Wall clock time and date at job start Sun Mar 29 2020 21:32:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.46910 * 2 1 4 4 C 1.52997 * 109.46732 * 240.00514 * 2 1 3 5 5 C 1.50702 * 109.47070 * 174.99482 * 4 2 1 6 6 C 1.34520 * 125.78625 * 90.00256 * 5 4 2 7 7 C 1.41381 * 106.83580 * 180.29744 * 6 5 4 8 8 C 1.34513 * 106.84363 * 359.57150 * 7 6 5 9 9 O 1.34302 * 125.79164 * 270.04068 * 5 4 2 10 10 O 1.42891 * 109.47533 * 120.00343 * 2 1 3 11 11 C 1.42904 * 113.99905 * 269.99722 * 10 2 1 12 12 C 1.50703 * 109.46808 * 179.97438 * 11 10 2 13 13 H 1.07997 * 120.00726 * 359.97438 * 12 11 10 14 14 C 1.37882 * 119.99475 * 180.02562 * 12 11 10 15 15 N 1.31513 * 120.00222 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 119.99793 * 179.97438 * 14 12 11 17 17 H 1.48506 * 109.47025 * 89.99629 * 16 14 12 18 18 H 1.48496 * 109.47181 * 209.99594 * 16 14 12 19 19 H 1.48501 * 109.47192 * 330.00040 * 16 14 12 20 20 H 1.09003 * 109.46775 * 299.99585 * 1 2 3 21 21 H 1.08997 * 109.47460 * 59.99732 * 1 2 3 22 22 H 1.09000 * 109.47425 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.47588 * 54.99660 * 4 2 1 24 24 H 1.09001 * 109.47044 * 294.99661 * 4 2 1 25 25 H 1.08002 * 126.57789 * 0.02807 * 6 5 4 26 26 H 1.08009 * 126.57222 * 179.73218 * 7 6 5 27 27 H 1.07999 * 125.78721 * 180.19275 * 8 7 6 28 28 H 1.08994 * 109.47246 * 300.00162 * 11 10 2 29 29 H 1.09007 * 109.46895 * 60.00579 * 11 10 2 30 30 H 0.97001 * 119.99981 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2493 5 6 3.5418 -0.6147 -1.3129 6 6 4.4155 -1.4848 -0.7752 7 6 5.7104 -0.9973 -1.0659 8 6 5.5506 0.1365 -1.7719 9 8 4.2350 0.3652 -1.9154 10 8 2.0064 -0.6736 1.1666 11 6 2.2002 0.1829 2.2940 12 6 2.7005 -0.6286 3.4612 13 1 2.8546 -1.6920 3.3532 14 6 2.9605 -0.0133 4.6674 15 7 2.7724 1.2816 4.7992 16 14 3.5799 -1.0192 6.1145 17 1 5.0645 -1.0530 6.0946 18 1 3.1159 -0.4005 7.3822 19 1 3.0520 -2.4038 6.0171 20 1 -0.3633 0.5138 0.8901 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3634 -1.0276 -0.0005 23 1 1.6052 -0.2616 -2.1370 24 1 1.7515 -1.7714 -1.2057 25 1 4.1741 -2.3812 -0.2233 26 1 6.6480 -1.4499 -0.7785 27 1 6.3454 0.7593 -2.1549 28 1 2.9320 0.9513 2.0449 29 1 1.2539 0.6546 2.5589 30 1 2.9557 1.7144 5.6477 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205621633.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:32:13 Heat of formation + Delta-G solvation = -46.215300 kcal Electronic energy + Delta-G solvation = -13724.539168 eV Core-core repulsion = 11293.407829 eV Total energy + Delta-G solvation = -2431.131339 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.104 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -42.12628 -37.34934 -33.38481 -32.56049 -32.06772 -29.54205 -27.06252 -25.83501 -22.46123 -21.33022 -20.96494 -19.90280 -17.04830 -16.36438 -15.86952 -15.58503 -14.57245 -14.43062 -13.92488 -13.39117 -12.80256 -12.44229 -12.32950 -12.23824 -11.97872 -11.63188 -11.35474 -11.14747 -10.84533 -10.72927 -10.29165 -9.97012 -9.46744 -9.07842 -8.83597 -8.17422 -7.95552 -6.08705 -4.09985 2.13763 3.08315 3.31179 3.36004 3.37615 3.41227 4.35755 4.84057 5.01183 5.27708 5.40771 5.43898 5.45622 5.67045 5.70388 5.88611 6.03673 6.19323 6.23486 6.40101 6.42660 6.54527 6.63036 6.95111 7.15430 7.47543 7.55217 7.81708 8.18310 8.60568 9.03077 9.54470 11.02870 Molecular weight = 210.10amu Principal moments of inertia in cm(-1) A = 0.029275 B = 0.008888 C = 0.007500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.204524 B = 3149.414388 C = 3732.625292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.086 3.914 3 H 0.053 0.947 4 C -0.034 4.034 5 C -0.005 4.005 6 C -0.190 4.190 7 C -0.210 4.210 8 C -0.058 4.058 9 O -0.183 6.183 10 O -0.384 6.384 11 C 0.198 3.802 12 C -0.512 4.512 13 H 0.066 0.934 14 C 0.056 3.944 15 N -0.899 5.899 16 Si 0.906 3.094 17 H -0.279 1.279 18 H -0.285 1.285 19 H -0.272 1.272 20 H 0.062 0.938 21 H 0.055 0.945 22 H 0.060 0.940 23 H 0.084 0.916 24 H 0.097 0.903 25 H 0.148 0.852 26 H 0.143 0.857 27 H 0.197 0.803 28 H 0.003 0.997 29 H 0.004 0.996 30 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.011 -2.408 -12.157 12.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.026 3.974 3 H 0.071 0.929 4 C -0.071 4.071 5 C -0.054 4.054 6 C -0.209 4.209 7 C -0.229 4.229 8 C -0.125 4.125 9 O -0.080 6.080 10 O -0.304 6.304 11 C 0.124 3.876 12 C -0.550 4.550 13 H 0.084 0.916 14 C -0.145 4.145 15 N -0.538 5.538 16 Si 0.733 3.267 17 H -0.205 1.205 18 H -0.211 1.211 19 H -0.196 1.196 20 H 0.081 0.919 21 H 0.074 0.926 22 H 0.079 0.921 23 H 0.102 0.898 24 H 0.115 0.885 25 H 0.165 0.835 26 H 0.161 0.839 27 H 0.213 0.787 28 H 0.021 0.979 29 H 0.022 0.978 30 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.923 -2.220 -12.155 12.390 hybrid contribution 0.572 -0.146 1.063 1.216 sum 1.496 -2.365 -11.092 11.439 Atomic orbital electron populations 1.22256 0.96425 1.02336 1.01733 1.21822 0.92879 0.95736 0.86915 0.92914 1.20292 0.85426 1.03192 0.98174 1.22322 0.94741 0.88724 0.99630 1.21566 0.91771 1.03011 1.04554 1.21821 0.98883 0.98323 1.03887 1.23839 0.83101 1.00086 1.05505 1.83952 1.18083 1.44373 1.61552 1.87892 1.85877 1.36679 1.19951 1.20197 0.94925 0.90050 0.82445 1.21043 1.43903 0.95532 0.94507 0.91612 1.24944 0.95691 0.95102 0.98784 1.69965 1.48981 1.09079 1.25783 0.86363 0.79024 0.80136 0.81130 1.20504 1.21094 1.19627 0.91935 0.92647 0.92077 0.89792 0.88458 0.83461 0.83894 0.78661 0.97940 0.97786 0.92711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.70 9.53 37.16 0.35 -2.35 16 2 C 0.09 1.61 2.71 -26.73 -0.07 1.54 16 3 H 0.05 1.05 7.79 -51.93 -0.40 0.64 16 4 C -0.03 -0.52 5.46 -27.88 -0.15 -0.68 16 5 C 0.00 -0.08 6.35 -35.62 -0.23 -0.31 16 6 C -0.19 -3.41 10.76 -39.70 -0.43 -3.84 16 7 C -0.21 -3.35 10.91 -39.70 -0.43 -3.78 16 8 C -0.06 -0.86 12.09 29.42 0.36 -0.51 16 9 O -0.18 -3.13 10.65 5.71 0.06 -3.07 16 10 O -0.38 -9.23 9.68 -35.23 -0.34 -9.57 16 11 C 0.20 5.51 5.50 36.01 0.20 5.71 16 12 C -0.51 -15.24 9.43 -34.44 -0.32 -15.56 16 13 H 0.07 1.94 7.81 -52.49 -0.41 1.53 16 14 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 15 N -0.90 -27.28 13.29 55.43 0.74 -26.54 16 16 Si 0.91 22.12 29.54 -169.99 -5.02 17.10 16 17 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 18 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 19 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 20 H 0.06 1.08 7.87 -51.93 -0.41 0.67 16 21 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 22 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 23 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 24 H 0.10 1.40 8.14 -51.93 -0.42 0.97 16 25 H 0.15 2.61 8.06 -52.49 -0.42 2.19 16 26 H 0.14 1.93 8.06 -52.48 -0.42 1.51 16 27 H 0.20 2.03 8.06 -52.49 -0.42 1.61 16 28 H 0.00 0.08 8.08 -51.93 -0.42 -0.34 16 29 H 0.00 0.12 7.87 -51.93 -0.41 -0.28 16 30 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 267.16 15.07 4.03 4.03 Total: -1.00 -32.51 267.16 -5.51 -38.02 By element: Atomic # 1 Polarization: 2.41 SS G_CDS: -4.15 Total: -1.73 kcal Atomic # 6 Polarization: -17.40 SS G_CDS: -0.83 Total: -18.23 kcal Atomic # 7 Polarization: -27.28 SS G_CDS: 0.74 Total: -26.54 kcal Atomic # 8 Polarization: -12.36 SS G_CDS: -0.28 Total: -12.64 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -32.51 -5.51 -38.02 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205621633.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.194 kcal (2) G-P(sol) polarization free energy of solvation -32.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds