Wall clock time and date at job start Sun Mar 29 2020 21:33:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 C 1.52998 * 109.47207 * 131.70854 * 3 2 1 5 5 O 1.42891 * 109.47249 * 179.97438 * 4 3 2 6 6 C 1.42903 * 114.00030 * 180.02562 * 5 4 3 7 7 C 1.53935 * 113.73471 * 111.23481 * 6 5 4 8 8 N 1.48193 * 86.10337 * 90.77945 * 7 6 5 9 9 C 1.46894 * 111.06841 * 137.52059 * 8 7 6 10 10 C 1.50700 * 109.47159 * 70.57068 * 9 8 7 11 11 H 1.07999 * 119.99907 * 0.02562 * 10 9 8 12 12 C 1.37883 * 119.99829 * 179.97438 * 10 9 8 13 13 N 1.31511 * 120.00116 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 119.99852 * 179.97438 * 12 10 9 15 15 H 1.48502 * 109.46986 * 59.99806 * 14 12 10 16 16 H 1.48492 * 109.47245 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.47100 * 300.00224 * 14 12 10 18 18 C 1.47967 * 90.79407 * 24.60047 * 8 7 6 19 19 H 1.09000 * 109.47198 * 11.70731 * 3 2 1 20 20 H 1.09004 * 109.46794 * 251.70830 * 3 2 1 21 21 H 1.09010 * 109.46986 * 59.99942 * 4 3 2 22 22 H 1.08998 * 109.46857 * 300.00319 * 4 3 2 23 23 H 1.09002 * 112.93710 * 339.66760 * 6 5 4 24 24 H 1.09000 * 113.76137 * 205.06320 * 7 6 5 25 25 H 1.09002 * 113.75885 * 336.43020 * 7 6 5 26 26 H 1.08999 * 109.46814 * 190.56779 * 9 8 7 27 27 H 1.08996 * 109.47288 * 310.56415 * 9 8 7 28 28 H 0.96995 * 119.99693 * 179.97438 * 13 12 10 29 29 H 1.09001 * 113.75575 * 221.08036 * 18 8 7 30 30 H 1.08993 * 113.75515 * 89.72269 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1176 0.9606 -1.0769 5 8 4.5465 0.9617 -1.0765 6 6 5.1274 1.8310 -2.0506 7 6 5.8446 3.0505 -1.4438 8 7 7.0619 2.2053 -1.4396 9 6 8.2350 2.9669 -1.8888 10 6 8.6138 3.9744 -0.8340 11 1 8.0407 4.0419 0.0789 12 6 9.6927 4.8093 -1.0340 13 7 10.3915 4.7261 -2.1450 14 14 10.1618 6.0586 0.2731 15 1 10.4841 5.3529 1.5393 16 1 11.3485 6.8275 -0.1803 17 1 9.0261 6.9881 0.4998 18 6 6.5154 1.3769 -2.5372 19 1 2.9718 -1.0055 -0.2085 20 1 2.9712 0.3234 0.9758 21 1 2.7538 1.9668 -0.8683 22 1 2.7544 0.6379 -2.0526 23 1 4.4403 2.0833 -2.8584 24 1 5.9053 3.9047 -2.1180 25 1 5.4906 3.3174 -0.4480 26 1 9.0686 2.2849 -2.0558 27 1 7.9978 3.4852 -2.8178 28 1 11.1502 5.3137 -2.2858 29 1 6.6966 0.3092 -2.4134 30 1 6.7729 1.7407 -3.5318 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205622073.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:33:13 Heat of formation + Delta-G solvation = 15.869443 kcal Electronic energy + Delta-G solvation = -13147.664299 eV Core-core repulsion = 10751.517908 eV Total energy + Delta-G solvation = -2396.146391 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.46753 -37.36998 -36.27272 -32.89393 -31.78093 -28.94040 -25.64309 -25.01884 -23.86970 -21.69089 -19.47446 -17.63020 -16.64334 -16.30617 -15.94336 -15.38229 -14.70947 -14.28357 -13.86979 -13.71269 -13.24346 -12.83830 -12.74010 -12.26680 -11.95503 -11.65896 -11.50613 -11.04678 -11.01667 -10.71584 -10.56006 -10.38931 -9.61848 -9.28429 -9.17725 -8.48028 -7.69546 -6.05027 -4.06698 2.40728 2.53805 3.32772 3.34205 3.36772 3.40100 4.14276 4.41836 4.70601 4.73304 4.95764 5.04016 5.14566 5.25046 5.31292 5.53665 5.57481 5.87291 5.99908 6.20191 6.29716 6.47629 6.75587 7.19130 7.28911 7.35853 7.65267 7.89696 8.13632 8.43996 9.00923 9.57878 11.06289 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.056633 B = 0.005359 C = 0.005022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 494.293913 B = 5223.827429 C = 5573.737162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C 0.214 3.786 3 C -0.026 4.026 4 C 0.065 3.935 5 O -0.350 6.350 6 C 0.057 3.943 7 C 0.002 3.998 8 N -0.468 5.468 9 C 0.158 3.842 10 C -0.510 4.510 11 H 0.062 0.938 12 C 0.056 3.944 13 N -0.899 5.899 14 Si 0.899 3.101 15 H -0.275 1.275 16 H -0.288 1.288 17 H -0.277 1.277 18 C -0.002 4.002 19 H 0.118 0.882 20 H 0.120 0.880 21 H 0.057 0.943 22 H 0.055 0.945 23 H 0.067 0.933 24 H 0.073 0.927 25 H 0.082 0.918 26 H 0.032 0.968 27 H -0.003 1.003 28 H 0.262 0.738 29 H 0.085 0.915 30 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.583 -6.688 0.189 13.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.115 5.115 2 C -0.104 4.104 3 C -0.066 4.066 4 C -0.014 4.014 5 O -0.268 6.268 6 C -0.002 4.002 7 C -0.127 4.127 8 N -0.191 5.191 9 C 0.031 3.969 10 C -0.549 4.549 11 H 0.080 0.920 12 C -0.145 4.145 13 N -0.539 5.539 14 Si 0.727 3.273 15 H -0.201 1.201 16 H -0.213 1.213 17 H -0.203 1.203 18 C -0.131 4.131 19 H 0.136 0.864 20 H 0.138 0.862 21 H 0.075 0.925 22 H 0.073 0.927 23 H 0.085 0.915 24 H 0.091 0.909 25 H 0.100 0.900 26 H 0.050 0.950 27 H 0.015 0.985 28 H 0.072 0.928 29 H 0.103 0.897 30 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -12.763 -7.024 0.834 14.591 hybrid contribution 0.613 1.367 -0.324 1.532 sum -12.150 -5.657 0.510 13.412 Atomic orbital electron populations 1.81249 1.12961 1.08721 1.08603 1.28965 0.95010 0.93182 0.93237 1.19057 0.81019 1.03566 1.02916 1.22284 0.83199 0.98477 0.97424 1.87929 1.16985 1.64469 1.57420 1.23750 0.94221 0.91883 0.90319 1.24223 0.92311 0.94669 1.01520 1.68643 1.02803 1.14498 1.33171 1.20230 0.88771 0.92840 0.95015 1.21070 1.13190 1.17053 1.03542 0.92012 1.24994 0.96211 0.97608 0.95732 1.69943 1.19475 1.39225 1.25212 0.86548 0.77816 0.81113 0.81873 1.20096 1.21331 1.20266 1.24142 0.92118 1.01058 0.95782 0.86363 0.86177 0.92487 0.92699 0.91473 0.90922 0.89962 0.94950 0.98486 0.92835 0.89653 0.91043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -5.47 18.54 42.16 0.78 -4.68 16 2 C 0.21 2.01 15.43 -20.76 -0.32 1.69 16 3 C -0.03 -0.18 6.07 -29.52 -0.18 -0.36 16 4 C 0.06 0.59 5.74 37.16 0.21 0.81 16 5 O -0.35 -4.69 10.36 -35.23 -0.37 -5.06 16 6 C 0.06 0.83 4.48 -25.80 -0.12 0.71 16 7 C 0.00 0.04 7.32 -2.63 -0.02 0.02 16 8 N -0.47 -10.09 6.25 -239.73 -1.50 -11.59 16 9 C 0.16 4.09 4.58 -4.98 -0.02 4.07 16 10 C -0.51 -14.38 8.84 -34.44 -0.30 -14.68 16 11 H 0.06 1.73 7.80 -52.49 -0.41 1.32 16 12 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 13 N -0.90 -26.62 13.29 55.43 0.74 -25.88 16 14 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 16 15 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 16 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 17 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 18 C 0.00 -0.03 7.81 -2.76 -0.02 -0.05 16 19 H 0.12 0.65 8.14 -51.93 -0.42 0.23 16 20 H 0.12 0.74 8.14 -51.93 -0.42 0.32 16 21 H 0.06 0.51 8.14 -51.92 -0.42 0.09 16 22 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 23 H 0.07 0.80 7.89 -51.93 -0.41 0.39 16 24 H 0.07 1.36 7.79 -51.93 -0.40 0.95 16 25 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 26 H 0.03 0.91 8.14 -51.93 -0.42 0.48 16 27 H 0.00 -0.07 7.70 -51.93 -0.40 -0.47 16 28 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 29 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 30 H 0.07 1.18 7.79 -51.93 -0.40 0.77 16 LS Contribution 269.30 15.07 4.06 4.06 Total: -1.00 -32.15 269.30 -6.30 -38.45 By element: Atomic # 1 Polarization: -1.43 SS G_CDS: -4.12 Total: -5.55 kcal Atomic # 6 Polarization: -5.44 SS G_CDS: -0.87 Total: -6.30 kcal Atomic # 7 Polarization: -42.17 SS G_CDS: 0.02 Total: -42.15 kcal Atomic # 8 Polarization: -4.69 SS G_CDS: -0.37 Total: -5.06 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -32.15 -6.30 -38.45 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205622073.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.322 kcal (2) G-P(sol) polarization free energy of solvation -32.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.452 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds