Wall clock time and date at job start Sun Mar 29 2020 21:45:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 119.99772 * 2 1 4 4 H 1.48506 * 109.47297 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47261 * 60.00248 * 3 2 1 6 6 H 1.48500 * 109.47454 * 300.00241 * 3 2 1 7 7 C 1.37875 * 120.00380 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00559 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99838 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47207 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.46852 * 179.97438 * 10 9 7 12 12 O 1.42903 * 109.46430 * 180.02562 * 11 10 9 13 13 C 1.42904 * 113.99687 * 180.02562 * 12 11 10 14 14 H 1.09002 * 109.35625 * 30.26976 * 13 12 11 15 15 C 1.50075 * 109.35577 * 270.69050 * 13 12 11 16 16 C 1.29441 * 124.07474 * 222.66205 * 15 13 12 17 17 C 1.50067 * 124.07569 * 0.46528 * 16 15 13 18 18 C 1.53022 * 110.14900 * 342.87247 * 17 16 15 19 19 C 1.53019 * 109.35897 * 150.00082 * 13 12 11 20 20 H 0.97001 * 119.99667 * 180.02562 * 1 2 3 21 21 H 1.09005 * 109.46894 * 300.00433 * 9 7 2 22 22 H 1.08998 * 109.47107 * 60.00164 * 9 7 2 23 23 H 1.08993 * 109.47110 * 300.00135 * 10 9 7 24 24 H 1.09006 * 109.46692 * 60.00091 * 10 9 7 25 25 H 1.08999 * 109.47147 * 299.99896 * 11 10 9 26 26 H 1.08998 * 109.47134 * 60.00300 * 11 10 9 27 27 H 1.07998 * 117.96217 * 42.63433 * 15 13 12 28 28 H 1.08005 * 117.96482 * 180.48713 * 16 15 13 29 29 H 1.09000 * 109.36307 * 222.66206 * 17 16 15 30 30 H 1.09000 * 109.24942 * 103.00626 * 17 16 15 31 31 H 1.09000 * 109.63794 * 289.75131 * 18 17 16 32 32 H 1.08998 * 109.82075 * 169.22107 * 18 17 16 33 33 H 1.09004 * 109.64225 * 289.32275 * 19 13 12 34 34 H 1.08993 * 109.64384 * 49.95779 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 1.2125 6 1 1.8903 2.3965 -1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4804 -4.9871 0.0001 12 8 2.4091 -6.0731 0.0007 13 6 1.7946 -7.3633 0.0008 14 1 0.8375 -7.3077 -0.5180 15 6 1.5647 -7.8047 1.4166 16 6 1.7927 -9.0034 1.8486 17 6 2.3280 -10.1167 0.9965 18 6 2.1605 -9.7735 -0.4853 19 6 2.7055 -8.3591 -0.7205 20 1 -0.4850 -0.8401 0.0004 21 1 0.6247 -2.5570 0.8897 22 1 0.6242 -2.5567 -0.8903 23 1 2.8720 -3.6043 -0.8904 24 1 2.8720 -3.6042 0.8895 25 1 0.8540 -5.0445 0.8903 26 1 0.8535 -5.0451 -0.8896 27 1 1.1860 -7.0768 2.1188 28 1 1.5843 -9.2158 2.8869 29 1 1.7845 -11.0351 1.2184 30 1 3.3858 -10.2608 1.2165 31 1 1.1042 -9.8083 -0.7522 32 1 2.7160 -10.4862 -1.0948 33 1 2.7125 -8.1420 -1.7887 34 1 3.7172 -8.2853 -0.3218 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205664879.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:38 Heat of formation + Delta-G solvation = -66.187876 kcal Electronic energy + Delta-G solvation = -13444.171289 eV Core-core repulsion = 11148.006969 eV Total energy + Delta-G solvation = -2296.164320 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.136 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.13586 -36.61736 -34.10844 -31.58106 -31.16538 -29.45202 -26.15448 -23.17461 -22.68352 -22.28038 -20.47255 -18.10097 -17.02479 -16.54758 -15.80232 -15.23473 -14.59305 -13.73727 -13.61909 -13.57593 -12.91353 -12.87264 -12.62372 -12.17885 -12.04312 -11.44361 -11.29423 -10.83544 -10.74066 -10.56832 -10.46934 -10.10360 -9.91680 -9.82228 -9.25017 -9.06501 -8.54081 -8.30416 -6.34847 -4.03464 2.15216 3.45977 3.50144 3.64021 4.00385 4.56865 4.57732 4.64272 4.91084 5.13500 5.16499 5.28207 5.37597 5.42691 5.52425 5.64799 5.66618 5.69526 5.79942 5.84278 6.11249 6.13849 6.15051 6.53067 6.57965 6.60818 6.82023 6.95833 7.39642 7.53534 7.57350 8.24198 8.49547 8.90597 9.68786 11.06073 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.084588 B = 0.004639 C = 0.004587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 330.938026 B = 6034.012968 C = 6103.197433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.013 3.987 3 Si 1.075 2.925 4 H -0.289 1.289 5 H -0.287 1.287 6 H -0.287 1.287 7 C -0.600 4.600 8 H 0.051 0.949 9 C 0.010 3.990 10 C -0.101 4.101 11 C 0.061 3.939 12 O -0.379 6.379 13 C 0.117 3.883 14 H 0.066 0.934 15 C -0.169 4.169 16 C -0.153 4.153 17 C -0.092 4.092 18 C -0.118 4.118 19 C -0.116 4.116 20 H 0.268 0.732 21 H 0.008 0.992 22 H 0.008 0.992 23 H 0.057 0.943 24 H 0.057 0.943 25 H 0.042 0.958 26 H 0.043 0.957 27 H 0.106 0.894 28 H 0.103 0.897 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.133 -18.821 0.489 19.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.190 4.190 3 Si 0.904 3.096 4 H -0.215 1.215 5 H -0.213 1.213 6 H -0.213 1.213 7 C -0.638 4.638 8 H 0.069 0.931 9 C -0.027 4.027 10 C -0.138 4.138 11 C -0.015 4.015 12 O -0.298 6.298 13 C 0.059 3.941 14 H 0.083 0.917 15 C -0.187 4.187 16 C -0.171 4.171 17 C -0.129 4.129 18 C -0.155 4.155 19 C -0.154 4.154 20 H 0.079 0.921 21 H 0.026 0.974 22 H 0.026 0.974 23 H 0.076 0.924 24 H 0.076 0.924 25 H 0.060 0.940 26 H 0.061 0.939 27 H 0.124 0.876 28 H 0.121 0.879 29 H 0.089 0.911 30 H 0.092 0.908 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 3.143 -17.143 0.492 17.436 hybrid contribution -0.212 -1.649 0.197 1.674 sum 2.930 -18.792 0.689 19.032 Atomic orbital electron populations 1.70727 1.06902 1.30584 1.46986 1.25883 0.96561 1.02799 0.93758 0.83458 0.74485 0.74721 0.76941 1.21473 1.21334 1.21331 1.22096 0.94475 0.91823 1.55452 0.93075 1.19189 0.94584 0.92950 0.96022 1.21506 0.99333 0.91265 1.01736 1.22835 0.92253 0.87177 0.99280 1.87985 1.33980 1.12966 1.94918 1.20828 0.96251 0.84464 0.92578 0.91666 1.22665 1.00611 0.97114 0.98326 1.22017 1.00582 0.94938 0.99577 1.20479 1.01154 0.97023 0.94233 1.21599 1.01521 0.96287 0.96120 1.21641 0.99980 0.93243 1.00487 0.92121 0.97419 0.97388 0.92404 0.92441 0.93973 0.93878 0.87632 0.87925 0.91146 0.90785 0.91688 0.91170 0.91082 0.90722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.61 13.65 55.43 0.76 -27.85 16 2 C 0.01 0.39 5.46 -17.82 -0.10 0.30 16 3 Si 1.08 25.93 29.90 -169.99 -5.08 20.85 16 4 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.60 -17.70 9.11 -34.44 -0.31 -18.01 16 8 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 9 C 0.01 0.25 4.28 -27.88 -0.12 0.14 16 10 C -0.10 -2.25 5.52 -26.73 -0.15 -2.40 16 11 C 0.06 1.14 5.73 37.16 0.21 1.35 16 12 O -0.38 -6.75 9.96 -35.23 -0.35 -7.10 16 13 C 0.12 1.64 2.86 -28.18 -0.08 1.56 16 14 H 0.07 0.88 7.78 -51.93 -0.40 0.48 16 15 C -0.17 -2.23 9.36 -35.90 -0.34 -2.57 16 16 C -0.15 -1.69 9.80 -35.90 -0.35 -2.04 16 17 C -0.09 -0.83 6.11 -28.18 -0.17 -1.00 16 18 C -0.12 -1.08 6.01 -26.51 -0.16 -1.24 16 19 C -0.12 -1.36 5.66 -26.51 -0.15 -1.51 16 20 H 0.27 8.33 7.22 -40.82 -0.29 8.04 16 21 H 0.01 0.21 8.01 -51.93 -0.42 -0.21 16 22 H 0.01 0.21 8.01 -51.93 -0.42 -0.20 16 23 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 24 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 25 H 0.04 0.77 8.13 -51.93 -0.42 0.34 16 26 H 0.04 0.78 8.08 -51.93 -0.42 0.36 16 27 H 0.11 1.45 8.05 -52.49 -0.42 1.03 16 28 H 0.10 1.00 8.06 -52.48 -0.42 0.58 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.58 8.12 -51.93 -0.42 0.16 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.07 0.92 8.12 -51.93 -0.42 0.50 16 LS Contribution 280.93 15.07 4.23 4.23 Total: -1.00 -31.54 280.93 -7.96 -39.50 By element: Atomic # 1 Polarization: 1.59 SS G_CDS: -5.80 Total: -4.21 kcal Atomic # 6 Polarization: -23.71 SS G_CDS: -1.72 Total: -25.42 kcal Atomic # 7 Polarization: -28.61 SS G_CDS: 0.76 Total: -27.85 kcal Atomic # 8 Polarization: -6.75 SS G_CDS: -0.35 Total: -7.10 kcal Atomic # 14 Polarization: 25.93 SS G_CDS: -5.08 Total: 20.85 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -31.54 -7.96 -39.50 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205664879.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.690 kcal (2) G-P(sol) polarization free energy of solvation -31.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds