Wall clock time and date at job start Sun Mar 29 2020 21:45:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 119.99772 * 2 1 4 4 H 1.48506 * 109.47297 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47261 * 60.00248 * 3 2 1 6 6 H 1.48500 * 109.47454 * 300.00241 * 3 2 1 7 7 C 1.37875 * 120.00380 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00559 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99838 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47207 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.46852 * 179.97438 * 10 9 7 12 12 O 1.42903 * 109.46430 * 180.02562 * 11 10 9 13 13 C 1.42904 * 113.99687 * 180.02562 * 12 11 10 14 14 H 1.09002 * 109.35625 * 30.26976 * 13 12 11 15 15 C 1.50075 * 109.35577 * 270.69050 * 13 12 11 16 16 C 1.29441 * 124.07474 * 222.66205 * 15 13 12 17 17 C 1.50067 * 124.07569 * 0.46528 * 16 15 13 18 18 C 1.53022 * 110.14900 * 342.87247 * 17 16 15 19 19 C 1.53019 * 109.35897 * 150.00082 * 13 12 11 20 20 H 0.97001 * 119.99667 * 180.02562 * 1 2 3 21 21 H 1.09005 * 109.46894 * 300.00433 * 9 7 2 22 22 H 1.08998 * 109.47107 * 60.00164 * 9 7 2 23 23 H 1.08993 * 109.47110 * 300.00135 * 10 9 7 24 24 H 1.09006 * 109.46692 * 60.00091 * 10 9 7 25 25 H 1.08999 * 109.47147 * 299.99896 * 11 10 9 26 26 H 1.08998 * 109.47134 * 60.00300 * 11 10 9 27 27 H 1.07998 * 117.96217 * 42.63433 * 15 13 12 28 28 H 1.08005 * 117.96482 * 180.48713 * 16 15 13 29 29 H 1.09000 * 109.36307 * 222.66206 * 17 16 15 30 30 H 1.09000 * 109.24942 * 103.00626 * 17 16 15 31 31 H 1.09000 * 109.63794 * 289.75131 * 18 17 16 32 32 H 1.08998 * 109.82075 * 169.22107 * 18 17 16 33 33 H 1.09004 * 109.64225 * 289.32275 * 19 13 12 34 34 H 1.08993 * 109.64384 * 49.95779 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 1.2125 6 1 1.8903 2.3965 -1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4804 -4.9871 0.0001 12 8 2.4091 -6.0731 0.0007 13 6 1.7946 -7.3633 0.0008 14 1 0.8375 -7.3077 -0.5180 15 6 1.5647 -7.8047 1.4166 16 6 1.7927 -9.0034 1.8486 17 6 2.3280 -10.1167 0.9965 18 6 2.1605 -9.7735 -0.4853 19 6 2.7055 -8.3591 -0.7205 20 1 -0.4850 -0.8401 0.0004 21 1 0.6247 -2.5570 0.8897 22 1 0.6242 -2.5567 -0.8903 23 1 2.8720 -3.6043 -0.8904 24 1 2.8720 -3.6042 0.8895 25 1 0.8540 -5.0445 0.8903 26 1 0.8535 -5.0451 -0.8896 27 1 1.1860 -7.0768 2.1188 28 1 1.5843 -9.2158 2.8869 29 1 1.7845 -11.0351 1.2184 30 1 3.3858 -10.2608 1.2165 31 1 1.1042 -9.8083 -0.7522 32 1 2.7160 -10.4862 -1.0948 33 1 2.7125 -8.1420 -1.7887 34 1 3.7172 -8.2853 -0.3218 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205664879.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:38 Heat of formation + Delta-G solvation = -84.177428 kcal Electronic energy + Delta-G solvation = -13444.951375 eV Core-core repulsion = 11148.006969 eV Total energy + Delta-G solvation = -2296.944405 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.136 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.22478 -37.85229 -36.14913 -33.50809 -32.04647 -30.55214 -28.07055 -25.00587 -23.79244 -23.27966 -22.30303 -19.05232 -19.02555 -17.85182 -17.01728 -16.71324 -15.75026 -15.65805 -15.08711 -14.97877 -14.26059 -13.90511 -13.76389 -13.60344 -13.59121 -12.96896 -12.66640 -12.41081 -12.06040 -11.99013 -11.89919 -11.85560 -11.54859 -11.43362 -10.73100 -10.57476 -10.48169 -10.03053 -8.73068 -6.43465 1.20605 1.51948 1.61815 1.79154 2.53794 2.75205 3.12600 3.69082 3.78121 3.97606 4.02767 4.15450 4.21480 4.33385 4.37428 4.43832 4.55563 4.68162 4.71993 4.74540 4.91331 4.93704 4.98559 5.07007 5.26452 5.31312 5.35411 5.42937 5.63393 5.89195 5.94695 6.14369 6.24642 6.54393 7.38349 8.68316 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.084588 B = 0.004639 C = 0.004587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 330.938026 B = 6034.012968 C = 6103.197433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.038 4.038 3 Si 1.125 2.875 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.622 4.622 8 H 0.050 0.950 9 C 0.011 3.989 10 C -0.090 4.090 11 C 0.074 3.926 12 O -0.396 6.396 13 C 0.109 3.891 14 H 0.067 0.933 15 C -0.204 4.204 16 C -0.132 4.132 17 C -0.095 4.095 18 C -0.113 4.113 19 C -0.115 4.115 20 H 0.256 0.744 21 H -0.007 1.007 22 H -0.005 1.005 23 H 0.055 0.945 24 H 0.051 0.949 25 H 0.045 0.955 26 H 0.050 0.950 27 H 0.090 0.910 28 H 0.117 0.883 29 H 0.094 0.906 30 H 0.084 0.916 31 H 0.068 0.932 32 H 0.092 0.908 33 H 0.073 0.927 34 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.015 -20.135 0.463 20.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.236 4.236 3 Si 0.946 3.054 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.201 1.201 7 C -0.660 4.660 8 H 0.068 0.932 9 C -0.026 4.026 10 C -0.128 4.128 11 C -0.003 4.003 12 O -0.316 6.316 13 C 0.052 3.948 14 H 0.085 0.915 15 C -0.223 4.223 16 C -0.150 4.150 17 C -0.132 4.132 18 C -0.150 4.150 19 C -0.153 4.153 20 H 0.065 0.935 21 H 0.012 0.988 22 H 0.013 0.987 23 H 0.073 0.927 24 H 0.070 0.930 25 H 0.063 0.937 26 H 0.068 0.932 27 H 0.109 0.891 28 H 0.135 0.865 29 H 0.113 0.887 30 H 0.103 0.897 31 H 0.086 0.914 32 H 0.111 0.889 33 H 0.092 0.908 34 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 4.022 -18.496 0.466 18.934 hybrid contribution -0.490 -1.357 0.232 1.462 sum 3.532 -19.854 0.699 20.178 Atomic orbital electron populations 1.70863 1.07889 1.29920 1.48739 1.27516 0.96628 1.06932 0.92478 0.82839 0.74142 0.70698 0.77735 1.19565 1.20172 1.20116 1.22517 0.94756 0.93346 1.55375 0.93190 1.19109 0.94932 0.93967 0.94604 1.21274 0.98363 0.91913 1.01261 1.22499 0.91749 0.86248 0.99780 1.87930 1.34351 1.14177 1.95128 1.21109 0.96858 0.83080 0.93736 0.91523 1.22556 1.03825 0.98067 0.97802 1.22364 0.97567 0.94550 1.00540 1.20604 1.01975 0.96973 0.93616 1.21617 1.01930 0.94786 0.96712 1.21683 0.99111 0.94270 1.00214 0.93457 0.98845 0.98650 0.92669 0.92992 0.93716 0.93168 0.89140 0.86530 0.88720 0.89749 0.91372 0.88903 0.90823 0.91492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.25 13.65 21.45 0.29 -58.96 16 2 C -0.04 -2.28 5.46 84.65 0.46 -1.82 16 3 Si 1.13 51.50 29.90 68.60 2.05 53.55 16 4 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 5 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 6 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 7 C -0.62 -37.12 9.11 25.60 0.23 -36.88 16 8 H 0.05 2.93 7.74 -2.91 -0.02 2.90 16 9 C 0.01 0.60 4.28 29.85 0.13 0.73 16 10 C -0.09 -4.11 5.52 30.60 0.17 -3.94 16 11 C 0.07 2.80 5.73 71.98 0.41 3.21 16 12 O -0.40 -14.12 9.96 -148.98 -1.48 -15.60 16 13 C 0.11 3.03 2.86 29.66 0.08 3.11 16 14 H 0.07 1.78 7.78 -2.39 -0.02 1.76 16 15 C -0.20 -5.29 9.36 27.04 0.25 -5.03 16 16 C -0.13 -2.65 9.80 27.04 0.27 -2.38 16 17 C -0.10 -1.40 6.11 29.66 0.18 -1.22 16 18 C -0.11 -1.75 6.01 30.74 0.18 -1.56 16 19 C -0.12 -2.53 5.66 30.73 0.17 -2.35 16 20 H 0.26 16.35 7.22 -92.71 -0.67 15.68 16 21 H -0.01 -0.38 8.01 -2.38 -0.02 -0.40 16 22 H 0.00 -0.27 8.01 -2.39 -0.02 -0.29 16 23 H 0.05 2.50 8.14 -2.39 -0.02 2.48 16 24 H 0.05 2.38 8.14 -2.38 -0.02 2.36 16 25 H 0.04 1.66 8.13 -2.39 -0.02 1.64 16 26 H 0.05 1.82 8.08 -2.39 -0.02 1.80 16 27 H 0.09 2.55 8.05 -2.91 -0.02 2.53 16 28 H 0.12 1.99 8.06 -2.91 -0.02 1.97 16 29 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.07 1.03 8.12 -2.39 -0.02 1.01 16 32 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.07 1.55 8.14 -2.38 -0.02 1.53 16 34 H 0.07 1.56 8.12 -2.39 -0.02 1.54 16 Total: -1.00 -67.59 280.93 4.54 -63.05 By element: Atomic # 1 Polarization: 4.96 SS G_CDS: 1.13 Total: 6.09 kcal Atomic # 6 Polarization: -50.69 SS G_CDS: 2.55 Total: -48.15 kcal Atomic # 7 Polarization: -59.25 SS G_CDS: 0.29 Total: -58.96 kcal Atomic # 8 Polarization: -14.12 SS G_CDS: -1.48 Total: -15.60 kcal Atomic # 14 Polarization: 51.50 SS G_CDS: 2.05 Total: 53.55 kcal Total: -67.59 4.54 -63.05 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205664879.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.125 kcal (2) G-P(sol) polarization free energy of solvation -67.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds