Wall clock time and date at job start Sun Mar 29 2020 21:55:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.48723 * 111.00161 * 2 1 4 4 H 1.08998 * 112.74024 * 44.44474 * 3 2 1 5 5 C 1.54604 * 104.22212 * 282.48913 * 3 2 1 6 6 C 1.54289 * 104.84480 * 334.82227 * 5 3 2 7 7 C 1.48718 * 110.99897 * 245.53487 * 2 1 3 8 8 H 1.08998 * 112.23625 * 315.83555 * 7 2 1 9 9 C 1.53716 * 107.23596 * 191.65214 * 7 2 1 10 10 C 1.53128 * 108.89126 * 295.91203 * 9 7 2 11 11 H 1.09005 * 109.38950 * 293.96451 * 10 9 7 12 12 N 1.46504 * 109.42991 * 174.09359 * 10 9 7 13 13 C 1.36943 * 119.99781 * 84.73850 * 12 10 9 14 14 H 1.08002 * 119.99788 * 359.97438 * 13 12 10 15 15 C 1.38811 * 119.99622 * 180.27904 * 13 12 10 16 16 N 1.31614 * 120.00467 * 359.72375 * 15 13 12 17 17 Si 1.86801 * 119.99700 * 179.72266 * 15 13 12 18 18 H 1.48501 * 109.46896 * 89.99850 * 17 15 13 19 19 H 1.48499 * 109.47039 * 210.00011 * 17 15 13 20 20 H 1.48501 * 109.47275 * 329.99811 * 17 15 13 21 21 C 1.53140 * 109.73058 * 54.01730 * 10 9 7 22 22 H 1.08999 * 109.47195 * 60.00122 * 1 2 3 23 23 H 1.09002 * 109.47045 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47068 * 299.99961 * 1 2 3 25 25 H 1.09004 * 110.36221 * 93.66215 * 5 3 2 26 26 H 1.09000 * 110.36613 * 215.86416 * 5 3 2 27 27 H 1.08992 * 110.36522 * 118.83953 * 6 5 3 28 28 H 1.09004 * 110.36040 * 241.15959 * 6 5 3 29 29 H 1.09005 * 109.56452 * 176.08868 * 9 7 2 30 30 H 1.09005 * 109.56954 * 55.73964 * 9 7 2 31 31 H 0.97000 * 120.00410 * 264.74175 * 12 10 9 32 32 H 0.96995 * 120.00147 * 180.02562 * 16 15 13 33 33 H 1.08994 * 109.56812 * 65.80366 * 21 10 9 34 34 H 1.08996 * 109.56706 * 186.04340 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0020 1.3884 0.0000 4 1 1.4830 2.0390 0.7039 5 6 1.8355 1.8592 -1.4632 6 6 1.8355 0.5618 -2.2983 7 6 2.0019 -0.5750 -1.2638 8 1 1.4740 -1.4817 -1.5592 9 6 3.5075 -0.8076 -1.0590 10 6 4.1937 0.5447 -0.8462 11 1 4.1252 1.1332 -1.7612 12 7 5.6032 0.3285 -0.5102 13 6 6.5264 0.1587 -1.5072 14 1 6.2154 0.1837 -2.5412 15 6 7.8610 -0.0520 -1.1887 16 7 8.2399 -0.0830 0.0714 17 14 9.1192 -0.2914 -2.5485 18 1 9.6786 1.0265 -2.9428 19 1 10.2141 -1.1682 -2.0610 20 1 8.4650 -0.9228 -3.7227 21 6 3.5075 1.2985 0.2967 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 0.8911 2.3894 -1.5859 26 1 2.6692 2.4989 -1.7530 27 1 0.8911 0.4541 -2.8316 28 1 2.6702 0.5620 -2.9993 29 1 3.9249 -1.2941 -1.9406 30 1 3.6638 -1.4381 -0.1836 31 1 5.8824 0.3056 0.4184 32 1 9.1725 -0.2299 0.2939 33 1 3.6637 0.7628 1.2329 34 1 3.9264 2.3016 0.3757 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169096206.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:10 Heat of formation + Delta-G solvation = -3.749104 kcal Electronic energy + Delta-G solvation = -14660.136423 eV Core-core repulsion = 12398.972403 eV Total energy + Delta-G solvation = -2261.164020 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.65388 -36.73679 -34.03318 -32.17117 -32.16131 -30.48585 -26.93493 -25.37616 -24.97618 -22.57721 -21.28188 -19.80324 -18.95582 -17.47668 -16.87295 -16.16066 -15.35431 -15.16293 -14.99005 -14.55736 -14.09780 -13.69068 -13.46017 -13.35649 -13.06624 -12.89424 -12.72145 -12.47020 -12.15059 -12.10299 -11.78777 -11.68300 -11.51793 -11.18979 -11.04175 -10.82018 -9.36323 -8.97707 -7.92791 -5.21058 1.46121 1.48197 1.56444 2.56653 3.05503 3.39799 3.75314 3.80831 3.95096 4.08564 4.26771 4.36376 4.42452 4.49530 4.51838 4.53242 4.68208 4.83723 4.90219 4.96232 5.03333 5.07762 5.15399 5.20177 5.26519 5.38845 5.46059 5.50864 5.64270 5.98006 6.27726 6.31761 7.34683 8.12923 8.36065 9.31170 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.058168 B = 0.008012 C = 0.007755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 481.245392 B = 3494.017212 C = 3609.802609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.524 5.524 3 C 0.072 3.928 4 H 0.109 0.891 5 C -0.145 4.145 6 C -0.145 4.145 7 C 0.070 3.930 8 H 0.099 0.901 9 C -0.114 4.114 10 C 0.175 3.825 11 H 0.046 0.954 12 N -0.740 5.740 13 C -0.236 4.236 14 H 0.074 0.926 15 C -0.079 4.079 16 N -0.972 5.972 17 Si 0.972 3.028 18 H -0.286 1.286 19 H -0.296 1.296 20 H -0.270 1.270 21 C -0.107 4.107 22 H 0.038 0.962 23 H 0.070 0.930 24 H 0.075 0.925 25 H 0.083 0.917 26 H 0.064 0.936 27 H 0.080 0.920 28 H 0.060 0.940 29 H 0.043 0.957 30 H 0.041 0.959 31 H 0.370 0.630 32 H 0.250 0.750 33 H 0.052 0.948 34 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.893 2.459 -2.947 17.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.247 5.247 3 C -0.037 4.037 4 H 0.127 0.873 5 C -0.184 4.184 6 C -0.184 4.184 7 C -0.040 4.040 8 H 0.117 0.883 9 C -0.155 4.155 10 C 0.067 3.933 11 H 0.064 0.936 12 N -0.379 5.379 13 C -0.368 4.368 14 H 0.091 0.909 15 C -0.271 4.271 16 N -0.623 5.623 17 Si 0.801 3.199 18 H -0.213 1.213 19 H -0.223 1.223 20 H -0.195 1.195 21 C -0.146 4.146 22 H 0.057 0.943 23 H 0.089 0.911 24 H 0.093 0.907 25 H 0.101 0.899 26 H 0.083 0.917 27 H 0.099 0.901 28 H 0.079 0.921 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.201 0.799 32 H 0.059 0.941 33 H 0.070 0.930 34 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -16.670 2.129 -2.634 17.011 hybrid contribution 1.060 0.123 -0.833 1.353 sum -15.611 2.252 -3.466 16.149 Atomic orbital electron populations 1.22497 0.86932 1.02472 1.01451 1.65370 1.09160 1.15595 1.34564 1.22998 0.94195 0.89863 0.96631 0.87295 1.22901 1.02452 0.97716 0.95323 1.22879 1.02142 0.94850 0.98541 1.23012 0.94666 0.97786 0.88497 0.88332 1.22217 0.94171 0.99211 0.99876 1.20553 0.82704 0.93739 0.96281 0.93641 1.42716 1.03158 1.86536 1.05518 1.19616 0.88882 1.39186 0.89118 0.90855 1.25557 0.99240 1.03980 0.98306 1.69826 1.16066 1.58875 1.17539 0.85163 0.78786 0.77327 0.78663 1.21344 1.22258 1.19474 1.21882 0.94821 0.99589 0.98304 0.94344 0.91072 0.90664 0.89869 0.91746 0.90090 0.92102 0.93815 0.94019 0.79904 0.94113 0.92968 0.92194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.29 9.45 127.69 1.21 1.50 16 2 N -0.52 -14.19 5.29 -853.44 -4.51 -18.70 16 3 C 0.07 1.93 3.67 45.35 0.17 2.10 16 4 H 0.11 2.46 8.11 -2.39 -0.02 2.44 16 5 C -0.14 -3.51 5.32 31.58 0.17 -3.34 16 6 C -0.15 -3.65 5.29 31.58 0.17 -3.49 16 7 C 0.07 1.98 3.68 45.35 0.17 2.15 16 8 H 0.10 2.51 8.10 -2.39 -0.02 2.49 16 9 C -0.11 -4.34 5.20 30.88 0.16 -4.18 16 10 C 0.18 7.22 2.41 45.08 0.11 7.33 16 11 H 0.05 1.90 5.45 -2.38 -0.01 1.88 16 12 N -0.74 -39.08 5.12 -322.50 -1.65 -40.73 16 13 C -0.24 -13.50 9.92 84.03 0.83 -12.67 16 14 H 0.07 4.03 7.83 -2.91 -0.02 4.01 16 15 C -0.08 -4.66 5.50 84.86 0.47 -4.19 16 16 N -0.97 -61.23 13.06 21.65 0.28 -60.94 16 17 Si 0.97 47.14 29.55 68.60 2.03 49.17 16 18 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 19 H -0.30 -14.45 7.11 99.48 0.71 -13.74 16 20 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 21 C -0.11 -3.77 5.09 30.88 0.16 -3.61 16 22 H 0.04 0.67 6.88 -2.39 -0.02 0.66 16 23 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 24 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 25 H 0.08 1.60 8.10 -2.39 -0.02 1.58 16 26 H 0.06 1.73 7.04 -2.39 -0.02 1.71 16 27 H 0.08 1.65 8.01 -2.39 -0.02 1.63 16 28 H 0.06 1.73 7.03 -2.39 -0.02 1.71 16 29 H 0.04 1.76 8.14 -2.38 -0.02 1.74 16 30 H 0.04 1.75 8.14 -2.38 -0.02 1.73 16 31 H 0.37 21.13 7.80 -92.71 -0.72 20.41 16 32 H 0.25 15.24 8.31 -92.71 -0.77 14.47 16 33 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 Total: -1.00 -64.92 261.40 0.10 -64.82 By element: Atomic # 1 Polarization: 24.44 SS G_CDS: 0.35 Total: 24.79 kcal Atomic # 6 Polarization: -22.00 SS G_CDS: 3.60 Total: -18.40 kcal Atomic # 7 Polarization: -114.50 SS G_CDS: -5.88 Total: -120.38 kcal Atomic # 14 Polarization: 47.14 SS G_CDS: 2.03 Total: 49.17 kcal Total: -64.92 0.10 -64.82 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169096206.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.075 kcal (2) G-P(sol) polarization free energy of solvation -64.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds