Wall clock time and date at job start Sun Mar 29 2020 21:45:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86805 * 119.99815 * 2 1 4 4 H 1.48503 * 109.47152 * 270.00062 * 3 2 1 5 5 H 1.48504 * 109.47367 * 29.99932 * 3 2 1 6 6 H 1.48496 * 109.47301 * 149.99966 * 3 2 1 7 7 C 1.37865 * 120.00259 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00472 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99887 * 0.02562 * 7 2 1 10 10 O 1.42902 * 109.46872 * 180.02562 * 9 7 2 11 11 C 1.42907 * 113.99744 * 180.02562 * 10 9 7 12 12 H 1.08998 * 109.23245 * 329.47493 * 11 10 9 13 13 C 1.51389 * 109.26419 * 88.95791 * 11 10 9 14 14 C 1.49514 * 117.51758 * 194.07588 * 13 11 10 15 15 C 1.50522 * 113.04338 * 280.29082 * 14 13 11 16 16 C 1.31661 * 116.92786 * 84.56382 * 15 14 13 17 17 C 1.50806 * 118.08416 * 359.72503 * 16 15 14 18 18 C 1.52708 * 108.95364 * 255.13760 * 17 16 15 19 19 C 1.53858 * 109.26499 * 209.99973 * 11 10 9 20 20 H 0.97003 * 120.00112 * 0.02562 * 1 2 3 21 21 H 1.08998 * 109.46969 * 60.00194 * 9 7 2 22 22 H 1.08997 * 109.47440 * 299.99902 * 9 7 2 23 23 H 1.08998 * 107.83734 * 316.11274 * 13 11 10 24 24 H 1.09000 * 107.83614 * 72.08597 * 13 11 10 25 25 H 1.09004 * 108.76787 * 41.20429 * 14 13 11 26 26 H 1.08996 * 108.76740 * 159.36653 * 14 13 11 27 27 H 1.07998 * 121.53203 * 264.58242 * 15 14 13 28 28 H 1.08000 * 120.95665 * 179.97438 * 16 15 14 29 29 H 1.08994 * 109.55698 * 14.98307 * 17 16 15 30 30 H 1.09001 * 109.55255 * 135.29709 * 17 16 15 31 31 H 1.09005 * 109.61959 * 177.54227 * 18 17 16 32 32 H 1.09000 * 109.62340 * 298.09390 * 18 17 16 33 33 H 1.09000 * 109.80010 * 14.28437 * 19 11 10 34 34 H 1.09005 * 109.79792 * 253.41187 * 19 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1939 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 8 2.1797 -3.5852 0.0017 11 6 1.5651 -4.8753 0.0013 12 1 0.6098 -4.8182 0.5229 13 6 1.3285 -5.3153 -1.4278 14 6 0.4137 -6.4768 -1.6505 15 6 1.0784 -7.8053 -1.4075 16 6 1.1103 -8.2375 -0.1643 17 6 0.4905 -7.3724 0.9042 18 6 1.6032 -6.6978 1.7036 19 6 2.4816 -5.8744 0.7286 20 1 -0.4850 0.8401 -0.0004 21 1 0.6247 -2.5570 -0.8897 22 1 0.6240 -2.5567 0.8903 23 1 0.9268 -4.4639 -1.9771 24 1 2.2955 -5.5640 -1.8651 25 1 -0.4404 -6.3842 -0.9797 26 1 0.0538 -6.4476 -2.6789 27 1 1.5095 -8.3774 -2.2157 28 1 1.5707 -9.1824 0.0838 29 1 -0.1373 -6.6122 0.4395 30 1 -0.1134 -7.9901 1.5690 31 1 1.1668 -6.0355 2.4513 32 1 2.2131 -7.4565 2.1940 33 1 3.2467 -5.3348 1.2868 34 1 2.9518 -6.5392 0.0040 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205610853.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:29 Heat of formation + Delta-G solvation = -64.651209 kcal Electronic energy + Delta-G solvation = -14169.094234 eV Core-core repulsion = 11872.996549 eV Total energy + Delta-G solvation = -2296.097685 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.136 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.39969 -37.84592 -34.99635 -34.00152 -32.85648 -29.46241 -27.57985 -26.12783 -24.52502 -22.66891 -21.58084 -19.01902 -18.52226 -17.84355 -16.73786 -16.38365 -15.97693 -15.79742 -15.28763 -14.66894 -14.41863 -14.20046 -13.65682 -13.27064 -13.09028 -12.83713 -12.74912 -12.34169 -12.25038 -11.98819 -11.80586 -11.78714 -11.54603 -11.25300 -10.87349 -10.81442 -10.16826 -9.75938 -8.34192 -6.47307 1.38273 1.39592 1.41516 1.53670 2.33194 2.99207 3.13520 3.74167 3.84590 4.07417 4.16247 4.22749 4.33143 4.39006 4.52600 4.57835 4.74825 4.81386 4.87490 4.99005 5.00681 5.07104 5.11188 5.16685 5.25564 5.34641 5.37647 5.46427 5.54746 5.81736 5.95194 6.08852 6.54052 6.83125 7.25312 8.78200 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.057604 B = 0.006654 C = 0.006446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 485.961948 B = 4206.674592 C = 4342.514888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.006 3.994 3 Si 0.984 3.016 4 H -0.267 1.267 5 H -0.272 1.272 6 H -0.264 1.264 7 C -0.552 4.552 8 H 0.061 0.939 9 C 0.213 3.787 10 O -0.408 6.408 11 C 0.083 3.917 12 H 0.041 0.959 13 C -0.129 4.129 14 C -0.088 4.088 15 C -0.167 4.167 16 C -0.149 4.149 17 C -0.115 4.115 18 C -0.106 4.106 19 C -0.111 4.111 20 H 0.271 0.729 21 H -0.016 1.016 22 H -0.017 1.017 23 H 0.034 0.966 24 H 0.060 0.940 25 H 0.070 0.930 26 H 0.072 0.928 27 H 0.131 0.869 28 H 0.132 0.868 29 H 0.066 0.934 30 H 0.083 0.917 31 H 0.056 0.944 32 H 0.087 0.913 33 H 0.058 0.942 34 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.351 -15.175 0.010 15.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.192 4.192 3 Si 0.807 3.193 4 H -0.192 1.192 5 H -0.197 1.197 6 H -0.188 1.188 7 C -0.589 4.589 8 H 0.079 0.921 9 C 0.138 3.862 10 O -0.328 6.328 11 C 0.026 3.974 12 H 0.059 0.941 13 C -0.167 4.167 14 C -0.125 4.125 15 C -0.184 4.184 16 C -0.167 4.167 17 C -0.152 4.152 18 C -0.144 4.144 19 C -0.148 4.148 20 H 0.080 0.920 21 H 0.002 0.998 22 H 0.000 1.000 23 H 0.053 0.947 24 H 0.079 0.921 25 H 0.089 0.911 26 H 0.091 0.909 27 H 0.148 0.852 28 H 0.150 0.850 29 H 0.084 0.916 30 H 0.101 0.899 31 H 0.075 0.925 32 H 0.106 0.894 33 H 0.077 0.923 34 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 1.386 -15.026 0.006 15.090 hybrid contribution -0.208 1.043 -0.171 1.077 sum 1.178 -13.983 -0.165 14.033 Atomic orbital electron populations 1.70071 1.07801 1.28708 1.50382 1.25985 0.95987 1.03450 0.93781 0.85169 0.78378 0.76877 0.78903 1.19215 1.19723 1.18839 1.21416 0.94097 0.90961 1.52462 0.92089 1.19799 0.88578 0.84754 0.93108 1.87865 1.35667 1.14428 1.94852 1.22105 0.96063 0.83914 0.95355 0.94090 1.20935 1.00957 0.97797 0.96986 1.19946 0.98007 0.92194 1.02398 1.23079 1.01196 0.96192 0.97972 1.23196 0.99692 0.99680 0.94084 1.21085 0.97885 0.98750 0.97441 1.21789 0.97031 0.98768 0.96776 1.22279 0.97617 0.96126 0.98795 0.91978 0.99844 0.99976 0.94687 0.92088 0.91150 0.90888 0.85164 0.85023 0.91559 0.89868 0.92526 0.89433 0.92281 0.90013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.00 13.29 21.44 0.28 -56.71 16 2 C 0.01 0.38 5.46 84.65 0.46 0.84 16 3 Si 0.98 45.11 29.54 68.60 2.03 47.14 16 4 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 5 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 6 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 7 C -0.55 -33.93 9.43 25.60 0.24 -33.69 16 8 H 0.06 3.71 7.81 -2.91 -0.02 3.69 16 9 C 0.21 12.45 5.43 71.24 0.39 12.84 16 10 O -0.41 -21.02 9.84 -148.98 -1.47 -22.49 16 11 C 0.08 3.29 2.16 30.36 0.07 3.35 16 12 H 0.04 1.67 6.21 -2.39 -0.01 1.65 16 13 C -0.13 -4.51 4.54 28.95 0.13 -4.38 16 14 C -0.09 -2.38 5.13 28.68 0.15 -2.24 16 15 C -0.17 -3.63 9.28 24.97 0.23 -3.40 16 16 C -0.15 -3.01 8.55 25.06 0.21 -2.79 16 17 C -0.11 -2.60 5.42 29.78 0.16 -2.44 16 18 C -0.11 -2.65 5.60 31.15 0.17 -2.47 16 19 C -0.11 -3.48 5.48 31.54 0.17 -3.31 16 20 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 21 H -0.02 -0.99 7.51 -2.39 -0.02 -1.01 16 22 H -0.02 -1.07 8.08 -2.39 -0.02 -1.09 16 23 H 0.03 1.41 7.38 -2.39 -0.02 1.39 16 24 H 0.06 2.07 7.71 -2.39 -0.02 2.05 16 25 H 0.07 1.93 5.63 -2.38 -0.01 1.92 16 26 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 27 H 0.13 2.34 8.06 -2.91 -0.02 2.32 16 28 H 0.13 2.06 8.06 -2.91 -0.02 2.04 16 29 H 0.07 1.76 3.56 -2.39 -0.01 1.75 16 30 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.06 1.51 8.14 -2.38 -0.02 1.49 16 32 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.06 2.02 7.96 -2.39 -0.02 2.00 16 34 H 0.08 2.33 6.28 -2.38 -0.01 2.31 16 Total: -1.00 -67.09 265.58 4.29 -62.80 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: 1.06 Total: 6.96 kcal Atomic # 6 Polarization: -40.08 SS G_CDS: 2.39 Total: -37.69 kcal Atomic # 7 Polarization: -57.00 SS G_CDS: 0.28 Total: -56.71 kcal Atomic # 8 Polarization: -21.02 SS G_CDS: -1.47 Total: -22.49 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -67.09 4.29 -62.80 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205610853.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.854 kcal (2) G-P(sol) polarization free energy of solvation -67.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds