Wall clock time and date at job start Sun Mar 29 2020 22:02:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36844 * 119.99820 * 2 1 4 4 H 1.07995 * 119.99907 * 206.20490 * 3 2 1 5 5 C 1.39050 * 119.99665 * 26.20185 * 3 2 1 6 6 N 1.31361 * 120.00369 * 21.01204 * 5 3 2 7 7 Si 1.86805 * 119.99613 * 201.01428 * 5 3 2 8 8 H 1.48494 * 109.47173 * 90.00068 * 7 5 3 9 9 H 1.48499 * 109.47114 * 209.99968 * 7 5 3 10 10 H 1.48499 * 109.46994 * 329.99957 * 7 5 3 11 11 C 1.34776 * 120.00058 * 179.97438 * 2 1 3 12 12 O 1.21680 * 119.99513 * 184.58867 * 11 2 1 13 13 C 1.47020 * 120.00159 * 4.58932 * 11 2 1 14 14 C 1.38101 * 126.45002 * 173.82376 * 13 11 2 15 15 C 1.39651 * 107.63126 * 180.02562 * 14 13 11 16 16 O 1.35996 * 125.66492 * 179.97438 * 15 14 13 17 17 N 1.31241 * 108.67798 * 359.97438 * 15 14 13 18 18 N 1.36726 * 126.44955 * 353.84864 * 13 11 2 19 19 H 0.97002 * 126.09098 * 359.95803 * 18 13 11 20 20 H 1.09005 * 109.46991 * 240.33935 * 1 2 3 21 21 H 1.08994 * 109.47517 * 0.34298 * 1 2 3 22 22 H 1.08995 * 109.47171 * 120.34787 * 1 2 3 23 23 H 0.97000 * 119.99705 * 179.97438 * 6 5 3 24 24 H 1.08004 * 126.17805 * 359.75959 * 14 13 11 25 25 H 0.96701 * 113.99783 * 89.99867 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1492 1.1851 0.0000 4 1 3.1459 1.2332 -0.4130 5 6 1.5610 2.3274 0.5317 6 7 0.5667 2.2187 1.3833 7 14 2.1847 4.0167 0.0349 8 1 1.4378 4.4889 -1.1585 9 1 1.9802 4.9692 1.1557 10 1 3.6320 3.9349 -0.2873 11 6 2.1389 -1.1672 0.0005 12 8 3.3527 -1.1687 0.0848 13 6 1.4074 -2.4385 -0.1008 14 6 1.9623 -3.6962 -0.2320 15 6 0.9140 -4.6168 -0.2934 16 8 1.0482 -5.9639 -0.4235 17 7 -0.2224 -3.9663 -0.2047 18 7 0.0495 -2.5980 -0.0833 19 1 -0.6080 -1.8896 -0.0008 20 1 -0.3633 -0.5086 0.8931 21 1 -0.3634 1.0276 -0.0062 22 1 -0.3633 -0.5192 -0.8868 23 1 0.1567 3.0156 1.7545 24 1 3.0165 -3.9258 -0.2828 25 1 1.1083 -6.4362 0.4182 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001193467489.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:36 Heat of formation + Delta-G solvation = 0.694630 kcal Electronic energy + Delta-G solvation = -13740.566431 eV Core-core repulsion = 11142.503005 eV Total energy + Delta-G solvation = -2598.063426 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 211.074 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -42.42677 -40.13608 -38.08472 -36.98868 -34.04338 -31.78848 -31.24690 -28.42496 -27.14233 -24.03006 -22.74052 -21.20936 -19.52350 -18.94992 -18.20285 -17.41032 -16.72226 -16.43671 -16.05699 -15.73962 -14.82709 -14.63246 -14.51055 -13.91930 -13.56903 -13.44893 -13.24491 -12.60909 -12.52752 -12.14181 -11.45772 -11.11042 -10.79851 -10.49165 -10.00447 -9.76638 -8.54189 -6.13326 0.08952 1.20753 1.43615 1.44005 1.54402 1.57567 2.17925 2.25729 2.63056 2.94482 3.09065 3.67207 4.06160 4.18116 4.37767 4.48862 4.72374 5.05964 5.29759 5.35215 5.86238 6.01263 6.27351 6.39691 6.72220 6.94152 7.15275 7.73261 8.49934 Molecular weight = 211.07amu Principal moments of inertia in cm(-1) A = 0.073590 B = 0.008046 C = 0.007432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 380.394838 B = 3479.043702 C = 3766.517738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.432 5.432 3 C -0.349 4.349 4 H 0.081 0.919 5 C 0.008 3.992 6 N -0.877 5.877 7 Si 0.995 3.005 8 H -0.260 1.260 9 H -0.273 1.273 10 H -0.273 1.273 11 C 0.483 3.517 12 O -0.609 6.609 13 C 0.072 3.928 14 C -0.238 4.238 15 C 0.261 3.739 16 O -0.460 6.460 17 N -0.307 5.307 18 N -0.443 5.443 19 H 0.454 0.546 20 H 0.060 0.940 21 H 0.105 0.895 22 H 0.064 0.936 23 H 0.283 0.717 24 H 0.162 0.838 25 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.267 -5.509 -1.221 7.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.148 5.148 3 C -0.476 4.476 4 H 0.099 0.901 5 C -0.197 4.197 6 N -0.513 5.513 7 Si 0.817 3.183 8 H -0.185 1.185 9 H -0.198 1.198 10 H -0.198 1.198 11 C 0.272 3.728 12 O -0.495 6.495 13 C -0.059 4.059 14 C -0.270 4.270 15 C 0.056 3.944 16 O -0.267 6.267 17 N -0.144 5.144 18 N -0.170 5.170 19 H 0.311 0.689 20 H 0.078 0.922 21 H 0.124 0.876 22 H 0.082 0.918 23 H 0.093 0.907 24 H 0.179 0.821 25 H 0.282 0.718 Dipole moment (debyes) X Y Z Total from point charges -5.045 -5.437 -1.632 7.595 hybrid contribution 0.843 0.947 0.537 1.377 sum -4.202 -4.490 -1.095 6.246 Atomic orbital electron populations 1.22105 0.80233 1.06194 0.98851 1.43716 1.06534 1.04537 1.60045 1.19731 1.02554 0.85201 1.40136 0.90071 1.26196 0.96721 1.03478 0.93256 1.69987 1.24708 1.32382 1.24245 0.84907 0.78840 0.76000 0.78503 1.18501 1.19796 1.19790 1.17456 0.87091 0.82569 0.85665 1.90634 1.14489 1.86571 1.57791 1.21435 0.84790 0.95896 1.03764 1.21978 1.01499 0.89725 1.13770 1.19549 0.89097 0.85959 0.99791 1.84840 1.94432 1.10804 1.36574 1.77123 1.22872 0.88403 1.26021 1.47596 1.05341 1.06233 1.57867 0.68914 0.92225 0.87635 0.91810 0.90717 0.82058 0.71791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.77 7.63 127.77 0.97 3.74 15 2 N -0.43 -21.45 2.99 -663.11 -1.98 -23.43 15 3 C -0.35 -18.72 9.13 84.11 0.77 -17.95 15 4 H 0.08 4.66 7.58 -2.91 -0.02 4.64 15 5 C 0.01 0.40 4.83 84.96 0.41 0.81 15 6 N -0.88 -42.83 11.14 21.68 0.24 -42.58 15 7 Si 1.00 38.90 29.60 68.60 2.03 40.93 15 8 H -0.26 -9.58 7.11 99.48 0.71 -8.87 15 9 H -0.27 -10.25 7.11 99.48 0.71 -9.54 15 10 H -0.27 -10.97 7.11 99.48 0.71 -10.27 15 11 C 0.48 24.30 7.60 86.55 0.66 24.96 15 12 O -0.61 -35.01 16.67 -4.28 -0.07 -35.08 15 13 C 0.07 2.98 6.85 40.65 0.28 3.25 15 14 C -0.24 -8.85 10.64 22.58 0.24 -8.61 15 15 C 0.26 8.53 8.41 85.12 0.72 9.25 15 16 O -0.46 -11.59 13.66 -93.51 -1.28 -12.86 15 17 N -0.31 -10.51 12.68 -170.77 -2.16 -12.68 15 18 N -0.44 -15.64 6.58 -48.21 -0.32 -15.95 15 19 H 0.45 14.15 4.56 -213.36 -0.97 13.18 15 20 H 0.06 2.21 6.89 -2.38 -0.02 2.20 15 21 H 0.11 4.47 5.60 -2.39 -0.01 4.46 15 22 H 0.06 2.13 6.68 -2.39 -0.02 2.11 15 23 H 0.28 12.73 8.31 -92.71 -0.77 11.96 15 24 H 0.16 5.76 8.06 -2.91 -0.02 5.74 15 25 H 0.42 5.69 9.06 -74.06 -0.67 5.02 15 Total: -1.00 -65.70 226.47 0.12 -65.58 By element: Atomic # 1 Polarization: 21.00 SS G_CDS: -0.39 Total: 20.62 kcal Atomic # 6 Polarization: 11.41 SS G_CDS: 4.05 Total: 15.46 kcal Atomic # 7 Polarization: -90.42 SS G_CDS: -4.22 Total: -94.65 kcal Atomic # 8 Polarization: -46.59 SS G_CDS: -1.35 Total: -47.94 kcal Atomic # 14 Polarization: 38.90 SS G_CDS: 2.03 Total: 40.93 kcal Total: -65.70 0.12 -65.58 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193467489.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.277 kcal (2) G-P(sol) polarization free energy of solvation -65.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.583 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds