Wall clock time and date at job start Sun Mar 29 2020 21:34:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.52995 * 109.47180 * 9.28117 * 3 2 1 5 5 O 1.42901 * 109.47345 * 179.97438 * 4 3 2 6 6 C 1.42898 * 114.00403 * 180.02562 * 5 4 3 7 7 H 1.08998 * 110.88442 * 32.42780 * 6 5 4 8 8 C 1.55158 * 111.03971 * 156.33359 * 6 5 4 9 9 C 1.54316 * 102.94139 * 153.59087 * 8 6 5 10 10 N 1.47020 * 107.27568 * 337.80546 * 9 8 6 11 11 C 1.36938 * 125.65236 * 178.97773 * 10 9 8 12 12 H 1.07994 * 120.00035 * 179.97438 * 11 10 9 13 13 C 1.38811 * 119.99774 * 359.95644 * 11 10 9 14 14 N 1.31617 * 120.00082 * 0.02562 * 13 11 10 15 15 Si 1.86807 * 119.99981 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.46763 * 0.02562 * 15 13 11 17 17 H 1.48496 * 109.46850 * 120.00328 * 15 13 11 18 18 H 1.48497 * 109.47123 * 240.00366 * 15 13 11 19 19 C 1.47422 * 108.70191 * 358.94070 * 10 9 8 20 20 H 1.09007 * 109.47110 * 249.28508 * 3 2 1 21 21 H 1.08994 * 109.46970 * 129.28349 * 3 2 1 22 22 H 1.09000 * 109.47107 * 59.99960 * 4 3 2 23 23 H 1.08999 * 109.47526 * 300.00453 * 4 3 2 24 24 H 1.09003 * 110.71801 * 271.95608 * 8 6 5 25 25 H 1.08999 * 110.71744 * 35.04646 * 8 6 5 26 26 H 1.09000 * 109.88340 * 97.22892 * 9 8 6 27 27 H 1.09005 * 109.88355 * 218.23652 * 9 8 6 28 28 H 0.97006 * 120.00279 * 180.02562 * 14 13 11 29 29 H 1.08998 * 110.36873 * 265.28987 * 19 10 9 30 30 H 1.09005 * 110.36491 * 142.96394 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1187 -1.4227 -0.2326 5 8 4.5477 -1.4220 -0.2332 6 6 5.1295 -2.7099 -0.4444 7 1 4.5024 -3.3174 -1.0969 8 6 6.5675 -2.5850 -1.0137 9 6 7.2407 -3.8908 -0.5415 10 7 6.4810 -4.3789 0.6187 11 6 6.7440 -5.5254 1.3199 12 1 6.1243 -5.7977 2.1615 13 6 7.8067 -6.3376 0.9489 14 7 8.5620 -6.0056 -0.0766 15 14 8.1659 -7.9012 1.9059 16 1 7.1783 -8.0464 3.0054 17 1 8.0693 -9.0712 0.9966 18 1 9.5351 -7.8291 2.4761 19 6 5.3898 -3.4293 0.9027 20 1 2.9712 0.3643 0.9613 21 1 2.9710 0.6515 -0.7954 22 1 2.7555 -1.7864 -1.1938 23 1 2.7556 -2.0736 0.5627 24 1 6.5480 -2.5329 -2.1023 25 1 7.0731 -1.7143 -0.5963 26 1 7.2140 -4.6317 -1.3405 27 1 8.2735 -3.6926 -0.2544 28 1 9.3044 -6.5734 -0.3362 29 1 5.6995 -2.7116 1.6623 30 1 4.4965 -3.9637 1.2262 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205609713.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:34:35 Heat of formation + Delta-G solvation = 3.529695 kcal Electronic energy + Delta-G solvation = -13420.057464 eV Core-core repulsion = 11023.375981 eV Total energy + Delta-G solvation = -2396.681483 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.57847 -37.01362 -35.92200 -32.55995 -31.46474 -29.15181 -27.08916 -24.58504 -23.63176 -20.42213 -20.09765 -17.78476 -16.90075 -16.44991 -15.85653 -14.84033 -14.55572 -14.29415 -13.76741 -13.33016 -12.99922 -12.69639 -12.34405 -12.23861 -11.86168 -11.60970 -11.27299 -10.95237 -10.89252 -10.71361 -10.24221 -10.08164 -9.82435 -9.74089 -9.18490 -8.62109 -6.86008 -5.73370 -3.07462 2.46735 2.58512 3.39085 3.43846 3.46579 3.48166 4.26821 4.50767 4.83675 4.92647 5.22351 5.36886 5.40511 5.51539 5.63080 5.66359 5.72591 5.81768 6.23180 6.43406 6.50477 6.64217 6.66918 7.33912 7.48975 7.54034 7.59029 7.80644 8.23284 9.19583 9.79690 10.44742 11.38402 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.061070 B = 0.005913 C = 0.005502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 458.378878 B = 4734.135227 C = 5087.953926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C 0.214 3.786 3 C -0.025 4.025 4 C 0.066 3.934 5 O -0.376 6.376 6 C 0.073 3.927 7 H 0.068 0.932 8 C -0.137 4.137 9 C 0.177 3.823 10 N -0.604 5.604 11 C -0.229 4.229 12 H 0.079 0.921 13 C -0.008 4.008 14 N -0.922 5.922 15 Si 0.913 3.087 16 H -0.280 1.280 17 H -0.290 1.290 18 H -0.290 1.290 19 C 0.117 3.883 20 H 0.118 0.882 21 H 0.117 0.883 22 H 0.055 0.945 23 H 0.057 0.943 24 H 0.064 0.936 25 H 0.068 0.932 26 H 0.048 0.952 27 H 0.047 0.953 28 H 0.252 0.748 29 H 0.029 0.971 30 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.716 9.487 -1.641 11.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.115 5.115 2 C -0.104 4.104 3 C -0.065 4.065 4 C -0.012 4.012 5 O -0.295 6.295 6 C 0.015 3.985 7 H 0.087 0.913 8 C -0.175 4.175 9 C 0.053 3.947 10 N -0.332 5.332 11 C -0.357 4.357 12 H 0.097 0.903 13 C -0.204 4.204 14 N -0.570 5.570 15 Si 0.743 3.257 16 H -0.205 1.205 17 H -0.217 1.217 18 H -0.217 1.217 19 C -0.010 4.010 20 H 0.136 0.864 21 H 0.135 0.865 22 H 0.073 0.927 23 H 0.076 0.924 24 H 0.082 0.918 25 H 0.087 0.913 26 H 0.067 0.933 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.047 0.953 30 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -8.155 9.483 -1.617 12.612 hybrid contribution 0.547 -1.084 0.437 1.290 sum -7.608 8.400 -1.180 11.395 Atomic orbital electron populations 1.81243 1.12975 1.08136 1.09170 1.28969 0.95033 0.93424 0.93001 1.19073 0.81066 0.99546 1.06828 1.22223 0.83251 0.94561 1.01192 1.87821 1.17259 1.30832 1.93576 1.23470 0.94727 0.82609 0.97697 0.91350 1.22982 0.93744 1.01104 0.99664 1.21177 0.94346 0.89443 0.89777 1.44358 1.31308 1.23436 1.34120 1.19114 1.10819 0.96714 1.09068 0.90326 1.24809 0.97974 0.99203 0.98415 1.69962 1.20301 1.38520 1.28183 0.86032 0.77831 0.82893 0.78932 1.20495 1.21737 1.21688 1.21949 0.92157 0.92424 0.94478 0.86377 0.86500 0.92709 0.92439 0.91766 0.91336 0.93338 0.93493 0.93742 0.95329 0.94456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -5.75 18.54 42.15 0.78 -4.97 16 2 C 0.21 2.15 15.43 -20.76 -0.32 1.83 16 3 C -0.03 -0.19 6.07 -29.52 -0.18 -0.37 16 4 C 0.07 0.70 5.77 37.16 0.21 0.91 16 5 O -0.38 -5.32 10.16 -35.23 -0.36 -5.67 16 6 C 0.07 1.25 3.49 -24.58 -0.09 1.16 16 7 H 0.07 1.13 7.90 -51.93 -0.41 0.72 16 8 C -0.14 -2.50 6.69 -24.90 -0.17 -2.67 16 9 C 0.18 4.23 5.37 -3.07 -0.02 4.22 16 10 N -0.60 -15.36 3.39 -170.07 -0.58 -15.94 16 11 C -0.23 -6.35 10.28 -15.06 -0.15 -6.51 16 12 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 13 C -0.01 -0.22 5.49 -17.43 -0.10 -0.31 16 14 N -0.92 -26.82 10.31 55.49 0.57 -26.24 16 15 Si 0.91 21.90 29.55 -169.99 -5.02 16.88 16 16 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 17 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 18 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 19 C 0.12 2.39 6.97 -2.53 -0.02 2.37 16 20 H 0.12 0.73 8.14 -51.93 -0.42 0.31 16 21 H 0.12 0.67 8.14 -51.93 -0.42 0.25 16 22 H 0.05 0.54 8.11 -51.93 -0.42 0.12 16 23 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 25 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 26 H 0.05 1.27 7.38 -51.93 -0.38 0.88 16 27 H 0.05 1.24 7.50 -51.93 -0.39 0.85 16 28 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 29 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 262.86 15.07 3.96 3.96 Total: -1.00 -31.42 262.86 -5.58 -36.99 By element: Atomic # 1 Polarization: -1.53 SS G_CDS: -4.11 Total: -5.64 kcal Atomic # 6 Polarization: 1.45 SS G_CDS: -0.82 Total: 0.63 kcal Atomic # 7 Polarization: -47.93 SS G_CDS: 0.78 Total: -47.15 kcal Atomic # 8 Polarization: -5.32 SS G_CDS: -0.36 Total: -5.67 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -31.42 -5.58 -36.99 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205609713.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.523 kcal (2) G-P(sol) polarization free energy of solvation -31.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.993 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds