Wall clock time and date at job start Sun Mar 29 2020 21:45:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99708 * 2 1 4 4 H 1.48505 * 109.47043 * 270.00314 * 3 2 1 5 5 H 1.48498 * 109.47241 * 30.00111 * 3 2 1 6 6 H 1.48492 * 109.47307 * 150.00402 * 3 2 1 7 7 C 1.37870 * 120.00579 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00168 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99653 * 359.97438 * 7 2 1 10 10 O 1.42899 * 109.47022 * 180.02562 * 9 7 2 11 11 C 1.42904 * 114.00102 * 179.97438 * 10 9 7 12 12 H 1.08998 * 109.46808 * 30.00276 * 11 10 9 13 13 C 1.52997 * 109.47463 * 270.00458 * 11 10 9 14 14 C 1.53002 * 109.46817 * 239.99932 * 13 11 10 15 15 C 1.53000 * 109.47233 * 60.00194 * 14 13 11 16 16 C 1.52997 * 109.47060 * 299.99657 * 15 14 13 17 17 C 1.52998 * 109.46830 * 149.99968 * 11 10 9 18 18 C 1.53002 * 109.46888 * 180.02562 * 17 11 10 19 19 C 1.52996 * 109.47346 * 299.99737 * 14 13 11 20 20 H 0.97000 * 120.00683 * 359.97438 * 1 2 3 21 21 H 1.09001 * 109.46854 * 60.00377 * 9 7 2 22 22 H 1.08997 * 109.47068 * 299.99903 * 9 7 2 23 23 H 1.08993 * 109.47194 * 119.99413 * 13 11 10 24 24 H 1.09002 * 109.46695 * 359.97438 * 13 11 10 25 25 H 1.09004 * 109.46733 * 179.97438 * 14 13 11 26 26 H 1.09002 * 109.47398 * 59.99826 * 15 14 13 27 27 H 1.09001 * 109.47194 * 180.02562 * 15 14 13 28 28 H 1.09000 * 109.47508 * 119.99984 * 16 15 14 29 29 H 1.08998 * 109.47420 * 240.00733 * 16 15 14 30 30 H 1.09000 * 109.47329 * 300.00460 * 17 11 10 31 31 H 1.08998 * 109.47006 * 60.00150 * 18 17 11 32 32 H 1.08999 * 109.47160 * 180.02562 * 18 17 11 33 33 H 1.08992 * 109.47554 * 180.02562 * 19 14 13 34 34 H 1.09004 * 109.47108 * 300.00289 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.6999 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1938 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 8 2.1798 -3.5852 -0.0005 11 6 1.5653 -4.8754 0.0000 12 1 0.6054 -4.8208 -0.5135 13 6 1.3464 -5.3354 1.4427 14 6 2.1088 -6.6399 1.6832 15 6 3.6021 -6.4098 1.4424 16 6 3.8210 -5.9497 -0.0003 17 6 2.4737 -5.8731 -0.7212 18 6 1.8155 -7.2543 -0.7212 19 6 1.5969 -7.7146 0.7220 20 1 -0.4851 0.8400 0.0004 21 1 0.6242 -2.5566 -0.8903 22 1 0.6248 -2.5571 0.8897 23 1 0.2826 -5.4993 1.6143 24 1 1.7115 -4.5700 2.1275 25 1 1.9532 -6.9675 2.7112 26 1 3.9669 -5.6442 2.1272 27 1 4.1452 -7.3392 1.6133 28 1 4.2897 -4.9656 -0.0007 29 1 4.4681 -6.6606 -0.5141 30 1 2.6296 -5.5453 -1.7490 31 1 0.8558 -7.1995 -1.2350 32 1 2.4628 -7.9653 -1.2346 33 1 2.1397 -8.6440 0.8936 34 1 0.5330 -7.8786 0.8936 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205610465.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:03 Heat of formation + Delta-G solvation = -97.140600 kcal Electronic energy + Delta-G solvation = -14444.053433 eV Core-core repulsion = 12146.546903 eV Total energy + Delta-G solvation = -2297.506531 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.136 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.37217 -37.85123 -34.91055 -32.29986 -31.66520 -30.93712 -28.98783 -24.72994 -23.41836 -23.12695 -22.72244 -18.81171 -17.75079 -17.49342 -17.38855 -16.77436 -16.39650 -15.44346 -15.06435 -14.74627 -13.69014 -13.58073 -13.24203 -12.97003 -12.94209 -12.90919 -12.88016 -12.85004 -12.68363 -12.48868 -12.05785 -11.60415 -11.28822 -11.17599 -10.79590 -10.72664 -10.63125 -10.06552 -8.34670 -6.47766 1.37213 1.40518 1.52600 2.32424 2.98584 3.14170 3.67814 3.72640 3.86993 4.22494 4.33535 4.42331 4.44862 4.46907 4.55005 4.59456 4.61943 4.72218 4.80475 4.91573 5.05252 5.10776 5.15207 5.18343 5.32699 5.43201 5.48123 5.49259 5.51919 5.56443 5.60202 5.94936 6.54307 6.83809 7.24994 8.77776 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.057706 B = 0.007238 C = 0.007041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 485.104931 B = 3867.653619 C = 3975.566627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.006 3.994 3 Si 0.984 3.016 4 H -0.266 1.266 5 H -0.272 1.272 6 H -0.265 1.265 7 C -0.550 4.550 8 H 0.060 0.940 9 C 0.213 3.787 10 O -0.400 6.400 11 C 0.081 3.919 12 H 0.034 0.966 13 C -0.135 4.135 14 C -0.080 4.080 15 C -0.109 4.109 16 C -0.107 4.107 17 C -0.082 4.082 18 C -0.106 4.106 19 C -0.109 4.109 20 H 0.271 0.729 21 H -0.021 1.021 22 H -0.018 1.018 23 H 0.062 0.938 24 H 0.045 0.955 25 H 0.083 0.917 26 H 0.044 0.956 27 H 0.086 0.914 28 H 0.039 0.961 29 H 0.081 0.919 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.353 -15.007 1.304 15.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.193 4.193 3 Si 0.806 3.194 4 H -0.192 1.192 5 H -0.197 1.197 6 H -0.189 1.189 7 C -0.587 4.587 8 H 0.079 0.921 9 C 0.138 3.862 10 O -0.320 6.320 11 C 0.023 3.977 12 H 0.052 0.948 13 C -0.173 4.173 14 C -0.098 4.098 15 C -0.146 4.146 16 C -0.144 4.144 17 C -0.101 4.101 18 C -0.144 4.144 19 C -0.146 4.146 20 H 0.080 0.920 21 H -0.003 1.003 22 H 0.000 1.000 23 H 0.081 0.919 24 H 0.064 0.936 25 H 0.101 0.899 26 H 0.063 0.937 27 H 0.105 0.895 28 H 0.058 0.942 29 H 0.099 0.901 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.106 0.894 33 H 0.105 0.895 34 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 4.394 -14.876 1.307 15.566 hybrid contribution -0.415 1.288 -0.048 1.354 sum 3.979 -13.588 1.259 14.214 Atomic orbital electron populations 1.70073 1.07813 1.28690 1.50443 1.25992 0.95983 1.03465 0.93819 0.85173 0.78355 0.76899 0.78930 1.19154 1.19721 1.18885 1.21401 0.94041 0.90936 1.52354 0.92130 1.19771 0.88594 0.84913 0.92906 1.87856 1.35213 1.14078 1.94891 1.22216 0.95305 0.84124 0.96055 0.94769 1.22128 1.00333 0.98491 0.96299 1.21033 0.94868 0.93752 1.00155 1.21514 0.95852 1.01289 0.95970 1.21397 0.95965 1.00694 0.96351 1.21113 0.95805 0.94893 0.98298 1.21531 1.00719 0.94293 0.97851 1.21572 1.01487 0.97960 0.93589 0.91995 1.00289 1.00021 0.91893 0.93577 0.89852 0.93674 0.89519 0.94241 0.90086 0.92228 0.92061 0.89395 0.89479 0.91537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.41 13.29 21.44 0.28 -57.13 16 2 C 0.01 0.35 5.46 84.65 0.46 0.81 16 3 Si 0.98 45.39 29.54 68.60 2.03 47.41 16 4 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 5 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 6 H -0.26 -11.82 7.11 99.48 0.71 -11.12 16 7 C -0.55 -33.97 9.43 25.60 0.24 -33.73 16 8 H 0.06 3.70 7.81 -2.91 -0.02 3.68 16 9 C 0.21 12.58 5.50 71.24 0.39 12.98 16 10 O -0.40 -20.65 9.15 -148.98 -1.36 -22.01 16 11 C 0.08 3.25 2.55 30.59 0.08 3.33 16 12 H 0.03 1.43 7.79 -2.39 -0.02 1.41 16 13 C -0.13 -4.71 5.49 30.59 0.17 -4.54 16 14 C -0.08 -2.05 3.19 -10.79 -0.03 -2.09 16 15 C -0.11 -2.83 5.71 30.59 0.17 -2.65 16 16 C -0.11 -3.13 5.56 30.60 0.17 -2.96 16 17 C -0.08 -2.61 2.93 -10.79 -0.03 -2.64 16 18 C -0.11 -2.46 5.71 30.61 0.17 -2.28 16 19 C -0.11 -2.25 5.71 30.61 0.17 -2.08 16 20 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 21 H -0.02 -1.28 8.09 -2.39 -0.02 -1.30 16 22 H -0.02 -1.11 8.14 -2.39 -0.02 -1.13 16 23 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 24 H 0.05 1.86 7.90 -2.39 -0.02 1.84 16 25 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 26 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.04 1.41 7.68 -2.39 -0.02 1.39 16 29 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 Total: -1.00 -68.01 267.68 3.96 -64.05 By element: Atomic # 1 Polarization: 2.50 SS G_CDS: 1.04 Total: 3.54 kcal Atomic # 6 Polarization: -37.83 SS G_CDS: 1.97 Total: -35.86 kcal Atomic # 7 Polarization: -57.41 SS G_CDS: 0.28 Total: -57.13 kcal Atomic # 8 Polarization: -20.65 SS G_CDS: -1.36 Total: -22.01 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.41 kcal Total: -68.01 3.96 -64.05 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205610465.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.091 kcal (2) G-P(sol) polarization free energy of solvation -68.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds