Wall clock time and date at job start Sun Mar 29 2020 21:34:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.52995 * 109.47180 * 9.28117 * 3 2 1 5 5 O 1.42901 * 109.47345 * 179.97438 * 4 3 2 6 6 C 1.42898 * 114.00403 * 180.02562 * 5 4 3 7 7 H 1.08998 * 110.88442 * 32.42780 * 6 5 4 8 8 C 1.55158 * 111.03971 * 156.33359 * 6 5 4 9 9 C 1.54316 * 102.94139 * 153.59087 * 8 6 5 10 10 N 1.47020 * 107.27568 * 337.80546 * 9 8 6 11 11 C 1.36938 * 125.65236 * 178.97773 * 10 9 8 12 12 H 1.07994 * 120.00035 * 179.97438 * 11 10 9 13 13 C 1.38811 * 119.99774 * 359.95644 * 11 10 9 14 14 N 1.31617 * 120.00082 * 0.02562 * 13 11 10 15 15 Si 1.86807 * 119.99981 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.46763 * 0.02562 * 15 13 11 17 17 H 1.48496 * 109.46850 * 120.00328 * 15 13 11 18 18 H 1.48497 * 109.47123 * 240.00366 * 15 13 11 19 19 C 1.47422 * 108.70191 * 358.94070 * 10 9 8 20 20 H 1.09007 * 109.47110 * 249.28508 * 3 2 1 21 21 H 1.08994 * 109.46970 * 129.28349 * 3 2 1 22 22 H 1.09000 * 109.47107 * 59.99960 * 4 3 2 23 23 H 1.08999 * 109.47526 * 300.00453 * 4 3 2 24 24 H 1.09003 * 110.71801 * 271.95608 * 8 6 5 25 25 H 1.08999 * 110.71744 * 35.04646 * 8 6 5 26 26 H 1.09000 * 109.88340 * 97.22892 * 9 8 6 27 27 H 1.09005 * 109.88355 * 218.23652 * 9 8 6 28 28 H 0.97006 * 120.00279 * 180.02562 * 14 13 11 29 29 H 1.08998 * 110.36873 * 265.28987 * 19 10 9 30 30 H 1.09005 * 110.36491 * 142.96394 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1187 -1.4227 -0.2326 5 8 4.5477 -1.4220 -0.2332 6 6 5.1295 -2.7099 -0.4444 7 1 4.5024 -3.3174 -1.0969 8 6 6.5675 -2.5850 -1.0137 9 6 7.2407 -3.8908 -0.5415 10 7 6.4810 -4.3789 0.6187 11 6 6.7440 -5.5254 1.3199 12 1 6.1243 -5.7977 2.1615 13 6 7.8067 -6.3376 0.9489 14 7 8.5620 -6.0056 -0.0766 15 14 8.1659 -7.9012 1.9059 16 1 7.1783 -8.0464 3.0054 17 1 8.0693 -9.0712 0.9966 18 1 9.5351 -7.8291 2.4761 19 6 5.3898 -3.4293 0.9027 20 1 2.9712 0.3643 0.9613 21 1 2.9710 0.6515 -0.7954 22 1 2.7555 -1.7864 -1.1938 23 1 2.7556 -2.0736 0.5627 24 1 6.5480 -2.5329 -2.1023 25 1 7.0731 -1.7143 -0.5963 26 1 7.2140 -4.6317 -1.3405 27 1 8.2735 -3.6926 -0.2544 28 1 9.3044 -6.5734 -0.3362 29 1 5.6995 -2.7116 1.6623 30 1 4.4965 -3.9637 1.2262 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205609713.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:34:35 Heat of formation + Delta-G solvation = -17.070637 kcal Electronic energy + Delta-G solvation = -13420.950761 eV Core-core repulsion = 11023.375981 eV Total energy + Delta-G solvation = -2397.574780 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.89092 -38.09369 -37.25566 -34.29497 -32.59028 -30.92149 -28.75350 -26.40222 -24.61978 -22.01059 -21.80978 -19.01898 -18.46892 -17.62093 -16.71792 -16.68311 -16.02502 -15.64284 -15.04742 -14.74715 -14.27463 -13.87794 -13.82456 -13.61402 -13.37693 -12.95835 -12.81039 -12.56803 -12.26763 -11.96847 -11.92551 -11.89857 -11.69077 -11.36430 -10.70311 -10.40749 -8.89292 -7.84258 -5.20423 1.48254 1.48881 1.59233 1.64625 1.81435 2.45484 2.58133 3.33647 3.38447 3.81772 3.88036 4.06484 4.19905 4.23120 4.29117 4.54009 4.69957 4.80999 4.95902 4.99639 5.03128 5.11892 5.18138 5.46829 5.68287 5.77553 6.18220 6.33988 6.58119 7.11220 7.77823 8.41353 9.26210 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.061070 B = 0.005913 C = 0.005502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 458.378878 B = 4734.135227 C = 5087.953926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C 0.243 3.757 3 C -0.013 4.013 4 C 0.058 3.942 5 O -0.374 6.374 6 C 0.094 3.906 7 H 0.078 0.922 8 C -0.123 4.123 9 C 0.183 3.817 10 N -0.628 5.628 11 C -0.244 4.244 12 H 0.083 0.917 13 C -0.064 4.064 14 N -0.951 5.951 15 Si 0.979 3.021 16 H -0.266 1.266 17 H -0.291 1.291 18 H -0.292 1.292 19 C 0.110 3.890 20 H 0.139 0.861 21 H 0.145 0.855 22 H 0.065 0.935 23 H 0.054 0.946 24 H 0.089 0.911 25 H 0.077 0.923 26 H 0.017 0.983 27 H 0.010 0.990 28 H 0.247 0.753 29 H 0.029 0.971 30 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.531 10.430 -1.505 12.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.174 5.174 2 C -0.074 4.074 3 C -0.053 4.053 4 C -0.020 4.020 5 O -0.292 6.292 6 C 0.035 3.965 7 H 0.096 0.904 8 C -0.161 4.161 9 C 0.058 3.942 10 N -0.355 5.355 11 C -0.373 4.373 12 H 0.100 0.900 13 C -0.257 4.257 14 N -0.600 5.600 15 Si 0.807 3.193 16 H -0.190 1.190 17 H -0.218 1.218 18 H -0.219 1.219 19 C -0.015 4.015 20 H 0.156 0.844 21 H 0.162 0.838 22 H 0.083 0.917 23 H 0.073 0.927 24 H 0.108 0.892 25 H 0.096 0.904 26 H 0.035 0.965 27 H 0.028 0.972 28 H 0.057 0.943 29 H 0.047 0.953 30 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -9.006 10.457 -1.470 13.878 hybrid contribution 0.780 -1.329 0.425 1.599 sum -8.226 9.127 -1.045 12.332 Atomic orbital electron populations 1.81283 1.14838 1.09953 1.11328 1.29316 0.95240 0.91694 0.91153 1.19145 0.78996 0.98095 1.09020 1.22442 0.81173 0.96601 1.01814 1.87798 1.19392 1.28553 1.93439 1.23058 0.94412 0.83719 0.95316 0.90394 1.22795 0.94143 0.97976 1.01228 1.20945 0.93292 0.91431 0.88569 1.44672 1.32880 1.23695 1.34294 1.19506 1.10785 0.97696 1.09325 0.89957 1.25646 0.98107 1.02395 0.99594 1.70177 1.20653 1.39492 1.29652 0.85008 0.77516 0.78943 0.77843 1.19042 1.21825 1.21895 1.22145 0.90858 0.91890 0.96637 0.84350 0.83777 0.91713 0.92716 0.89209 0.90418 0.96493 0.97186 0.94318 0.95328 0.93811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -12.36 18.54 20.01 0.37 -11.99 16 2 C 0.24 4.26 15.43 89.44 1.38 5.64 16 3 C -0.01 -0.14 6.07 28.79 0.17 0.03 16 4 C 0.06 1.00 5.77 71.98 0.42 1.42 16 5 O -0.37 -9.17 10.16 -148.98 -1.51 -10.68 16 6 C 0.09 2.96 3.49 31.99 0.11 3.07 16 7 H 0.08 2.35 7.90 -2.39 -0.02 2.33 16 8 C -0.12 -4.29 6.69 31.78 0.21 -4.08 16 9 C 0.18 8.86 5.37 86.73 0.47 9.32 16 10 N -0.63 -32.03 3.39 -691.99 -2.35 -34.38 16 11 C -0.24 -13.65 10.28 84.03 0.86 -12.78 16 12 H 0.08 4.40 7.83 -2.91 -0.02 4.37 16 13 C -0.06 -3.65 5.49 84.86 0.47 -3.18 16 14 N -0.95 -56.78 10.31 21.65 0.22 -56.56 16 15 Si 0.98 45.40 29.55 68.60 2.03 47.43 16 16 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 17 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 18 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 19 C 0.11 4.37 6.97 86.86 0.61 4.97 16 20 H 0.14 1.09 8.14 -2.38 -0.02 1.07 16 21 H 0.14 0.93 8.14 -2.39 -0.02 0.91 16 22 H 0.06 1.04 8.11 -2.39 -0.02 1.02 16 23 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 24 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 25 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 26 H 0.02 0.91 7.38 -2.39 -0.02 0.89 16 27 H 0.01 0.54 7.50 -2.38 -0.02 0.53 16 28 H 0.25 14.32 8.31 -92.70 -0.77 13.55 16 29 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.04 1.66 8.14 -2.38 -0.02 1.64 16 Total: -1.00 -69.17 262.86 4.57 -64.60 By element: Atomic # 1 Polarization: -3.96 SS G_CDS: 1.12 Total: -2.84 kcal Atomic # 6 Polarization: -0.28 SS G_CDS: 4.70 Total: 4.42 kcal Atomic # 7 Polarization: -101.17 SS G_CDS: -1.75 Total: -102.93 kcal Atomic # 8 Polarization: -9.17 SS G_CDS: -1.51 Total: -10.68 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.43 kcal Total: -69.17 4.57 -64.60 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205609713.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.526 kcal (2) G-P(sol) polarization free energy of solvation -69.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds