Wall clock time and date at job start Sun Mar 29 2020 21:45:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 O 1.42899 * 109.46876 * 179.72213 * 9 7 2 11 11 C 1.42901 * 113.99607 * 179.97438 * 10 9 7 12 12 H 1.09000 * 109.47518 * 330.00004 * 11 10 9 13 13 C 1.53000 * 109.47162 * 89.99863 * 11 10 9 14 14 C 1.53002 * 109.47432 * 119.99746 * 13 11 10 15 15 C 1.52999 * 109.47068 * 59.99658 * 14 13 11 16 16 C 1.52998 * 109.47420 * 300.00800 * 15 14 13 17 17 C 1.52996 * 109.46863 * 209.99456 * 11 10 9 18 18 C 1.52994 * 109.47738 * 300.00248 * 17 11 10 19 19 C 1.53000 * 109.46924 * 299.99983 * 18 17 11 20 20 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 21 21 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 22 22 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 23 23 H 1.09002 * 109.47399 * 239.99797 * 13 11 10 24 24 H 1.09005 * 109.47098 * 0.02562 * 13 11 10 25 25 H 1.08996 * 109.47782 * 180.02562 * 14 13 11 26 26 H 1.09001 * 109.47366 * 180.02562 * 15 14 13 27 27 H 1.09001 * 109.47070 * 60.00232 * 15 14 13 28 28 H 1.09009 * 109.46905 * 239.99974 * 16 15 14 29 29 H 1.08996 * 109.47837 * 119.99957 * 16 15 14 30 30 H 1.09003 * 109.47362 * 60.00459 * 17 11 10 31 31 H 1.09002 * 109.47342 * 59.99853 * 18 17 11 32 32 H 1.08998 * 109.47626 * 180.02562 * 18 17 11 33 33 H 1.09002 * 109.47497 * 239.99615 * 19 18 17 34 34 H 1.09005 * 109.47098 * 120.00109 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 8 2.1795 -3.5854 -0.0101 11 6 1.5649 -4.8754 -0.0153 12 1 0.6052 -4.8228 0.4989 13 6 1.3451 -5.3298 -1.4597 14 6 2.1072 -6.6335 -1.7058 15 6 1.5958 -7.7118 -0.7485 16 6 1.8154 -7.2574 0.6958 17 6 2.4735 -5.8761 0.7014 18 6 3.8204 -5.9500 -0.0204 19 6 3.6007 -6.4044 -1.4648 20 1 -0.4850 0.8401 -0.0004 21 1 0.6242 -2.5609 0.8844 22 1 0.6244 -2.5529 -0.8956 23 1 0.2811 -5.4930 -1.6314 24 1 1.7100 -4.5618 -2.1417 25 1 1.9511 -6.9570 -2.7349 26 1 2.1390 -8.6404 -0.9235 27 1 0.5318 -7.8750 -0.9201 28 1 2.4628 -7.9703 1.2066 29 1 0.8559 -7.2048 1.2102 30 1 2.6301 -5.5525 1.7304 31 1 4.2893 -4.9660 -0.0165 32 1 4.4676 -6.6633 0.4899 33 1 4.1437 -7.3332 -1.6402 34 1 3.9652 -5.6362 -2.1468 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205610463.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:02 Heat of formation + Delta-G solvation = -79.142469 kcal Electronic energy + Delta-G solvation = -14443.352698 eV Core-core repulsion = 12146.626625 eV Total energy + Delta-G solvation = -2296.726073 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.136 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.07325 -36.00302 -32.67093 -31.07086 -30.57747 -29.35618 -26.86645 -22.66465 -22.26687 -21.66561 -21.40576 -16.79387 -16.21313 -16.03877 -15.87297 -15.40773 -14.52311 -13.61727 -13.54003 -12.94813 -12.30491 -11.88298 -11.84878 -11.74863 -11.72865 -11.67127 -11.45390 -11.00413 -10.83846 -10.81176 -10.31196 -10.11766 -9.73646 -9.65193 -9.33804 -9.04097 -8.72560 -8.07579 -6.08420 -4.09974 3.33316 3.35896 3.39847 4.36283 4.72211 4.85522 4.93115 5.18671 5.27752 5.50422 5.51961 5.61339 5.64304 5.65756 5.74119 5.82324 5.85617 5.94141 6.13384 6.19384 6.27350 6.33128 6.51772 6.58946 6.62773 6.76857 6.79804 6.82845 7.17864 7.48708 7.82587 8.20290 8.66050 9.04638 9.54892 11.03053 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.057696 B = 0.007239 C = 0.007042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 485.186589 B = 3867.274012 C = 3975.112373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.056 3.944 3 Si 0.907 3.093 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.514 4.514 8 H 0.065 0.935 9 C 0.196 3.804 10 O -0.387 6.387 11 C 0.096 3.904 12 H 0.047 0.953 13 C -0.136 4.136 14 C -0.083 4.083 15 C -0.113 4.113 16 C -0.111 4.111 17 C -0.082 4.082 18 C -0.107 4.107 19 C -0.109 4.109 20 H 0.264 0.736 21 H 0.003 0.997 22 H 0.004 0.996 23 H 0.056 0.944 24 H 0.075 0.925 25 H 0.064 0.936 26 H 0.057 0.943 27 H 0.058 0.942 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.051 0.949 33 H 0.053 0.947 34 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.397 -13.690 -1.183 14.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.734 3.266 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.553 4.553 8 H 0.083 0.917 9 C 0.121 3.879 10 O -0.307 6.307 11 C 0.037 3.963 12 H 0.066 0.934 13 C -0.174 4.174 14 C -0.102 4.102 15 C -0.150 4.150 16 C -0.149 4.149 17 C -0.101 4.101 18 C -0.144 4.144 19 C -0.147 4.147 20 H 0.074 0.926 21 H 0.021 0.979 22 H 0.022 0.978 23 H 0.075 0.925 24 H 0.093 0.907 25 H 0.082 0.918 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.090 0.910 31 H 0.092 0.908 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.436 -13.529 -1.183 14.009 hybrid contribution -0.063 0.911 -0.031 0.914 sum 3.373 -12.618 -1.214 13.117 Atomic orbital electron populations 1.69959 1.06095 1.27186 1.50599 1.24948 0.94961 0.99385 0.95207 0.86416 0.79332 0.82018 0.78823 1.20044 1.21165 1.20026 1.21044 0.93992 0.89484 1.50749 0.91667 1.20194 0.88791 0.83713 0.95165 1.87891 1.35333 1.12686 1.94739 1.21780 0.95005 0.85551 0.93938 0.93446 1.22174 0.99334 0.97113 0.98764 1.21007 0.95521 0.95320 0.98313 1.21552 1.00535 0.97770 0.95171 1.21515 1.00431 0.96344 0.96614 1.21067 0.95627 0.93898 0.99515 1.21394 0.96391 1.01675 0.94945 1.21494 0.95420 1.00305 0.97483 0.92649 0.97947 0.97835 0.92476 0.90662 0.91802 0.92426 0.92313 0.92048 0.92189 0.91028 0.90777 0.93000 0.92857 0.91965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.23 13.29 55.43 0.74 -26.49 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.91 22.08 29.54 -169.99 -5.02 17.06 16 4 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.51 -15.34 9.43 -34.44 -0.32 -15.67 16 8 H 0.07 1.93 7.81 -52.49 -0.41 1.52 16 9 C 0.20 5.45 5.50 36.01 0.20 5.65 16 10 O -0.39 -9.43 9.15 -35.23 -0.32 -9.75 16 11 C 0.10 1.86 2.55 -26.73 -0.07 1.79 16 12 H 0.05 0.94 7.79 -51.93 -0.40 0.53 16 13 C -0.14 -2.34 5.49 -26.73 -0.15 -2.49 16 14 C -0.08 -1.16 3.20 -90.62 -0.29 -1.45 16 15 C -0.11 -1.38 5.71 -26.73 -0.15 -1.53 16 16 C -0.11 -1.44 5.71 -26.73 -0.15 -1.59 16 17 C -0.08 -1.32 2.93 -90.62 -0.27 -1.59 16 18 C -0.11 -1.62 5.56 -26.73 -0.15 -1.77 16 19 C -0.11 -1.53 5.71 -26.73 -0.15 -1.69 16 20 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 21 H 0.00 0.08 8.08 -51.93 -0.42 -0.34 16 22 H 0.00 0.11 8.14 -51.93 -0.42 -0.31 16 23 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 24 H 0.07 1.44 7.90 -51.93 -0.41 1.03 16 25 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.06 0.70 8.14 -51.92 -0.42 0.28 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.07 1.30 7.68 -51.93 -0.40 0.90 16 32 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 267.68 15.07 4.03 4.03 Total: -1.00 -30.52 267.68 -8.00 -38.52 By element: Atomic # 1 Polarization: 1.26 SS G_CDS: -5.83 Total: -4.57 kcal Atomic # 6 Polarization: -17.20 SS G_CDS: -1.60 Total: -18.80 kcal Atomic # 7 Polarization: -27.23 SS G_CDS: 0.74 Total: -26.49 kcal Atomic # 8 Polarization: -9.43 SS G_CDS: -0.32 Total: -9.75 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -30.52 -8.00 -38.52 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205610463.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.623 kcal (2) G-P(sol) polarization free energy of solvation -30.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds