Wall clock time and date at job start Sun Mar 29 2020 21:45:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00070 * 2 1 4 4 H 1.48497 * 109.47093 * 269.99513 * 3 2 1 5 5 H 1.48495 * 109.46891 * 29.99921 * 3 2 1 6 6 H 1.48504 * 109.47189 * 149.99610 * 3 2 1 7 7 C 1.37877 * 119.99923 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00248 * 0.02562 * 7 2 1 9 9 C 1.50703 * 120.00001 * 180.02562 * 7 2 1 10 10 O 1.42898 * 109.47171 * 180.02562 * 9 7 2 11 11 C 1.42902 * 114.00186 * 180.02562 * 10 9 7 12 12 H 1.09000 * 109.25801 * 29.49394 * 11 10 9 13 13 C 1.51381 * 109.26532 * 269.99706 * 11 10 9 14 14 C 1.49512 * 117.51880 * 165.92259 * 13 11 10 15 15 C 1.50512 * 113.04244 * 79.72096 * 14 13 11 16 16 C 1.31666 * 116.92393 * 275.43030 * 15 14 13 17 17 C 1.50804 * 118.08679 * 0.27504 * 16 15 14 18 18 C 1.52713 * 108.95592 * 104.85429 * 17 16 15 19 19 C 1.53846 * 109.26483 * 148.95849 * 11 10 9 20 20 H 0.97000 * 119.99684 * 0.02562 * 1 2 3 21 21 H 1.09002 * 109.47152 * 60.00329 * 9 7 2 22 22 H 1.09001 * 109.46980 * 300.00429 * 9 7 2 23 23 H 1.09000 * 107.83817 * 287.95973 * 13 11 10 24 24 H 1.09006 * 107.83309 * 43.92975 * 13 11 10 25 25 H 1.09007 * 108.76512 * 200.64173 * 14 13 11 26 26 H 1.08998 * 108.76643 * 318.79733 * 14 13 11 27 27 H 1.08001 * 121.53677 * 95.45207 * 15 14 13 28 28 H 1.07998 * 120.95636 * 180.25468 * 16 15 14 29 29 H 1.08995 * 109.55899 * 224.70298 * 17 16 15 30 30 H 1.09003 * 109.55155 * 345.01962 * 17 16 15 31 31 H 1.09003 * 109.61673 * 61.91565 * 18 17 16 32 32 H 1.08997 * 109.62128 * 182.45797 * 18 17 16 33 33 H 1.09006 * 109.80706 * 345.70835 * 19 11 10 34 34 H 1.09002 * 109.80408 * 106.58173 * 19 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0011 10 8 3.9878 -2.5413 0.0010 11 6 5.4124 -2.6542 0.0021 12 1 5.8411 -1.7900 0.5094 13 6 5.9115 -2.6932 -1.4265 14 6 7.3747 -2.4856 -1.6531 15 6 8.1928 -3.7212 -1.3897 16 6 8.5515 -3.9441 -0.1426 17 6 8.1125 -2.9571 0.9097 18 6 6.9721 -3.5699 1.7196 19 6 5.8195 -3.9351 0.7509 20 1 -0.4850 0.8401 -0.0004 21 1 3.8745 -0.6801 0.8912 22 1 3.8752 -0.6804 -0.8888 23 1 5.6426 -3.6619 -1.8478 24 1 5.3753 -1.9283 -1.9884 25 1 7.5290 -2.1764 -2.6869 26 1 7.7216 -1.6884 -0.9956 27 1 8.4729 -4.3937 -2.1870 28 1 9.1427 -4.8091 0.1192 29 1 8.9495 -2.7320 1.5705 30 1 7.7679 -2.0412 0.4296 31 1 7.3242 -4.4691 2.2251 32 1 6.6170 -2.8485 2.4555 33 1 4.9698 -4.3185 1.3158 34 1 6.1599 -4.6868 0.0387 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205610851.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:27 Heat of formation + Delta-G solvation = -41.365415 kcal Electronic energy + Delta-G solvation = -14229.278905 eV Core-core repulsion = 11934.190968 eV Total energy + Delta-G solvation = -2295.087937 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.17389 -36.36606 -32.98999 -32.73291 -31.55236 -28.04683 -26.46239 -24.96404 -22.00323 -21.41083 -20.38639 -17.97051 -16.91308 -16.26934 -15.31397 -14.85849 -14.67717 -14.30267 -13.59001 -13.52199 -13.13587 -12.57853 -12.33517 -11.95855 -11.91390 -11.25371 -11.18666 -10.92491 -10.75998 -10.60617 -10.54729 -10.31309 -9.84342 -9.70471 -9.16705 -8.91883 -8.77902 -8.41170 -6.11188 -4.09959 2.25796 3.24411 3.31434 3.32979 4.35631 4.55109 4.80403 4.97722 5.11235 5.17249 5.20843 5.33010 5.41862 5.55489 5.61868 5.67546 5.77061 5.96071 5.98985 6.06549 6.17909 6.27940 6.37511 6.42169 6.50957 6.63903 6.71372 6.73730 6.93648 7.03471 7.61519 8.07827 8.69388 9.00790 9.48425 11.01930 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.047251 B = 0.007494 C = 0.007288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 592.437305 B = 3735.669877 C = 3841.093451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.072 3.928 3 Si 0.875 3.125 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.266 1.266 7 C -0.519 4.519 8 H 0.082 0.918 9 C 0.169 3.831 10 O -0.375 6.375 11 C 0.090 3.910 12 H 0.050 0.950 13 C -0.140 4.140 14 C -0.091 4.091 15 C -0.158 4.158 16 C -0.156 4.156 17 C -0.112 4.112 18 C -0.112 4.112 19 C -0.117 4.117 20 H 0.266 0.734 21 H 0.002 0.998 22 H -0.003 1.003 23 H 0.062 0.938 24 H 0.064 0.936 25 H 0.063 0.937 26 H 0.072 0.928 27 H 0.111 0.889 28 H 0.107 0.893 29 H 0.062 0.938 30 H 0.083 0.917 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.075 0.925 34 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.291 -4.909 -0.078 17.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.130 4.130 3 Si 0.701 3.299 4 H -0.199 1.199 5 H -0.207 1.207 6 H -0.191 1.191 7 C -0.557 4.557 8 H 0.100 0.900 9 C 0.093 3.907 10 O -0.294 6.294 11 C 0.031 3.969 12 H 0.067 0.933 13 C -0.178 4.178 14 C -0.128 4.128 15 C -0.176 4.176 16 C -0.174 4.174 17 C -0.149 4.149 18 C -0.150 4.150 19 C -0.155 4.155 20 H 0.076 0.924 21 H 0.020 0.980 22 H 0.015 0.985 23 H 0.081 0.919 24 H 0.083 0.917 25 H 0.081 0.919 26 H 0.090 0.910 27 H 0.129 0.871 28 H 0.125 0.875 29 H 0.081 0.919 30 H 0.101 0.899 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.094 0.906 34 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 16.979 -4.930 -0.083 17.680 hybrid contribution 0.545 1.095 -0.151 1.232 sum 17.524 -3.834 -0.234 17.940 Atomic orbital electron populations 1.69877 1.06049 1.27055 1.50430 1.24770 0.94797 0.98727 0.94668 0.86867 0.80400 0.83831 0.78781 1.19934 1.20745 1.19081 1.20914 0.88358 0.95300 1.51091 0.89977 1.20627 0.96085 0.79803 0.94160 1.87976 1.17552 1.29312 1.94557 1.21787 0.84065 0.97314 0.93694 0.93251 1.21027 0.94618 1.03318 0.98790 1.20010 0.94606 0.96504 1.01708 1.23020 0.99114 0.98605 0.96906 1.23009 1.00162 0.99489 0.94733 1.21082 0.98077 0.98698 0.97016 1.21820 0.95059 1.00609 0.97470 1.22299 0.97848 0.97003 0.98337 0.92382 0.98021 0.98522 0.91926 0.91695 0.91859 0.91011 0.87084 0.87481 0.91900 0.89882 0.91948 0.91597 0.90649 0.91268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.86 13.96 55.43 0.77 -27.08 16 2 C 0.07 2.14 5.47 -17.82 -0.10 2.04 16 3 Si 0.87 21.58 27.47 -169.99 -4.67 16.91 16 4 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.27 -6.29 6.54 56.52 0.37 -5.92 16 7 C -0.52 -15.64 9.99 -34.44 -0.34 -15.98 16 8 H 0.08 2.70 8.06 -52.49 -0.42 2.28 16 9 C 0.17 4.35 4.50 36.01 0.16 4.51 16 10 O -0.37 -8.90 9.83 -35.23 -0.35 -9.25 16 11 C 0.09 1.63 2.16 -27.11 -0.06 1.57 16 12 H 0.05 0.88 6.19 -51.93 -0.32 0.56 16 13 C -0.14 -2.24 4.54 -29.27 -0.13 -2.37 16 14 C -0.09 -1.17 5.13 -29.70 -0.15 -1.32 16 15 C -0.16 -1.81 9.28 -36.27 -0.34 -2.14 16 16 C -0.16 -1.72 8.55 -36.13 -0.31 -2.02 16 17 C -0.11 -1.29 5.42 -27.98 -0.15 -1.44 16 18 C -0.11 -1.40 5.60 -25.86 -0.14 -1.55 16 19 C -0.12 -1.80 5.47 -25.27 -0.14 -1.93 16 20 H 0.27 7.66 8.31 -40.82 -0.34 7.32 16 21 H 0.00 0.05 7.14 -51.93 -0.37 -0.32 16 22 H 0.00 -0.07 7.02 -51.93 -0.36 -0.44 16 23 H 0.06 1.00 7.71 -51.93 -0.40 0.60 16 24 H 0.06 1.14 7.47 -51.93 -0.39 0.75 16 25 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 26 H 0.07 0.90 5.63 -51.93 -0.29 0.61 16 27 H 0.11 1.11 8.06 -52.49 -0.42 0.69 16 28 H 0.11 1.02 8.06 -52.49 -0.42 0.60 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.08 1.04 3.56 -51.93 -0.18 0.85 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.07 1.25 7.96 -51.93 -0.41 0.83 16 34 H 0.07 1.00 6.28 -51.93 -0.33 0.67 16 LS Contribution 262.12 15.07 3.95 3.95 Total: -1.00 -31.21 262.12 -7.18 -38.39 By element: Atomic # 1 Polarization: 2.91 SS G_CDS: -5.19 Total: -2.28 kcal Atomic # 6 Polarization: -18.94 SS G_CDS: -1.70 Total: -20.64 kcal Atomic # 7 Polarization: -27.86 SS G_CDS: 0.77 Total: -27.08 kcal Atomic # 8 Polarization: -8.90 SS G_CDS: -0.35 Total: -9.25 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.67 Total: 16.91 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -31.21 -7.18 -38.39 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205610851.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.974 kcal (2) G-P(sol) polarization free energy of solvation -31.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds