Wall clock time and date at job start Sun Mar 29 2020 21:44:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46900 * 109.46738 * 2 1 4 4 C 1.46894 * 110.99883 * 163.86377 * 3 2 1 5 5 C 1.50695 * 109.47229 * 293.95058 * 4 3 2 6 6 H 1.08001 * 119.99957 * 0.02562 * 5 4 3 7 7 C 1.37879 * 120.00107 * 180.02562 * 5 4 3 8 8 N 1.31515 * 119.99918 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99973 * 179.97438 * 7 5 4 10 10 H 1.48511 * 109.47108 * 90.00292 * 9 7 5 11 11 H 1.48498 * 109.47520 * 209.99974 * 9 7 5 12 12 H 1.48496 * 109.47666 * 330.00337 * 9 7 5 13 13 C 1.46901 * 110.99985 * 287.81506 * 3 2 1 14 14 C 1.50698 * 109.47474 * 164.07223 * 13 3 2 15 15 C 1.35353 * 126.91129 * 265.32672 * 14 13 3 16 16 N 1.33764 * 106.49840 * 179.90542 * 15 14 13 17 17 N 1.28635 * 108.88361 * 0.36290 * 16 15 14 18 18 N 1.28716 * 110.18083 * 359.76987 * 17 16 15 19 19 H 0.96995 * 125.87034 * 180.02562 * 18 17 16 20 20 H 1.08999 * 109.47034 * 305.95775 * 1 2 3 21 21 H 1.08991 * 109.47561 * 65.96403 * 1 2 3 22 22 H 1.09001 * 109.46606 * 185.96407 * 1 2 3 23 23 H 1.08996 * 109.46873 * 239.99749 * 2 1 3 24 24 H 1.08999 * 109.47253 * 119.99354 * 2 1 3 25 25 H 1.09005 * 109.47402 * 53.95340 * 4 3 2 26 26 H 1.09007 * 109.47253 * 173.94771 * 4 3 2 27 27 H 0.97006 * 119.99616 * 180.02562 * 8 7 5 28 28 H 1.08996 * 109.47289 * 284.07371 * 13 3 2 29 29 H 1.09010 * 109.47048 * 44.06924 * 13 3 2 30 30 H 1.08001 * 126.75044 * 0.03235 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4371 1.4423 0.3811 5 6 3.5893 1.0083 1.8162 6 1 2.7201 0.7185 2.3878 7 6 4.8384 0.9812 2.3994 8 7 5.8969 1.3346 1.7035 9 14 5.0270 0.4439 4.1785 10 1 5.2435 -1.0243 4.2319 11 1 6.1914 1.1382 4.7846 12 1 3.7962 0.7905 4.9335 13 6 1.7995 2.0212 -1.3057 14 6 1.9405 3.5151 -1.1668 15 6 0.9459 4.4100 -0.9616 16 7 1.5250 5.6142 -0.9002 17 7 2.7932 5.4751 -1.0646 18 7 3.0862 4.2324 -1.2280 19 1 3.9754 3.8721 -1.3702 20 1 -0.3633 0.6034 0.8318 21 1 -0.3634 0.4185 -0.9385 22 1 -0.3632 -1.0221 0.1068 23 1 1.8933 -0.5139 -0.8899 24 1 1.8934 -0.5137 0.8900 25 1 4.0136 0.7778 -0.2625 26 1 3.8024 2.4632 0.2696 27 1 6.7757 1.3152 2.1138 28 1 2.5362 1.6515 -2.0188 29 1 0.7973 1.7824 -1.6619 30 1 -0.1078 4.1939 -0.8643 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001203206033.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:21 Heat of formation + Delta-G solvation = 92.079967 kcal Electronic energy + Delta-G solvation = -13922.667758 eV Core-core repulsion = 11562.118854 eV Total energy + Delta-G solvation = -2360.548904 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.83948 -37.21756 -32.94422 -32.82126 -31.65321 -29.82970 -27.40587 -24.90042 -22.76163 -22.27595 -21.59356 -20.09428 -17.75538 -16.56666 -15.72259 -15.30378 -14.50091 -14.29661 -14.11237 -13.60517 -12.99251 -12.57931 -12.20416 -12.06383 -11.39991 -11.19522 -11.07371 -10.82758 -10.65242 -10.63923 -10.27952 -10.14077 -9.94070 -9.36208 -8.76762 -8.56586 -7.49012 -6.16725 -4.17727 2.00214 2.96115 3.21937 3.24787 3.31827 3.36208 4.33126 4.75723 4.97850 5.07915 5.20531 5.35467 5.57725 5.71206 5.78679 5.86287 5.96796 6.11444 6.23569 6.51493 6.57726 6.64774 7.01152 7.09904 7.26407 7.63835 7.86651 7.99245 8.34370 8.86511 8.89210 9.47485 10.94410 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.026757 B = 0.010372 C = 0.008277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.208759 B = 2699.020733 C = 3381.865785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.057 3.943 3 N -0.532 5.532 4 C 0.189 3.811 5 C -0.509 4.509 6 H 0.065 0.935 7 C 0.056 3.944 8 N -0.899 5.899 9 Si 0.899 3.101 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.272 1.272 13 C 0.118 3.882 14 C 0.021 3.979 15 C -0.047 4.047 16 N -0.277 5.277 17 N -0.091 5.091 18 N -0.381 5.381 19 H 0.448 0.552 20 H 0.062 0.938 21 H 0.044 0.956 22 H 0.050 0.950 23 H 0.021 0.979 24 H 0.089 0.911 25 H -0.007 1.007 26 H 0.025 0.975 27 H 0.263 0.737 28 H 0.039 0.961 29 H 0.094 0.906 30 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.454 -1.381 -6.432 9.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.071 4.071 3 N -0.257 5.257 4 C 0.064 3.936 5 C -0.547 4.547 6 H 0.084 0.916 7 C -0.145 4.145 8 N -0.539 5.539 9 Si 0.727 3.273 10 H -0.206 1.206 11 H -0.212 1.212 12 H -0.197 1.197 13 C -0.012 4.012 14 C -0.114 4.114 15 C -0.205 4.205 16 N -0.144 5.144 17 N -0.072 5.072 18 N -0.102 5.102 19 H 0.294 0.706 20 H 0.081 0.919 21 H 0.063 0.937 22 H 0.069 0.931 23 H 0.039 0.961 24 H 0.108 0.892 25 H 0.010 0.990 26 H 0.043 0.957 27 H 0.072 0.928 28 H 0.057 0.943 29 H 0.113 0.887 30 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -7.098 0.419 -5.954 9.274 hybrid contribution 0.969 -2.056 0.294 2.292 sum -6.130 -1.637 -5.660 8.502 Atomic orbital electron populations 1.21830 0.96293 1.00745 1.01552 1.21982 0.94343 0.89361 1.01364 1.62164 1.23255 1.16574 1.23756 1.19807 0.80795 0.96445 0.96529 1.21103 0.93016 1.44330 0.96300 0.91646 1.24983 0.95785 0.95378 0.98371 1.69923 0.98736 1.48295 1.36899 0.86471 0.77847 0.78536 0.84471 1.20632 1.21185 1.19676 1.20559 1.01991 0.85728 0.92938 1.22221 0.86079 0.96888 1.06184 1.23211 1.00887 0.88428 1.07954 1.74986 0.99061 1.23723 1.16599 1.78181 1.10556 0.98889 1.19555 1.45186 1.11050 1.06142 1.47832 0.70577 0.91892 0.93668 0.93118 0.96069 0.89217 0.98969 0.95727 0.92782 0.94277 0.88741 0.79754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.87 37.16 0.37 -1.63 16 2 C 0.06 0.99 5.53 -3.82 -0.02 0.97 16 3 N -0.53 -10.33 4.40 -237.52 -1.04 -11.37 16 4 C 0.19 4.53 4.57 -4.98 -0.02 4.51 16 5 C -0.51 -13.67 8.28 -34.44 -0.29 -13.96 16 6 H 0.07 1.75 7.26 -52.49 -0.38 1.37 16 7 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 8 N -0.90 -25.65 13.29 55.43 0.74 -24.91 16 9 Si 0.90 21.23 29.54 -169.99 -5.02 16.21 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 13 C 0.12 1.85 5.39 -4.98 -0.03 1.83 16 14 C 0.02 0.36 6.20 -82.09 -0.51 -0.15 16 15 C -0.05 -0.78 11.99 -17.74 -0.21 -0.99 16 16 N -0.28 -5.23 12.41 30.23 0.38 -4.86 16 17 N -0.09 -1.74 13.38 60.35 0.81 -0.93 16 18 N -0.38 -6.59 6.20 33.54 0.21 -6.39 16 19 H 0.45 7.01 8.47 -190.40 -1.61 5.40 16 20 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 21 H 0.04 0.54 6.76 -51.93 -0.35 0.19 16 22 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 23 H 0.02 0.34 8.05 -51.93 -0.42 -0.07 16 24 H 0.09 1.75 6.59 -51.93 -0.34 1.41 16 25 H -0.01 -0.19 8.12 -51.93 -0.42 -0.61 16 26 H 0.02 0.62 6.16 -51.92 -0.32 0.30 16 27 H 0.26 7.14 8.31 -40.82 -0.34 6.81 16 28 H 0.04 0.59 8.05 -51.93 -0.42 0.17 16 29 H 0.09 1.22 6.40 -51.92 -0.33 0.89 16 30 H 0.19 2.42 8.06 -52.49 -0.42 2.00 16 LS Contribution 256.33 15.07 3.86 3.86 Total: -1.00 -30.38 256.33 -5.88 -36.26 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: -5.00 Total: 0.10 kcal Atomic # 6 Polarization: -7.16 SS G_CDS: -0.81 Total: -7.97 kcal Atomic # 7 Polarization: -49.55 SS G_CDS: 1.08 Total: -48.46 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -30.38 -5.88 -36.26 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203206033.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.342 kcal (2) G-P(sol) polarization free energy of solvation -30.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.262 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds