Wall clock time and date at job start Sun Mar 29 2020 21:55:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.48723 * 111.00161 * 2 1 4 4 H 1.08998 * 112.74024 * 44.44474 * 3 2 1 5 5 C 1.54604 * 104.22212 * 282.48913 * 3 2 1 6 6 C 1.54289 * 104.84480 * 334.82227 * 5 3 2 7 7 C 1.48718 * 110.99897 * 245.53487 * 2 1 3 8 8 H 1.08998 * 112.23625 * 315.83555 * 7 2 1 9 9 C 1.53716 * 107.23596 * 191.65214 * 7 2 1 10 10 C 1.53128 * 108.89126 * 295.91203 * 9 7 2 11 11 H 1.09005 * 109.38950 * 293.96451 * 10 9 7 12 12 N 1.46504 * 109.42991 * 174.09359 * 10 9 7 13 13 C 1.36943 * 119.99781 * 84.73850 * 12 10 9 14 14 H 1.08002 * 119.99788 * 359.97438 * 13 12 10 15 15 C 1.38811 * 119.99622 * 180.27904 * 13 12 10 16 16 N 1.31614 * 120.00467 * 359.72375 * 15 13 12 17 17 Si 1.86801 * 119.99700 * 179.72266 * 15 13 12 18 18 H 1.48501 * 109.46896 * 89.99850 * 17 15 13 19 19 H 1.48499 * 109.47039 * 210.00011 * 17 15 13 20 20 H 1.48501 * 109.47275 * 329.99811 * 17 15 13 21 21 C 1.53140 * 109.73058 * 54.01730 * 10 9 7 22 22 H 1.08999 * 109.47195 * 60.00122 * 1 2 3 23 23 H 1.09002 * 109.47045 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47068 * 299.99961 * 1 2 3 25 25 H 1.09004 * 110.36221 * 93.66215 * 5 3 2 26 26 H 1.09000 * 110.36613 * 215.86416 * 5 3 2 27 27 H 1.08992 * 110.36522 * 118.83953 * 6 5 3 28 28 H 1.09004 * 110.36040 * 241.15959 * 6 5 3 29 29 H 1.09005 * 109.56452 * 176.08868 * 9 7 2 30 30 H 1.09005 * 109.56954 * 55.73964 * 9 7 2 31 31 H 0.97000 * 120.00410 * 264.74175 * 12 10 9 32 32 H 0.96995 * 120.00147 * 180.02562 * 16 15 13 33 33 H 1.08994 * 109.56812 * 65.80366 * 21 10 9 34 34 H 1.08996 * 109.56706 * 186.04340 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0020 1.3884 0.0000 4 1 1.4830 2.0390 0.7039 5 6 1.8355 1.8592 -1.4632 6 6 1.8355 0.5618 -2.2983 7 6 2.0019 -0.5750 -1.2638 8 1 1.4740 -1.4817 -1.5592 9 6 3.5075 -0.8076 -1.0590 10 6 4.1937 0.5447 -0.8462 11 1 4.1252 1.1332 -1.7612 12 7 5.6032 0.3285 -0.5102 13 6 6.5264 0.1587 -1.5072 14 1 6.2154 0.1837 -2.5412 15 6 7.8610 -0.0520 -1.1887 16 7 8.2399 -0.0830 0.0714 17 14 9.1192 -0.2914 -2.5485 18 1 9.6786 1.0265 -2.9428 19 1 10.2141 -1.1682 -2.0610 20 1 8.4650 -0.9228 -3.7227 21 6 3.5075 1.2985 0.2967 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 0.8911 2.3894 -1.5859 26 1 2.6692 2.4989 -1.7530 27 1 0.8911 0.4541 -2.8316 28 1 2.6702 0.5620 -2.9993 29 1 3.9249 -1.2941 -1.9406 30 1 3.6638 -1.4381 -0.1836 31 1 5.8824 0.3056 0.4184 32 1 9.1725 -0.2299 0.2939 33 1 3.6637 0.7628 1.2329 34 1 3.9264 2.3016 0.3757 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169096206.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:10 Heat of formation + Delta-G solvation = 17.134491 kcal Electronic energy + Delta-G solvation = -14659.230843 eV Core-core repulsion = 12398.972403 eV Total energy + Delta-G solvation = -2260.258440 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.39627 -34.94062 -32.23608 -30.86947 -30.79084 -28.78347 -25.58275 -23.78488 -23.37404 -21.07012 -20.12488 -18.26680 -17.01715 -16.11451 -15.46104 -14.32738 -14.02732 -13.86548 -13.22840 -12.85603 -12.70798 -12.50894 -12.25761 -12.01912 -11.64242 -11.26767 -11.07621 -10.84751 -10.60532 -10.48812 -10.18333 -10.10287 -9.94421 -9.61190 -9.48694 -8.80553 -8.26575 -6.87412 -5.70668 -2.98552 3.46276 3.51251 3.53055 4.18621 4.63640 4.92520 5.00127 5.12144 5.40951 5.51584 5.56066 5.56967 5.58883 5.67141 5.74605 5.85653 5.92585 6.00499 6.09377 6.17837 6.20591 6.42567 6.51465 6.58792 6.61933 6.76163 6.97239 7.18792 7.23214 7.41012 7.74709 8.48518 9.59139 10.19612 10.54227 11.52265 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.058168 B = 0.008012 C = 0.007755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 481.245392 B = 3494.017212 C = 3609.802609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.506 5.506 3 C 0.066 3.934 4 H 0.086 0.914 5 C -0.149 4.149 6 C -0.148 4.148 7 C 0.063 3.937 8 H 0.082 0.918 9 C -0.122 4.122 10 C 0.178 3.822 11 H 0.047 0.953 12 N -0.726 5.726 13 C -0.235 4.235 14 H 0.068 0.932 15 C -0.015 4.015 16 N -0.933 5.933 17 Si 0.904 3.096 18 H -0.291 1.291 19 H -0.292 1.292 20 H -0.283 1.283 21 C -0.113 4.113 22 H 0.025 0.975 23 H 0.063 0.937 24 H 0.062 0.938 25 H 0.055 0.945 26 H 0.076 0.924 27 H 0.054 0.946 28 H 0.076 0.924 29 H 0.060 0.940 30 H 0.065 0.935 31 H 0.383 0.617 32 H 0.254 0.746 33 H 0.068 0.932 34 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.795 2.024 -1.857 15.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 N -0.228 5.228 3 C -0.043 4.043 4 H 0.104 0.896 5 C -0.188 4.188 6 C -0.187 4.187 7 C -0.046 4.046 8 H 0.100 0.900 9 C -0.162 4.162 10 C 0.069 3.931 11 H 0.065 0.935 12 N -0.366 5.366 13 C -0.366 4.366 14 H 0.086 0.914 15 C -0.211 4.211 16 N -0.582 5.582 17 Si 0.736 3.264 18 H -0.218 1.218 19 H -0.218 1.218 20 H -0.209 1.209 21 C -0.151 4.151 22 H 0.044 0.956 23 H 0.081 0.919 24 H 0.081 0.919 25 H 0.074 0.926 26 H 0.095 0.905 27 H 0.073 0.927 28 H 0.095 0.905 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.217 0.783 32 H 0.064 0.936 33 H 0.087 0.913 34 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -14.514 1.688 -1.516 14.690 hybrid contribution 0.477 0.260 -1.198 1.316 sum -14.037 1.948 -2.715 14.429 Atomic orbital electron populations 1.22441 0.89413 1.01469 1.00229 1.65466 1.06849 1.15650 1.34879 1.23030 0.96769 0.89222 0.95286 0.89623 1.22925 1.01472 0.97933 0.96446 1.22909 1.01403 0.95353 0.99080 1.23128 0.97637 0.96353 0.87453 0.89984 1.22418 0.90950 1.01073 1.01794 1.20337 0.84917 0.92604 0.95290 0.93479 1.42468 1.01110 1.86390 1.06627 1.19241 0.88194 1.40797 0.88394 0.91357 1.24725 0.97172 1.03150 0.96066 1.69660 1.16063 1.57012 1.15491 0.86227 0.81575 0.77502 0.81133 1.21822 1.21821 1.20852 1.21973 0.92148 1.00650 1.00357 0.95618 0.91854 0.91921 0.92631 0.90529 0.92718 0.90518 0.92156 0.91671 0.78332 0.93595 0.91334 0.91875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.16 9.45 60.06 0.57 0.73 16 2 N -0.51 -7.49 5.29 -221.10 -1.17 -8.66 16 3 C 0.07 0.96 3.67 -65.49 -0.24 0.72 16 4 H 0.09 1.12 8.11 -51.93 -0.42 0.70 16 5 C -0.15 -2.03 5.32 -25.21 -0.13 -2.16 16 6 C -0.15 -2.07 5.29 -25.21 -0.13 -2.21 16 7 C 0.06 0.97 3.68 -65.49 -0.24 0.73 16 8 H 0.08 1.15 8.10 -51.93 -0.42 0.73 16 9 C -0.12 -2.29 5.20 -26.29 -0.14 -2.43 16 10 C 0.18 3.63 2.41 -67.79 -0.16 3.47 16 11 H 0.05 0.98 5.45 -51.93 -0.28 0.70 16 12 N -0.73 -18.63 5.12 -53.29 -0.27 -18.90 16 13 C -0.23 -6.61 9.92 -15.06 -0.15 -6.76 16 14 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 15 C -0.02 -0.45 5.50 -17.43 -0.10 -0.54 16 16 N -0.93 -28.67 13.06 55.49 0.72 -27.95 16 17 Si 0.90 22.67 29.55 -169.99 -5.02 17.65 16 18 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 19 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 20 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 21 C -0.11 -1.99 5.09 -26.29 -0.13 -2.12 16 22 H 0.03 0.29 6.88 -51.93 -0.36 -0.07 16 23 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 24 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.05 0.66 8.10 -51.93 -0.42 0.24 16 26 H 0.08 1.10 7.04 -51.93 -0.37 0.74 16 27 H 0.05 0.67 8.01 -51.93 -0.42 0.26 16 28 H 0.08 1.15 7.03 -51.93 -0.37 0.79 16 29 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 31 H 0.38 10.52 7.80 -40.82 -0.32 10.20 16 32 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 33 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 34 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 261.40 15.07 3.94 3.94 Total: -1.00 -30.01 261.40 -8.11 -38.12 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: -5.45 Total: 6.38 kcal Atomic # 6 Polarization: -9.72 SS G_CDS: -0.86 Total: -10.58 kcal Atomic # 7 Polarization: -54.79 SS G_CDS: -0.72 Total: -55.51 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -5.02 Total: 17.65 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -30.01 -8.11 -38.12 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169096206.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.256 kcal (2) G-P(sol) polarization free energy of solvation -30.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.122 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds