Wall clock time and date at job start Sun Mar 29 2020 22:02:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36844 * 119.99820 * 2 1 4 4 H 1.07995 * 119.99907 * 206.20490 * 3 2 1 5 5 C 1.39050 * 119.99665 * 26.20185 * 3 2 1 6 6 N 1.31361 * 120.00369 * 21.01204 * 5 3 2 7 7 Si 1.86805 * 119.99613 * 201.01428 * 5 3 2 8 8 H 1.48494 * 109.47173 * 90.00068 * 7 5 3 9 9 H 1.48499 * 109.47114 * 209.99968 * 7 5 3 10 10 H 1.48499 * 109.46994 * 329.99957 * 7 5 3 11 11 C 1.34776 * 120.00058 * 179.97438 * 2 1 3 12 12 O 1.21680 * 119.99513 * 184.58867 * 11 2 1 13 13 C 1.47020 * 120.00159 * 4.58932 * 11 2 1 14 14 C 1.38101 * 126.45002 * 173.82376 * 13 11 2 15 15 C 1.39651 * 107.63126 * 180.02562 * 14 13 11 16 16 O 1.35996 * 125.66492 * 179.97438 * 15 14 13 17 17 N 1.31241 * 108.67798 * 359.97438 * 15 14 13 18 18 N 1.36726 * 126.44955 * 353.84864 * 13 11 2 19 19 H 0.97002 * 126.09098 * 359.95803 * 18 13 11 20 20 H 1.09005 * 109.46991 * 240.33935 * 1 2 3 21 21 H 1.08994 * 109.47517 * 0.34298 * 1 2 3 22 22 H 1.08995 * 109.47171 * 120.34787 * 1 2 3 23 23 H 0.97000 * 119.99705 * 179.97438 * 6 5 3 24 24 H 1.08004 * 126.17805 * 359.75959 * 14 13 11 25 25 H 0.96701 * 113.99783 * 89.99867 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1492 1.1851 0.0000 4 1 3.1459 1.2332 -0.4130 5 6 1.5610 2.3274 0.5317 6 7 0.5667 2.2187 1.3833 7 14 2.1847 4.0167 0.0349 8 1 1.4378 4.4889 -1.1585 9 1 1.9802 4.9692 1.1557 10 1 3.6320 3.9349 -0.2873 11 6 2.1389 -1.1672 0.0005 12 8 3.3527 -1.1687 0.0848 13 6 1.4074 -2.4385 -0.1008 14 6 1.9623 -3.6962 -0.2320 15 6 0.9140 -4.6168 -0.2934 16 8 1.0482 -5.9639 -0.4235 17 7 -0.2224 -3.9663 -0.2047 18 7 0.0495 -2.5980 -0.0833 19 1 -0.6080 -1.8896 -0.0008 20 1 -0.3633 -0.5086 0.8931 21 1 -0.3634 1.0276 -0.0062 22 1 -0.3633 -0.5192 -0.8868 23 1 0.1567 3.0156 1.7545 24 1 3.0165 -3.9258 -0.2828 25 1 1.1083 -6.4362 0.4182 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193467489.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:36 Heat of formation + Delta-G solvation = 26.946647 kcal Electronic energy + Delta-G solvation = -13739.428058 eV Core-core repulsion = 11142.503005 eV Total energy + Delta-G solvation = -2596.925053 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 211.074 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.90250 -38.36009 -36.80709 -35.08978 -32.18586 -30.23925 -29.69423 -26.69240 -25.31820 -22.34441 -21.31834 -19.60462 -17.78904 -17.38688 -16.61973 -15.70432 -15.06297 -14.74576 -14.35012 -14.13267 -13.23841 -13.05126 -12.99312 -12.16898 -12.03378 -11.69083 -11.59870 -10.98995 -10.61245 -10.50680 -10.06170 -9.28992 -9.03413 -8.86078 -8.40260 -7.94960 -6.66515 -4.15615 1.68993 2.62392 3.01356 3.06194 3.12975 3.17702 3.86279 4.05954 4.21548 4.63653 4.84328 5.30457 5.54808 5.74623 5.91520 6.08809 6.13823 6.65793 6.74584 7.30561 7.38857 7.71777 7.83316 7.89099 8.18081 8.85404 9.03653 9.62097 10.38194 Molecular weight = 211.07amu Principal moments of inertia in cm(-1) A = 0.073590 B = 0.008046 C = 0.007432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 380.394838 B = 3479.043702 C = 3766.517738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.423 5.423 3 C -0.307 4.307 4 H 0.107 0.893 5 C 0.034 3.966 6 N -0.863 5.863 7 Si 0.931 3.069 8 H -0.274 1.274 9 H -0.282 1.282 10 H -0.265 1.265 11 C 0.493 3.507 12 O -0.563 6.563 13 C 0.091 3.909 14 C -0.241 4.241 15 C 0.248 3.752 16 O -0.463 6.463 17 N -0.309 5.309 18 N -0.452 5.452 19 H 0.447 0.553 20 H 0.048 0.952 21 H 0.117 0.883 22 H 0.034 0.966 23 H 0.274 0.726 24 H 0.157 0.843 25 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.159 -5.167 -1.097 6.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.140 5.140 3 C -0.435 4.435 4 H 0.124 0.876 5 C -0.172 4.172 6 N -0.500 5.500 7 Si 0.756 3.244 8 H -0.200 1.200 9 H -0.207 1.207 10 H -0.189 1.189 11 C 0.281 3.719 12 O -0.445 6.445 13 C -0.040 4.040 14 C -0.272 4.272 15 C 0.043 3.957 16 O -0.266 6.266 17 N -0.147 5.147 18 N -0.179 5.179 19 H 0.303 0.697 20 H 0.067 0.933 21 H 0.135 0.865 22 H 0.052 0.948 23 H 0.085 0.915 24 H 0.175 0.825 25 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -3.882 -5.078 -1.532 6.573 hybrid contribution 0.532 0.966 0.464 1.196 sum -3.349 -4.112 -1.068 5.410 Atomic orbital electron populations 1.22029 0.82549 1.06306 0.96901 1.43495 1.04967 1.04921 1.60630 1.19759 1.02425 0.83542 1.37768 0.87573 1.25459 0.96824 1.00797 0.94083 1.69951 1.24494 1.31018 1.24559 0.85848 0.79845 0.80390 0.78302 1.19988 1.20706 1.18928 1.17001 0.87263 0.81400 0.86270 1.90688 1.12539 1.85600 1.55712 1.21948 0.83715 0.97033 1.01301 1.21771 1.00701 0.89871 1.14890 1.19599 0.90101 0.84791 1.01184 1.84870 1.94713 1.12688 1.34345 1.77105 1.22656 0.88711 1.26180 1.47683 1.06255 1.05838 1.58076 0.69725 0.93335 0.86494 0.94821 0.91532 0.82531 0.75010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.35 7.63 59.85 0.46 1.80 15 2 N -0.42 -10.35 2.99 -123.58 -0.37 -10.72 15 3 C -0.31 -8.05 9.13 -15.01 -0.14 -8.19 15 4 H 0.11 2.90 7.58 -52.49 -0.40 2.50 15 5 C 0.03 0.83 4.83 -17.45 -0.08 0.75 15 6 N -0.86 -21.35 11.14 55.50 0.62 -20.74 15 7 Si 0.93 19.15 29.60 -169.99 -5.03 14.12 15 8 H -0.27 -5.50 7.11 56.52 0.40 -5.10 15 9 H -0.28 -5.75 7.11 56.52 0.40 -5.35 15 10 H -0.27 -5.52 7.11 56.52 0.40 -5.11 15 11 C 0.49 12.16 7.60 -12.70 -0.10 12.07 15 12 O -0.56 -15.62 16.67 5.21 0.09 -15.53 15 13 C 0.09 1.91 6.85 -82.18 -0.56 1.35 15 14 C -0.24 -4.63 10.64 -39.10 -0.42 -5.05 15 15 C 0.25 4.37 8.41 -17.28 -0.15 4.23 15 16 O -0.46 -6.62 13.66 -19.73 -0.27 -6.89 15 17 N -0.31 -5.70 12.68 30.45 0.39 -5.31 15 18 N -0.45 -8.36 6.58 33.41 0.22 -8.14 15 19 H 0.45 7.37 4.56 -182.65 -0.83 6.54 15 20 H 0.05 0.93 6.89 -51.93 -0.36 0.57 15 21 H 0.12 2.51 5.60 -51.93 -0.29 2.22 15 22 H 0.03 0.59 6.68 -51.93 -0.35 0.24 15 23 H 0.27 6.35 8.31 -40.82 -0.34 6.01 15 24 H 0.16 2.86 8.06 -52.48 -0.42 2.44 15 25 H 0.39 3.41 9.06 45.56 0.41 3.82 15 LS Contribution 226.47 15.07 3.41 3.41 Total: -1.00 -30.75 226.47 -3.30 -34.06 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: -1.37 Total: 8.79 kcal Atomic # 6 Polarization: 7.93 SS G_CDS: -0.99 Total: 6.95 kcal Atomic # 7 Polarization: -45.76 SS G_CDS: 0.85 Total: -44.91 kcal Atomic # 8 Polarization: -22.24 SS G_CDS: -0.18 Total: -22.42 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -5.03 Total: 14.12 kcal Total LS contribution 3.41 Total: 3.41 kcal Total: -30.75 -3.30 -34.06 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193467489.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.004 kcal (2) G-P(sol) polarization free energy of solvation -30.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.058 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds