Wall clock time and date at job start Sun Mar 29 2020 21:44:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46900 * 109.46738 * 2 1 4 4 C 1.46894 * 110.99883 * 163.86377 * 3 2 1 5 5 C 1.50695 * 109.47229 * 293.95058 * 4 3 2 6 6 H 1.08001 * 119.99957 * 0.02562 * 5 4 3 7 7 C 1.37879 * 120.00107 * 180.02562 * 5 4 3 8 8 N 1.31515 * 119.99918 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99973 * 179.97438 * 7 5 4 10 10 H 1.48511 * 109.47108 * 90.00292 * 9 7 5 11 11 H 1.48498 * 109.47520 * 209.99974 * 9 7 5 12 12 H 1.48496 * 109.47666 * 330.00337 * 9 7 5 13 13 C 1.46901 * 110.99985 * 287.81506 * 3 2 1 14 14 C 1.50698 * 109.47474 * 164.07223 * 13 3 2 15 15 C 1.35353 * 126.91129 * 265.32672 * 14 13 3 16 16 N 1.33764 * 106.49840 * 179.90542 * 15 14 13 17 17 N 1.28635 * 108.88361 * 0.36290 * 16 15 14 18 18 N 1.28716 * 110.18083 * 359.76987 * 17 16 15 19 19 H 0.96995 * 125.87034 * 180.02562 * 18 17 16 20 20 H 1.08999 * 109.47034 * 305.95775 * 1 2 3 21 21 H 1.08991 * 109.47561 * 65.96403 * 1 2 3 22 22 H 1.09001 * 109.46606 * 185.96407 * 1 2 3 23 23 H 1.08996 * 109.46873 * 239.99749 * 2 1 3 24 24 H 1.08999 * 109.47253 * 119.99354 * 2 1 3 25 25 H 1.09005 * 109.47402 * 53.95340 * 4 3 2 26 26 H 1.09007 * 109.47253 * 173.94771 * 4 3 2 27 27 H 0.97006 * 119.99616 * 180.02562 * 8 7 5 28 28 H 1.08996 * 109.47289 * 284.07371 * 13 3 2 29 29 H 1.09010 * 109.47048 * 44.06924 * 13 3 2 30 30 H 1.08001 * 126.75044 * 0.03235 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4371 1.4423 0.3811 5 6 3.5893 1.0083 1.8162 6 1 2.7201 0.7185 2.3878 7 6 4.8384 0.9812 2.3994 8 7 5.8969 1.3346 1.7035 9 14 5.0270 0.4439 4.1785 10 1 5.2435 -1.0243 4.2319 11 1 6.1914 1.1382 4.7846 12 1 3.7962 0.7905 4.9335 13 6 1.7995 2.0212 -1.3057 14 6 1.9405 3.5151 -1.1668 15 6 0.9459 4.4100 -0.9616 16 7 1.5250 5.6142 -0.9002 17 7 2.7932 5.4751 -1.0646 18 7 3.0862 4.2324 -1.2280 19 1 3.9754 3.8721 -1.3702 20 1 -0.3633 0.6034 0.8318 21 1 -0.3634 0.4185 -0.9385 22 1 -0.3632 -1.0221 0.1068 23 1 1.8933 -0.5139 -0.8899 24 1 1.8934 -0.5137 0.8900 25 1 4.0136 0.7778 -0.2625 26 1 3.8024 2.4632 0.2696 27 1 6.7757 1.3152 2.1138 28 1 2.5362 1.6515 -2.0188 29 1 0.7973 1.7824 -1.6619 30 1 -0.1078 4.1939 -0.8643 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001203206033.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:21 Heat of formation + Delta-G solvation = 69.687446 kcal Electronic energy + Delta-G solvation = -13923.638770 eV Core-core repulsion = 11562.118854 eV Total energy + Delta-G solvation = -2361.519916 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -44.20048 -38.71576 -34.85071 -34.29151 -32.97472 -31.31844 -29.07779 -26.47503 -24.34267 -23.77610 -22.93293 -21.55875 -19.12721 -18.55180 -17.13598 -16.95800 -16.14957 -15.77147 -15.52753 -15.00268 -14.29559 -14.19822 -13.96755 -13.53495 -12.85626 -12.71922 -12.63387 -12.50426 -12.32382 -12.02369 -11.82983 -11.64425 -11.45729 -11.25766 -10.63860 -10.12947 -9.04571 -8.25029 -6.32297 0.63966 1.37514 1.39575 1.49849 1.61945 1.92623 2.37238 3.09335 3.34596 3.65469 3.79472 4.12527 4.33291 4.47181 4.53285 4.61406 4.78843 4.82949 5.07429 5.11228 5.19629 5.27747 5.37692 5.54018 5.63407 5.93103 6.02984 6.30710 6.58341 6.83225 7.37063 7.49123 8.85388 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.026757 B = 0.010372 C = 0.008277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.208759 B = 2699.020733 C = 3381.865785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.055 3.945 3 N -0.541 5.541 4 C 0.202 3.798 5 C -0.522 4.522 6 H 0.061 0.939 7 C 0.005 3.995 8 N -0.931 5.931 9 Si 0.960 3.040 10 H -0.271 1.271 11 H -0.286 1.286 12 H -0.269 1.269 13 C 0.121 3.879 14 C 0.015 3.985 15 C -0.042 4.042 16 N -0.299 5.299 17 N -0.117 5.117 18 N -0.380 5.380 19 H 0.451 0.549 20 H 0.052 0.948 21 H 0.070 0.930 22 H 0.069 0.931 23 H 0.031 0.969 24 H 0.059 0.941 25 H -0.031 1.031 26 H 0.010 0.990 27 H 0.263 0.737 28 H 0.047 0.953 29 H 0.133 0.867 30 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.116 -2.162 -6.546 11.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.072 4.072 3 N -0.266 5.266 4 C 0.075 3.925 5 C -0.560 4.560 6 H 0.079 0.921 7 C -0.194 4.194 8 N -0.571 5.571 9 Si 0.785 3.215 10 H -0.196 1.196 11 H -0.211 1.211 12 H -0.193 1.193 13 C -0.008 4.008 14 C -0.120 4.120 15 C -0.201 4.201 16 N -0.166 5.166 17 N -0.097 5.097 18 N -0.102 5.102 19 H 0.298 0.702 20 H 0.071 0.929 21 H 0.088 0.912 22 H 0.088 0.912 23 H 0.049 0.951 24 H 0.077 0.923 25 H -0.013 1.013 26 H 0.028 0.972 27 H 0.072 0.928 28 H 0.065 0.935 29 H 0.151 0.849 30 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -8.774 -0.360 -6.076 10.678 hybrid contribution 1.444 -1.840 0.283 2.356 sum -7.330 -2.200 -5.793 9.598 Atomic orbital electron populations 1.21745 0.92961 1.02123 1.02479 1.22029 0.96944 0.87910 1.00363 1.62068 1.19965 1.18210 1.26385 1.19478 0.83479 0.94671 0.94830 1.21458 0.92879 1.43848 0.97817 0.92125 1.25790 0.95657 0.95599 1.02305 1.70028 0.99090 1.49512 1.38490 0.85515 0.77660 0.78511 0.79785 1.19596 1.21147 1.19311 1.20717 1.04370 0.84555 0.91207 1.22539 0.85873 0.97500 1.06089 1.23829 1.02411 0.87380 1.06440 1.74959 0.99198 1.25095 1.17333 1.78158 1.10964 0.99681 1.20884 1.45267 1.11631 1.05986 1.47317 0.70195 0.92866 0.91155 0.91183 0.95114 0.92264 1.01313 0.97214 0.92789 0.93509 0.84911 0.76341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.23 9.87 71.98 0.71 -2.52 16 2 C 0.06 1.80 5.53 86.30 0.48 2.28 16 3 N -0.54 -20.25 4.40 -905.37 -3.98 -24.23 16 4 C 0.20 9.73 4.57 85.56 0.39 10.12 16 5 C -0.52 -28.21 8.28 25.60 0.21 -28.00 16 6 H 0.06 3.26 7.26 -2.91 -0.02 3.24 16 7 C 0.00 0.27 5.46 84.66 0.46 0.73 16 8 N -0.93 -53.79 13.29 21.45 0.28 -53.51 16 9 Si 0.96 43.58 29.54 68.60 2.03 45.61 16 10 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 11 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 12 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 13 C 0.12 3.49 5.39 85.56 0.46 3.95 16 14 C 0.02 0.49 6.20 41.36 0.26 0.75 16 15 C -0.04 -1.30 11.99 83.73 1.00 -0.30 16 16 N -0.30 -11.04 12.41 -58.26 -0.72 -11.76 16 17 N -0.12 -4.43 13.38 37.02 0.50 -3.94 16 18 N -0.38 -13.04 6.20 -47.79 -0.30 -13.34 16 19 H 0.45 14.34 8.47 -219.96 -1.86 12.47 16 20 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 21 H 0.07 1.33 6.76 -2.39 -0.02 1.31 16 22 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 23 H 0.03 0.94 8.05 -2.39 -0.02 0.92 16 24 H 0.06 2.28 6.59 -2.39 -0.02 2.27 16 25 H -0.03 -1.60 8.12 -2.38 -0.02 -1.62 16 26 H 0.01 0.50 6.16 -2.38 -0.01 0.49 16 27 H 0.26 14.48 8.31 -92.70 -0.77 13.71 16 28 H 0.05 1.31 8.05 -2.39 -0.02 1.29 16 29 H 0.13 2.82 6.40 -2.38 -0.02 2.81 16 30 H 0.22 4.91 8.06 -2.91 -0.02 4.88 16 Total: -1.00 -65.14 256.33 1.06 -64.07 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: -0.72 Total: 10.08 kcal Atomic # 6 Polarization: -16.96 SS G_CDS: 3.97 Total: -12.99 kcal Atomic # 7 Polarization: -102.55 SS G_CDS: -4.22 Total: -106.77 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Total: -65.14 1.06 -64.07 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203206033.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.760 kcal (2) G-P(sol) polarization free energy of solvation -65.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.073 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds