Wall clock time and date at job start Sun Mar 29 2020 21:45:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99708 * 2 1 4 4 H 1.48505 * 109.47043 * 270.00314 * 3 2 1 5 5 H 1.48498 * 109.47241 * 30.00111 * 3 2 1 6 6 H 1.48492 * 109.47307 * 150.00402 * 3 2 1 7 7 C 1.37870 * 120.00579 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00168 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99653 * 359.97438 * 7 2 1 10 10 O 1.42899 * 109.47022 * 180.02562 * 9 7 2 11 11 C 1.42904 * 114.00102 * 179.97438 * 10 9 7 12 12 H 1.08998 * 109.46808 * 30.00276 * 11 10 9 13 13 C 1.52997 * 109.47463 * 270.00458 * 11 10 9 14 14 C 1.53002 * 109.46817 * 239.99932 * 13 11 10 15 15 C 1.53000 * 109.47233 * 60.00194 * 14 13 11 16 16 C 1.52997 * 109.47060 * 299.99657 * 15 14 13 17 17 C 1.52998 * 109.46830 * 149.99968 * 11 10 9 18 18 C 1.53002 * 109.46888 * 180.02562 * 17 11 10 19 19 C 1.52996 * 109.47346 * 299.99737 * 14 13 11 20 20 H 0.97000 * 120.00683 * 359.97438 * 1 2 3 21 21 H 1.09001 * 109.46854 * 60.00377 * 9 7 2 22 22 H 1.08997 * 109.47068 * 299.99903 * 9 7 2 23 23 H 1.08993 * 109.47194 * 119.99413 * 13 11 10 24 24 H 1.09002 * 109.46695 * 359.97438 * 13 11 10 25 25 H 1.09004 * 109.46733 * 179.97438 * 14 13 11 26 26 H 1.09002 * 109.47398 * 59.99826 * 15 14 13 27 27 H 1.09001 * 109.47194 * 180.02562 * 15 14 13 28 28 H 1.09000 * 109.47508 * 119.99984 * 16 15 14 29 29 H 1.08998 * 109.47420 * 240.00733 * 16 15 14 30 30 H 1.09000 * 109.47329 * 300.00460 * 17 11 10 31 31 H 1.08998 * 109.47006 * 60.00150 * 18 17 11 32 32 H 1.08999 * 109.47160 * 180.02562 * 18 17 11 33 33 H 1.08992 * 109.47554 * 180.02562 * 19 14 13 34 34 H 1.09004 * 109.47108 * 300.00289 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.6999 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1938 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 8 2.1798 -3.5852 -0.0005 11 6 1.5653 -4.8754 0.0000 12 1 0.6054 -4.8208 -0.5135 13 6 1.3464 -5.3354 1.4427 14 6 2.1088 -6.6399 1.6832 15 6 3.6021 -6.4098 1.4424 16 6 3.8210 -5.9497 -0.0003 17 6 2.4737 -5.8731 -0.7212 18 6 1.8155 -7.2543 -0.7212 19 6 1.5969 -7.7146 0.7220 20 1 -0.4851 0.8400 0.0004 21 1 0.6242 -2.5566 -0.8903 22 1 0.6248 -2.5571 0.8897 23 1 0.2826 -5.4993 1.6143 24 1 1.7115 -4.5700 2.1275 25 1 1.9532 -6.9675 2.7112 26 1 3.9669 -5.6442 2.1272 27 1 4.1452 -7.3392 1.6133 28 1 4.2897 -4.9656 -0.0007 29 1 4.4681 -6.6606 -0.5141 30 1 2.6296 -5.5453 -1.7490 31 1 0.8558 -7.1995 -1.2350 32 1 2.4628 -7.9653 -1.2346 33 1 2.1397 -8.6440 0.8936 34 1 0.5330 -7.8786 0.8936 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205610465.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:04 Heat of formation + Delta-G solvation = -79.174511 kcal Electronic energy + Delta-G solvation = -14443.274365 eV Core-core repulsion = 12146.546903 eV Total energy + Delta-G solvation = -2296.727463 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.07165 -36.00278 -32.67292 -31.07125 -30.57579 -29.35599 -26.86801 -22.66711 -22.26798 -21.66604 -21.40565 -16.79491 -16.21380 -16.03995 -15.87334 -15.40834 -14.52047 -13.61639 -13.53886 -12.95118 -12.30542 -11.88611 -11.84877 -11.75008 -11.72936 -11.67124 -11.45567 -11.00008 -10.86541 -10.78814 -10.31065 -10.11624 -9.73520 -9.65274 -9.33766 -9.03338 -8.72901 -8.07746 -6.08591 -4.10128 3.31338 3.36269 3.41691 4.36271 4.72178 4.85555 4.93054 5.18623 5.27686 5.50457 5.51941 5.61326 5.64265 5.65691 5.74098 5.82306 5.85582 5.94134 6.13376 6.19348 6.27346 6.33120 6.51765 6.58926 6.62772 6.76853 6.79807 6.82824 7.17810 7.48593 7.82698 8.20149 8.65915 9.04834 9.54887 11.02915 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.057706 B = 0.007238 C = 0.007041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 485.104931 B = 3867.653619 C = 3975.566627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.056 3.944 3 Si 0.906 3.094 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.514 4.514 8 H 0.066 0.934 9 C 0.195 3.805 10 O -0.387 6.387 11 C 0.096 3.904 12 H 0.047 0.953 13 C -0.136 4.136 14 C -0.083 4.083 15 C -0.109 4.109 16 C -0.107 4.107 17 C -0.083 4.083 18 C -0.111 4.111 19 C -0.113 4.113 20 H 0.263 0.737 21 H 0.003 0.997 22 H 0.004 0.996 23 H 0.056 0.944 24 H 0.075 0.925 25 H 0.064 0.936 26 H 0.062 0.938 27 H 0.053 0.947 28 H 0.073 0.927 29 H 0.051 0.949 30 H 0.071 0.929 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.057 0.943 34 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.412 -13.708 1.132 14.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.734 3.266 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.196 1.196 7 C -0.552 4.552 8 H 0.084 0.916 9 C 0.121 3.879 10 O -0.307 6.307 11 C 0.037 3.963 12 H 0.065 0.935 13 C -0.174 4.174 14 C -0.102 4.102 15 C -0.147 4.147 16 C -0.144 4.144 17 C -0.101 4.101 18 C -0.149 4.149 19 C -0.150 4.150 20 H 0.073 0.927 21 H 0.021 0.979 22 H 0.022 0.978 23 H 0.075 0.925 24 H 0.093 0.907 25 H 0.082 0.918 26 H 0.080 0.920 27 H 0.071 0.929 28 H 0.092 0.908 29 H 0.070 0.930 30 H 0.090 0.910 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.456 -13.549 1.136 14.029 hybrid contribution -0.077 0.916 0.015 0.919 sum 3.379 -12.633 1.152 13.128 Atomic orbital electron populations 1.69962 1.06096 1.27081 1.50702 1.24945 0.94957 0.99394 0.95222 0.86361 0.79686 0.82377 0.78219 1.20481 1.21097 1.19648 1.21078 0.94029 0.89470 1.50598 0.91615 1.20201 0.88798 0.83731 0.95171 1.87892 1.35334 1.12684 1.94742 1.21780 0.95007 0.85549 0.93939 0.93451 1.22172 0.99335 0.97095 0.98783 1.21007 0.95520 0.95330 0.98303 1.21492 0.95421 1.00290 0.97495 1.21396 0.96386 1.01669 0.94959 1.21069 0.95628 0.93914 0.99499 1.21522 1.00430 0.96333 0.96616 1.21559 1.00537 0.97770 0.95163 0.92706 0.97942 0.97829 0.92476 0.90659 0.91803 0.91958 0.92856 0.90779 0.93001 0.91031 0.92181 0.92046 0.92425 0.92321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.22 13.29 55.43 0.74 -26.49 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.91 22.07 29.54 -169.99 -5.02 17.05 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.51 -15.31 9.43 -34.44 -0.32 -15.64 16 8 H 0.07 1.94 7.81 -52.49 -0.41 1.53 16 9 C 0.20 5.44 5.50 36.01 0.20 5.64 16 10 O -0.39 -9.42 9.15 -35.23 -0.32 -9.75 16 11 C 0.10 1.86 2.55 -26.73 -0.07 1.79 16 12 H 0.05 0.94 7.79 -51.93 -0.40 0.53 16 13 C -0.14 -2.34 5.49 -26.73 -0.15 -2.49 16 14 C -0.08 -1.16 3.19 -90.62 -0.29 -1.45 16 15 C -0.11 -1.53 5.71 -26.73 -0.15 -1.69 16 16 C -0.11 -1.62 5.56 -26.73 -0.15 -1.77 16 17 C -0.08 -1.32 2.93 -90.62 -0.27 -1.59 16 18 C -0.11 -1.44 5.71 -26.70 -0.15 -1.59 16 19 C -0.11 -1.38 5.71 -26.71 -0.15 -1.53 16 20 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 21 H 0.00 0.08 8.09 -51.93 -0.42 -0.34 16 22 H 0.00 0.11 8.14 -51.93 -0.42 -0.31 16 23 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 24 H 0.07 1.44 7.90 -51.93 -0.41 1.03 16 25 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.07 1.30 7.68 -51.93 -0.40 0.90 16 29 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 267.68 15.07 4.03 4.03 Total: -1.00 -30.54 267.68 -8.00 -38.54 By element: Atomic # 1 Polarization: 1.23 SS G_CDS: -5.83 Total: -4.60 kcal Atomic # 6 Polarization: -17.18 SS G_CDS: -1.60 Total: -18.78 kcal Atomic # 7 Polarization: -27.22 SS G_CDS: 0.74 Total: -26.49 kcal Atomic # 8 Polarization: -9.42 SS G_CDS: -0.32 Total: -9.75 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -30.54 -8.00 -38.54 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205610465.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.636 kcal (2) G-P(sol) polarization free energy of solvation -30.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds