Wall clock time and date at job start Sun Mar 29 2020 21:45:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86805 * 119.99815 * 2 1 4 4 H 1.48503 * 109.47152 * 270.00062 * 3 2 1 5 5 H 1.48504 * 109.47367 * 29.99932 * 3 2 1 6 6 H 1.48496 * 109.47301 * 149.99966 * 3 2 1 7 7 C 1.37865 * 120.00259 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00472 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99887 * 0.02562 * 7 2 1 10 10 O 1.42902 * 109.46872 * 180.02562 * 9 7 2 11 11 C 1.42907 * 113.99744 * 180.02562 * 10 9 7 12 12 H 1.08998 * 109.23245 * 329.47493 * 11 10 9 13 13 C 1.51389 * 109.26419 * 88.95791 * 11 10 9 14 14 C 1.49514 * 117.51758 * 194.07588 * 13 11 10 15 15 C 1.50522 * 113.04338 * 280.29082 * 14 13 11 16 16 C 1.31661 * 116.92786 * 84.56382 * 15 14 13 17 17 C 1.50806 * 118.08416 * 359.72503 * 16 15 14 18 18 C 1.52708 * 108.95364 * 255.13760 * 17 16 15 19 19 C 1.53858 * 109.26499 * 209.99973 * 11 10 9 20 20 H 0.97003 * 120.00112 * 0.02562 * 1 2 3 21 21 H 1.08998 * 109.46969 * 60.00194 * 9 7 2 22 22 H 1.08997 * 109.47440 * 299.99902 * 9 7 2 23 23 H 1.08998 * 107.83734 * 316.11274 * 13 11 10 24 24 H 1.09000 * 107.83614 * 72.08597 * 13 11 10 25 25 H 1.09004 * 108.76787 * 41.20429 * 14 13 11 26 26 H 1.08996 * 108.76740 * 159.36653 * 14 13 11 27 27 H 1.07998 * 121.53203 * 264.58242 * 15 14 13 28 28 H 1.08000 * 120.95665 * 179.97438 * 16 15 14 29 29 H 1.08994 * 109.55698 * 14.98307 * 17 16 15 30 30 H 1.09001 * 109.55255 * 135.29709 * 17 16 15 31 31 H 1.09005 * 109.61959 * 177.54227 * 18 17 16 32 32 H 1.09000 * 109.62340 * 298.09390 * 18 17 16 33 33 H 1.09000 * 109.80010 * 14.28437 * 19 11 10 34 34 H 1.09005 * 109.79792 * 253.41187 * 19 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1939 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 8 2.1797 -3.5852 0.0017 11 6 1.5651 -4.8753 0.0013 12 1 0.6098 -4.8182 0.5229 13 6 1.3285 -5.3153 -1.4278 14 6 0.4137 -6.4768 -1.6505 15 6 1.0784 -7.8053 -1.4075 16 6 1.1103 -8.2375 -0.1643 17 6 0.4905 -7.3724 0.9042 18 6 1.6032 -6.6978 1.7036 19 6 2.4816 -5.8744 0.7286 20 1 -0.4850 0.8401 -0.0004 21 1 0.6247 -2.5570 -0.8897 22 1 0.6240 -2.5567 0.8903 23 1 0.9268 -4.4639 -1.9771 24 1 2.2955 -5.5640 -1.8651 25 1 -0.4404 -6.3842 -0.9797 26 1 0.0538 -6.4476 -2.6789 27 1 1.5095 -8.3774 -2.2157 28 1 1.5707 -9.1824 0.0838 29 1 -0.1373 -6.6122 0.4395 30 1 -0.1134 -7.9901 1.5690 31 1 1.1668 -6.0355 2.4513 32 1 2.2131 -7.4565 2.1940 33 1 3.2467 -5.3348 1.2868 34 1 2.9518 -6.5392 0.0040 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205610853.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:29 Heat of formation + Delta-G solvation = -46.556356 kcal Electronic energy + Delta-G solvation = -14168.309582 eV Core-core repulsion = 11872.996549 eV Total energy + Delta-G solvation = -2295.313033 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.136 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.04778 -36.17598 -32.93681 -32.74342 -31.39358 -27.41554 -26.28604 -24.83257 -22.37151 -21.37274 -20.26201 -17.87195 -16.44134 -16.21087 -15.22849 -14.77094 -14.54502 -14.17928 -13.64195 -13.41920 -12.93867 -12.46644 -12.16323 -11.83000 -11.52774 -11.13477 -11.00493 -10.86934 -10.66831 -10.65132 -10.38447 -10.20246 -10.10166 -9.54648 -9.07634 -8.85613 -8.72155 -8.10205 -6.09412 -4.10976 2.33390 3.31198 3.36101 3.41659 4.35952 4.74414 4.93842 5.07662 5.21346 5.26169 5.28048 5.42376 5.55185 5.66469 5.71946 5.79171 5.87071 6.05022 6.10059 6.17482 6.31977 6.37079 6.47471 6.53236 6.67511 6.76866 6.84047 7.02139 7.16708 7.47061 7.82035 8.18945 8.64215 9.03664 9.54057 11.02096 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.057604 B = 0.006654 C = 0.006446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 485.961948 B = 4206.674592 C = 4342.514888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.056 3.944 3 Si 0.907 3.093 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.515 4.515 8 H 0.066 0.934 9 C 0.195 3.805 10 O -0.391 6.391 11 C 0.094 3.906 12 H 0.049 0.951 13 C -0.138 4.138 14 C -0.091 4.091 15 C -0.158 4.158 16 C -0.157 4.157 17 C -0.112 4.112 18 C -0.112 4.112 19 C -0.117 4.117 20 H 0.264 0.736 21 H 0.004 0.996 22 H 0.004 0.996 23 H 0.065 0.935 24 H 0.058 0.942 25 H 0.072 0.928 26 H 0.062 0.938 27 H 0.110 0.890 28 H 0.106 0.894 29 H 0.085 0.915 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.072 0.928 34 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.599 -14.229 -0.120 14.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.734 3.266 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.196 1.196 7 C -0.553 4.553 8 H 0.084 0.916 9 C 0.120 3.880 10 O -0.310 6.310 11 C 0.035 3.965 12 H 0.067 0.933 13 C -0.176 4.176 14 C -0.128 4.128 15 C -0.176 4.176 16 C -0.175 4.175 17 C -0.149 4.149 18 C -0.149 4.149 19 C -0.154 4.154 20 H 0.073 0.927 21 H 0.022 0.978 22 H 0.022 0.978 23 H 0.084 0.916 24 H 0.077 0.923 25 H 0.091 0.909 26 H 0.080 0.920 27 H 0.128 0.872 28 H 0.124 0.876 29 H 0.103 0.897 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.091 0.909 34 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.639 -14.052 -0.122 14.067 hybrid contribution 0.069 0.811 -0.147 0.827 sum 0.708 -13.241 -0.269 13.263 Atomic orbital electron populations 1.69962 1.06099 1.27107 1.50662 1.24944 0.94967 0.99409 0.95177 0.86352 0.79693 0.82316 0.78228 1.20474 1.21080 1.19623 1.21083 0.94063 0.89467 1.50675 0.91594 1.20219 0.88802 0.83710 0.95220 1.87917 1.35541 1.12895 1.94684 1.21703 0.95659 0.85589 0.93512 0.93276 1.21020 1.00177 0.97385 0.99033 1.20010 0.98711 0.92358 1.01728 1.23030 1.00592 0.97089 0.96903 1.23005 1.00596 0.99128 0.94749 1.21078 0.98174 0.98739 0.96865 1.21812 0.96883 0.98679 0.97530 1.22296 0.98104 0.96721 0.98315 0.92687 0.97780 0.97808 0.91604 0.92284 0.90939 0.91961 0.87181 0.87573 0.89737 0.91959 0.91589 0.92122 0.90893 0.91464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.14 13.29 55.43 0.74 -26.40 16 2 C 0.06 1.64 5.46 -17.83 -0.10 1.54 16 3 Si 0.91 22.04 29.54 -169.99 -5.02 17.02 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.51 -15.38 9.43 -34.44 -0.32 -15.71 16 8 H 0.07 1.96 7.81 -52.48 -0.41 1.55 16 9 C 0.19 5.42 5.43 36.01 0.20 5.62 16 10 O -0.39 -9.64 9.84 -35.23 -0.35 -9.99 16 11 C 0.09 1.80 2.16 -27.10 -0.06 1.74 16 12 H 0.05 0.95 6.21 -51.93 -0.32 0.63 16 13 C -0.14 -2.37 4.54 -29.27 -0.13 -2.50 16 14 C -0.09 -1.26 5.13 -29.69 -0.15 -1.41 16 15 C -0.16 -1.93 9.28 -36.26 -0.34 -2.26 16 16 C -0.16 -1.84 8.55 -36.13 -0.31 -2.15 16 17 C -0.11 -1.38 5.42 -27.98 -0.15 -1.54 16 18 C -0.11 -1.48 5.60 -25.87 -0.14 -1.63 16 19 C -0.12 -1.87 5.48 -25.27 -0.14 -2.01 16 20 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 21 H 0.00 0.13 7.51 -51.93 -0.39 -0.26 16 22 H 0.00 0.12 8.08 -51.93 -0.42 -0.30 16 23 H 0.07 1.26 7.38 -51.93 -0.38 0.87 16 24 H 0.06 1.00 7.71 -51.93 -0.40 0.60 16 25 H 0.07 1.00 5.63 -51.93 -0.29 0.70 16 26 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.11 1.17 8.06 -52.49 -0.42 0.75 16 28 H 0.11 1.08 8.06 -52.49 -0.42 0.65 16 29 H 0.08 1.15 3.56 -51.93 -0.18 0.96 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.07 1.25 7.96 -51.93 -0.41 0.84 16 34 H 0.07 1.01 6.28 -51.93 -0.33 0.69 16 LS Contribution 265.58 15.07 4.00 4.00 Total: -1.00 -30.71 265.58 -7.49 -38.20 By element: Atomic # 1 Polarization: 2.68 SS G_CDS: -5.21 Total: -2.54 kcal Atomic # 6 Polarization: -18.65 SS G_CDS: -1.65 Total: -20.30 kcal Atomic # 7 Polarization: -27.14 SS G_CDS: 0.74 Total: -26.40 kcal Atomic # 8 Polarization: -9.64 SS G_CDS: -0.35 Total: -9.99 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -30.71 -7.49 -38.20 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205610853.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.352 kcal (2) G-P(sol) polarization free energy of solvation -30.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds