Wall clock time and date at job start Sun Mar 29 2020 21:45:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00070 * 2 1 4 4 H 1.48497 * 109.47093 * 269.99513 * 3 2 1 5 5 H 1.48495 * 109.46891 * 29.99921 * 3 2 1 6 6 H 1.48504 * 109.47189 * 149.99610 * 3 2 1 7 7 C 1.37877 * 119.99923 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00248 * 0.02562 * 7 2 1 9 9 C 1.50703 * 120.00001 * 180.02562 * 7 2 1 10 10 O 1.42898 * 109.47171 * 180.02562 * 9 7 2 11 11 C 1.42902 * 114.00186 * 180.02562 * 10 9 7 12 12 H 1.09000 * 109.25801 * 29.49394 * 11 10 9 13 13 C 1.51381 * 109.26532 * 269.99706 * 11 10 9 14 14 C 1.49512 * 117.51880 * 165.92259 * 13 11 10 15 15 C 1.50512 * 113.04244 * 79.72096 * 14 13 11 16 16 C 1.31666 * 116.92393 * 275.43030 * 15 14 13 17 17 C 1.50804 * 118.08679 * 0.27504 * 16 15 14 18 18 C 1.52713 * 108.95592 * 104.85429 * 17 16 15 19 19 C 1.53846 * 109.26483 * 148.95849 * 11 10 9 20 20 H 0.97000 * 119.99684 * 0.02562 * 1 2 3 21 21 H 1.09002 * 109.47152 * 60.00329 * 9 7 2 22 22 H 1.09001 * 109.46980 * 300.00429 * 9 7 2 23 23 H 1.09000 * 107.83817 * 287.95973 * 13 11 10 24 24 H 1.09006 * 107.83309 * 43.92975 * 13 11 10 25 25 H 1.09007 * 108.76512 * 200.64173 * 14 13 11 26 26 H 1.08998 * 108.76643 * 318.79733 * 14 13 11 27 27 H 1.08001 * 121.53677 * 95.45207 * 15 14 13 28 28 H 1.07998 * 120.95636 * 180.25468 * 16 15 14 29 29 H 1.08995 * 109.55899 * 224.70298 * 17 16 15 30 30 H 1.09003 * 109.55155 * 345.01962 * 17 16 15 31 31 H 1.09003 * 109.61673 * 61.91565 * 18 17 16 32 32 H 1.08997 * 109.62128 * 182.45797 * 18 17 16 33 33 H 1.09006 * 109.80706 * 345.70835 * 19 11 10 34 34 H 1.09002 * 109.80408 * 106.58173 * 19 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0011 10 8 3.9878 -2.5413 0.0010 11 6 5.4124 -2.6542 0.0021 12 1 5.8411 -1.7900 0.5094 13 6 5.9115 -2.6932 -1.4265 14 6 7.3747 -2.4856 -1.6531 15 6 8.1928 -3.7212 -1.3897 16 6 8.5515 -3.9441 -0.1426 17 6 8.1125 -2.9571 0.9097 18 6 6.9721 -3.5699 1.7196 19 6 5.8195 -3.9351 0.7509 20 1 -0.4850 0.8401 -0.0004 21 1 3.8745 -0.6801 0.8912 22 1 3.8752 -0.6804 -0.8888 23 1 5.6426 -3.6619 -1.8478 24 1 5.3753 -1.9283 -1.9884 25 1 7.5290 -2.1764 -2.6869 26 1 7.7216 -1.6884 -0.9956 27 1 8.4729 -4.3937 -2.1870 28 1 9.1427 -4.8091 0.1192 29 1 8.9495 -2.7320 1.5705 30 1 7.7679 -2.0412 0.4296 31 1 7.3242 -4.4691 2.2251 32 1 6.6170 -2.8485 2.4555 33 1 4.9698 -4.3185 1.3158 34 1 6.1599 -4.6868 0.0387 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205610851.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:27 Heat of formation + Delta-G solvation = -60.739127 kcal Electronic energy + Delta-G solvation = -14230.119013 eV Core-core repulsion = 11934.190968 eV Total energy + Delta-G solvation = -2295.928044 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.136 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.42337 -37.90594 -34.94423 -33.99611 -32.93639 -30.07766 -27.59587 -26.12729 -24.03372 -22.65749 -21.60263 -19.20389 -18.77270 -17.82524 -16.70833 -16.45300 -15.95489 -15.85909 -15.10824 -14.75275 -14.56535 -14.39584 -13.69570 -13.44644 -13.17139 -12.87885 -12.74348 -12.30165 -12.01191 -11.93765 -11.81732 -11.77340 -11.56580 -11.30380 -10.94439 -10.82942 -10.27512 -9.75246 -8.40005 -6.48169 1.30401 1.33644 1.40235 1.44672 2.26853 2.92225 3.02312 3.73093 3.84888 4.07929 4.15814 4.22846 4.31731 4.38180 4.50387 4.54963 4.63064 4.75840 4.86796 4.94919 4.99129 5.00954 5.06432 5.16577 5.26577 5.34324 5.35190 5.42081 5.49004 5.83449 5.95726 6.08600 6.55904 6.77053 7.16709 8.77227 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.047251 B = 0.007494 C = 0.007288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 592.437305 B = 3735.669877 C = 3841.093451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C 0.014 3.986 3 Si 0.953 3.047 4 H -0.259 1.259 5 H -0.270 1.270 6 H -0.246 1.246 7 C -0.548 4.548 8 H 0.029 0.971 9 C 0.182 3.818 10 O -0.404 6.404 11 C 0.080 3.920 12 H 0.055 0.945 13 C -0.132 4.132 14 C -0.088 4.088 15 C -0.168 4.168 16 C -0.151 4.151 17 C -0.113 4.113 18 C -0.107 4.107 19 C -0.114 4.114 20 H 0.274 0.726 21 H 0.010 0.990 22 H 0.008 0.992 23 H 0.056 0.944 24 H 0.044 0.956 25 H 0.074 0.926 26 H 0.076 0.924 27 H 0.127 0.873 28 H 0.127 0.873 29 H 0.083 0.917 30 H 0.072 0.928 31 H 0.083 0.917 32 H 0.061 0.939 33 H 0.055 0.945 34 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.275 -4.029 0.068 20.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.184 4.184 3 Si 0.774 3.226 4 H -0.183 1.183 5 H -0.195 1.195 6 H -0.170 1.170 7 C -0.586 4.586 8 H 0.047 0.953 9 C 0.106 3.894 10 O -0.324 6.324 11 C 0.023 3.977 12 H 0.073 0.927 13 C -0.170 4.170 14 C -0.125 4.125 15 C -0.186 4.186 16 C -0.169 4.169 17 C -0.150 4.150 18 C -0.144 4.144 19 C -0.152 4.152 20 H 0.083 0.917 21 H 0.028 0.972 22 H 0.025 0.975 23 H 0.075 0.925 24 H 0.062 0.938 25 H 0.093 0.907 26 H 0.094 0.906 27 H 0.144 0.856 28 H 0.145 0.855 29 H 0.101 0.899 30 H 0.090 0.910 31 H 0.102 0.898 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 19.977 -4.075 0.062 20.388 hybrid contribution -0.449 0.698 -0.184 0.850 sum 19.528 -3.377 -0.122 19.818 Atomic orbital electron populations 1.70030 1.08222 1.28833 1.50920 1.25844 0.95820 1.03384 0.93365 0.85637 0.79495 0.77548 0.79887 1.18310 1.19500 1.16952 1.21180 0.90990 0.93865 1.52551 0.95253 1.20310 0.93216 0.81165 0.94686 1.87931 1.21444 1.28167 1.94867 1.22177 0.80988 0.98989 0.95572 0.92712 1.20965 0.96931 1.02254 0.96860 1.19954 0.92253 0.97701 1.02610 1.23091 0.99349 0.98369 0.97783 1.23195 0.99701 0.99700 0.94277 1.21088 0.98222 0.98305 0.97396 1.21796 0.94222 1.01566 0.96814 1.22297 0.98360 0.95793 0.98738 0.91719 0.97247 0.97455 0.92499 0.93753 0.90693 0.90562 0.85555 0.85473 0.89859 0.90975 0.89849 0.92063 0.92603 0.90297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.97 13.96 21.45 0.30 -59.67 16 2 C 0.01 0.84 5.47 84.65 0.46 1.31 16 3 Si 0.95 43.94 27.47 68.60 1.88 45.83 16 4 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 5 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 6 H -0.25 -10.48 6.54 99.48 0.65 -9.83 16 7 C -0.55 -34.29 9.99 25.60 0.26 -34.04 16 8 H 0.03 2.06 8.06 -2.91 -0.02 2.04 16 9 C 0.18 9.45 4.50 71.24 0.32 9.77 16 10 O -0.40 -19.65 9.83 -148.98 -1.46 -21.12 16 11 C 0.08 2.86 2.16 30.35 0.07 2.93 16 12 H 0.05 1.88 6.19 -2.39 -0.01 1.87 16 13 C -0.13 -4.14 4.54 28.95 0.13 -4.01 16 14 C -0.09 -2.07 5.13 28.67 0.15 -1.92 16 15 C -0.17 -3.34 9.28 24.97 0.23 -3.10 16 16 C -0.15 -2.79 8.55 25.06 0.21 -2.57 16 17 C -0.11 -2.25 5.42 29.79 0.16 -2.09 16 18 C -0.11 -2.41 5.60 31.16 0.17 -2.24 16 19 C -0.11 -3.40 5.47 31.54 0.17 -3.22 16 20 H 0.27 15.94 8.31 -92.71 -0.77 15.17 16 21 H 0.01 0.49 7.14 -2.39 -0.02 0.47 16 22 H 0.01 0.38 7.02 -2.39 -0.02 0.37 16 23 H 0.06 1.80 7.71 -2.39 -0.02 1.79 16 24 H 0.04 1.54 7.47 -2.38 -0.02 1.53 16 25 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 26 H 0.08 1.73 5.63 -2.39 -0.01 1.72 16 27 H 0.13 2.12 8.06 -2.91 -0.02 2.09 16 28 H 0.13 1.87 8.06 -2.91 -0.02 1.85 16 29 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.07 1.61 3.56 -2.39 -0.01 1.60 16 31 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.06 1.86 7.96 -2.38 -0.02 1.85 16 34 H 0.08 2.16 6.28 -2.39 -0.01 2.15 16 Total: -1.00 -69.44 262.12 4.06 -65.38 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: 1.01 Total: 8.78 kcal Atomic # 6 Polarization: -41.53 SS G_CDS: 2.34 Total: -39.19 kcal Atomic # 7 Polarization: -59.97 SS G_CDS: 0.30 Total: -59.67 kcal Atomic # 8 Polarization: -19.65 SS G_CDS: -1.46 Total: -21.12 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 1.88 Total: 45.83 kcal Total: -69.44 4.06 -65.38 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205610851.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.639 kcal (2) G-P(sol) polarization free energy of solvation -69.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds