Wall clock time and date at job start Sun Mar 29 2020 21:45:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 O 1.42899 * 109.46876 * 179.72213 * 9 7 2 11 11 C 1.42901 * 113.99607 * 179.97438 * 10 9 7 12 12 H 1.09000 * 109.47518 * 330.00004 * 11 10 9 13 13 C 1.53000 * 109.47162 * 89.99863 * 11 10 9 14 14 C 1.53002 * 109.47432 * 119.99746 * 13 11 10 15 15 C 1.52999 * 109.47068 * 59.99658 * 14 13 11 16 16 C 1.52998 * 109.47420 * 300.00800 * 15 14 13 17 17 C 1.52996 * 109.46863 * 209.99456 * 11 10 9 18 18 C 1.52994 * 109.47738 * 300.00248 * 17 11 10 19 19 C 1.53000 * 109.46924 * 299.99983 * 18 17 11 20 20 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 21 21 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 22 22 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 23 23 H 1.09002 * 109.47399 * 239.99797 * 13 11 10 24 24 H 1.09005 * 109.47098 * 0.02562 * 13 11 10 25 25 H 1.08996 * 109.47782 * 180.02562 * 14 13 11 26 26 H 1.09001 * 109.47366 * 180.02562 * 15 14 13 27 27 H 1.09001 * 109.47070 * 60.00232 * 15 14 13 28 28 H 1.09009 * 109.46905 * 239.99974 * 16 15 14 29 29 H 1.08996 * 109.47837 * 119.99957 * 16 15 14 30 30 H 1.09003 * 109.47362 * 60.00459 * 17 11 10 31 31 H 1.09002 * 109.47342 * 59.99853 * 18 17 11 32 32 H 1.08998 * 109.47626 * 180.02562 * 18 17 11 33 33 H 1.09002 * 109.47497 * 239.99615 * 19 18 17 34 34 H 1.09005 * 109.47098 * 120.00109 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 8 2.1795 -3.5854 -0.0101 11 6 1.5649 -4.8754 -0.0153 12 1 0.6052 -4.8228 0.4989 13 6 1.3451 -5.3298 -1.4597 14 6 2.1072 -6.6335 -1.7058 15 6 1.5958 -7.7118 -0.7485 16 6 1.8154 -7.2574 0.6958 17 6 2.4735 -5.8761 0.7014 18 6 3.8204 -5.9500 -0.0204 19 6 3.6007 -6.4044 -1.4648 20 1 -0.4850 0.8401 -0.0004 21 1 0.6242 -2.5609 0.8844 22 1 0.6244 -2.5529 -0.8956 23 1 0.2811 -5.4930 -1.6314 24 1 1.7100 -4.5618 -2.1417 25 1 1.9511 -6.9570 -2.7349 26 1 2.1390 -8.6404 -0.9235 27 1 0.5318 -7.8750 -0.9201 28 1 2.4628 -7.9703 1.2066 29 1 0.8559 -7.2048 1.2102 30 1 2.6301 -5.5525 1.7304 31 1 4.2893 -4.9660 -0.0165 32 1 4.4676 -6.6633 0.4899 33 1 4.1437 -7.3332 -1.6402 34 1 3.9652 -5.6362 -2.1468 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205610463.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:02 Heat of formation + Delta-G solvation = -97.092427 kcal Electronic energy + Delta-G solvation = -14444.131067 eV Core-core repulsion = 12146.626625 eV Total energy + Delta-G solvation = -2297.504442 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.136 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.37384 -37.85174 -34.90874 -32.29972 -31.66675 -30.93765 -28.98657 -24.72773 -23.41759 -23.12625 -22.72324 -18.80914 -17.75007 -17.49278 -17.38828 -16.77370 -16.40000 -15.44381 -15.06647 -14.74064 -13.68666 -13.57992 -13.24002 -12.97185 -12.94183 -12.90992 -12.88461 -12.85605 -12.67059 -12.48853 -12.05539 -11.60898 -11.29863 -11.17176 -10.79533 -10.72446 -10.63128 -10.06527 -8.34528 -6.47664 1.37165 1.42375 1.50878 2.32454 2.98676 3.14211 3.67789 3.72645 3.86995 4.22467 4.33529 4.42319 4.44868 4.46894 4.54978 4.59547 4.61953 4.72200 4.80466 4.91568 5.05220 5.10796 5.15229 5.18317 5.32677 5.43201 5.48109 5.49249 5.51814 5.56413 5.60212 5.94998 6.54285 6.83704 7.24958 8.77721 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.057696 B = 0.007239 C = 0.007042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 485.186589 B = 3867.274012 C = 3975.112373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.006 3.994 3 Si 0.984 3.016 4 H -0.265 1.265 5 H -0.273 1.273 6 H -0.265 1.265 7 C -0.551 4.551 8 H 0.061 0.939 9 C 0.214 3.786 10 O -0.400 6.400 11 C 0.081 3.919 12 H 0.034 0.966 13 C -0.135 4.135 14 C -0.080 4.080 15 C -0.109 4.109 16 C -0.107 4.107 17 C -0.082 4.082 18 C -0.106 4.106 19 C -0.109 4.109 20 H 0.271 0.729 21 H -0.021 1.021 22 H -0.018 1.018 23 H 0.062 0.938 24 H 0.045 0.955 25 H 0.083 0.917 26 H 0.087 0.913 27 H 0.066 0.934 28 H 0.087 0.913 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.039 0.961 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.361 -14.996 -1.379 15.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.192 4.192 3 Si 0.806 3.194 4 H -0.190 1.190 5 H -0.198 1.198 6 H -0.189 1.189 7 C -0.589 4.589 8 H 0.079 0.921 9 C 0.138 3.862 10 O -0.320 6.320 11 C 0.023 3.977 12 H 0.052 0.948 13 C -0.172 4.172 14 C -0.098 4.098 15 C -0.146 4.146 16 C -0.144 4.144 17 C -0.101 4.101 18 C -0.144 4.144 19 C -0.146 4.146 20 H 0.080 0.920 21 H -0.003 1.003 22 H 0.000 1.000 23 H 0.081 0.919 24 H 0.064 0.936 25 H 0.101 0.899 26 H 0.105 0.895 27 H 0.085 0.915 28 H 0.106 0.894 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.058 0.942 32 H 0.099 0.901 33 H 0.105 0.895 34 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 4.398 -14.863 -1.379 15.561 hybrid contribution -0.408 1.283 0.040 1.347 sum 3.990 -13.579 -1.339 14.217 Atomic orbital electron populations 1.70073 1.07819 1.28752 1.50359 1.25997 0.95986 1.03463 0.93801 0.85228 0.78125 0.76607 0.79419 1.18991 1.19764 1.18933 1.21379 0.94052 0.90944 1.52479 0.92104 1.19765 0.88590 0.84905 0.92895 1.87855 1.35208 1.14077 1.94889 1.22216 0.95305 0.84132 0.96050 0.94767 1.22129 1.00330 0.98504 0.96286 1.21033 0.94873 0.93748 1.00156 1.21566 1.01485 0.97954 0.93603 1.21524 1.00721 0.94307 0.97846 1.21111 0.95805 0.94868 0.98322 1.21395 0.95967 1.00708 0.96332 1.21515 0.95846 1.01302 0.95963 0.91988 1.00300 1.00034 0.91897 0.93581 0.89853 0.89478 0.91531 0.89395 0.92071 0.92227 0.94231 0.90086 0.89521 0.93678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.44 13.29 21.45 0.28 -57.15 16 2 C 0.01 0.36 5.46 84.66 0.46 0.82 16 3 Si 0.98 45.37 29.54 68.60 2.03 47.40 16 4 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 5 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 6 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 7 C -0.55 -34.05 9.43 25.60 0.24 -33.81 16 8 H 0.06 3.71 7.81 -2.91 -0.02 3.69 16 9 C 0.21 12.60 5.50 71.24 0.39 13.00 16 10 O -0.40 -20.64 9.15 -148.98 -1.36 -22.01 16 11 C 0.08 3.25 2.55 30.59 0.08 3.33 16 12 H 0.03 1.43 7.79 -2.39 -0.02 1.41 16 13 C -0.13 -4.71 5.49 30.59 0.17 -4.54 16 14 C -0.08 -2.05 3.20 -10.79 -0.03 -2.09 16 15 C -0.11 -2.25 5.71 30.59 0.17 -2.08 16 16 C -0.11 -2.46 5.71 30.60 0.17 -2.28 16 17 C -0.08 -2.61 2.93 -10.80 -0.03 -2.64 16 18 C -0.11 -3.13 5.56 30.59 0.17 -2.96 16 19 C -0.11 -2.83 5.71 30.60 0.17 -2.65 16 20 H 0.27 15.47 8.31 -92.70 -0.77 14.70 16 21 H -0.02 -1.28 8.08 -2.38 -0.02 -1.30 16 22 H -0.02 -1.12 8.14 -2.39 -0.02 -1.14 16 23 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 24 H 0.05 1.86 7.90 -2.38 -0.02 1.84 16 25 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 26 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.07 1.30 8.14 -2.39 -0.02 1.29 16 28 H 0.09 1.62 8.14 -2.38 -0.02 1.60 16 29 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.04 1.41 7.68 -2.39 -0.02 1.39 16 32 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.04 1.31 8.14 -2.38 -0.02 1.29 16 Total: -1.00 -67.97 267.68 3.96 -64.02 By element: Atomic # 1 Polarization: 2.62 SS G_CDS: 1.04 Total: 3.66 kcal Atomic # 6 Polarization: -37.88 SS G_CDS: 1.97 Total: -35.91 kcal Atomic # 7 Polarization: -57.44 SS G_CDS: 0.28 Total: -57.15 kcal Atomic # 8 Polarization: -20.64 SS G_CDS: -1.36 Total: -22.01 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal Total: -67.97 3.96 -64.02 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205610463.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.076 kcal (2) G-P(sol) polarization free energy of solvation -67.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds