8.14 -2.39 -0.02 1.28 15 20 H 0.07 1.25 8.09 -2.38 -0.02 1.23 15 21 H 0.08 1.32 8.09 -2.39 -0.02 1.30 15 22 H 0.18 4.66 8.06 -2.91 -0.02 4.64 15 23 H 0.03 1.55 7.71 -2.39 -0.02 1.53 15 24 H 0.05 2.40 7.74 -2.39 -0.02 2.38 15 25 H 0.06 2.64 7.45 -2.39 -0.02 2.62 15 26 H 0.27 14.52 8.31 -92.71 -0.77 13.75 15 27 H 0.15 4.62 8.06 -2.91 -0.02 4.60 15 Total: -1.00 -65.41 239.23 5.75 -59.66 By element: Atomic # 1 Polarization: 5.27 SS G_CDS: 1.17 Total: 6.45 kcal Atomic # 6 Polarization: -4.70 SS G_CDS: 5.08 Total: 0.38 kcal Atomic # 7 Polarization: -101.63 SS G_CDS: -3.15 Total: -104.77 kcal Atomic # 9 Polarization: -7.53 SS G_CDS: 0.62 Total: -6.91 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Total: -65.41 5.75 -59.66 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166800776.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.190 kcal (2) G-P(sol) polarization free energy of solvation -65.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds