Wall clock time and date at job start Sun Mar 29 2020 21:45:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86799 * 120.00367 * 2 1 4 4 H 1.48504 * 109.47259 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46992 * 300.00025 * 3 2 1 6 6 H 1.48500 * 109.47000 * 59.99733 * 3 2 1 7 7 C 1.37884 * 119.99791 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99709 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99721 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47156 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47578 * 179.97438 * 10 9 7 12 12 O 1.42900 * 109.47367 * 180.02562 * 11 10 9 13 13 C 1.42891 * 114.00036 * 180.02562 * 12 11 10 14 14 H 1.08999 * 109.24535 * 329.65574 * 13 12 11 15 15 C 1.50172 * 109.56077 * 89.24735 * 13 12 11 16 16 C 1.29440 * 124.14460 * 137.01989 * 15 13 12 17 17 C 1.50068 * 124.08015 * 359.75709 * 16 15 13 18 18 C 1.53028 * 110.14332 * 17.13513 * 17 16 15 19 19 C 1.53025 * 109.35971 * 209.99809 * 13 12 11 20 20 H 0.97004 * 119.99631 * 359.97438 * 1 2 3 21 21 H 1.08997 * 109.47215 * 60.00106 * 9 7 2 22 22 H 1.08999 * 109.47103 * 299.99516 * 9 7 2 23 23 H 1.09002 * 109.46717 * 59.99810 * 10 9 7 24 24 H 1.08997 * 109.47400 * 300.00760 * 10 9 7 25 25 H 1.09004 * 109.46613 * 60.00003 * 11 10 9 26 26 H 1.08999 * 109.47070 * 300.00296 * 11 10 9 27 27 H 1.07990 * 117.89035 * 317.22612 * 15 13 12 28 28 H 1.08006 * 117.96034 * 179.73940 * 16 15 13 29 29 H 1.09000 * 109.35920 * 256.92754 * 17 16 15 30 30 H 1.09006 * 109.35943 * 137.34052 * 17 16 15 31 31 H 1.09000 * 109.63704 * 190.87646 * 18 17 16 32 32 H 1.09000 * 109.64344 * 70.24823 * 18 17 16 33 33 H 1.09002 * 109.64203 * 70.67028 * 19 13 12 34 34 H 1.09002 * 109.64069 * 310.25411 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2509 -2.4991 0.0005 10 6 2.2450 -3.6622 0.0005 11 6 1.4800 -4.9872 0.0012 12 8 2.4086 -6.0734 0.0018 13 6 1.7940 -7.3633 0.0018 14 1 0.8375 -7.3056 0.5213 15 6 1.5615 -7.8096 -1.4131 16 6 1.7937 -9.0077 -1.8445 17 6 2.3332 -10.1186 -0.9919 18 6 2.1644 -9.7754 0.4898 19 6 2.7043 -8.3589 0.7242 20 1 -0.4850 0.8401 0.0004 21 1 0.6246 -2.5570 -0.8897 22 1 0.6239 -2.5567 0.8903 23 1 2.8717 -3.6044 0.8905 24 1 2.8718 -3.6045 -0.8893 25 1 0.8531 -5.0451 -0.8886 26 1 0.8537 -5.0446 0.8914 27 1 1.1795 -7.0836 -2.1154 28 1 1.5860 -9.2212 -2.8827 29 1 3.3913 -10.2614 -1.2115 30 1 1.7929 -11.0391 -1.2134 31 1 2.7250 -10.4863 1.0967 32 1 1.1083 -9.8138 0.7568 33 1 2.7106 -8.1413 1.7923 34 1 3.7172 -8.2828 0.3288 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205664880.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:40 Heat of formation + Delta-G solvation = -62.197716 kcal Electronic energy + Delta-G solvation = -13412.131873 eV Core-core repulsion = 11116.140579 eV Total energy + Delta-G solvation = -2295.991294 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.136 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.06576 -36.53706 -33.78953 -31.58952 -31.12100 -29.45488 -26.51277 -23.25038 -22.64845 -22.22199 -20.14299 -18.04078 -16.78536 -16.37063 -15.68754 -15.13697 -14.49731 -14.41773 -13.51935 -13.37930 -12.86757 -12.79712 -12.36590 -12.02101 -11.82991 -11.64148 -11.13706 -10.93583 -10.72793 -10.54621 -10.48350 -10.35096 -9.78298 -9.41395 -9.17523 -9.06977 -9.00441 -8.34395 -5.99472 -4.01455 2.20103 3.32645 3.39830 3.44892 4.07358 4.48593 4.61920 4.69035 4.95716 5.18483 5.21897 5.33548 5.36691 5.42242 5.57657 5.69779 5.73386 5.77581 5.85877 5.92069 6.18734 6.20110 6.23621 6.58499 6.72098 6.75038 6.87954 7.12304 7.63046 7.69654 7.80801 8.00476 8.43728 9.05529 9.62590 11.12186 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.084736 B = 0.004618 C = 0.004566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 330.357494 B = 6061.155516 C = 6131.059848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.518 4.518 8 H 0.057 0.943 9 C 0.023 3.977 10 C -0.108 4.108 11 C 0.061 3.939 12 O -0.380 6.380 13 C 0.117 3.883 14 H 0.066 0.934 15 C -0.168 4.168 16 C -0.154 4.154 17 C -0.092 4.092 18 C -0.117 4.117 19 C -0.116 4.116 20 H 0.260 0.740 21 H 0.017 0.983 22 H 0.017 0.983 23 H 0.055 0.945 24 H 0.055 0.945 25 H 0.043 0.957 26 H 0.044 0.956 27 H 0.106 0.894 28 H 0.102 0.898 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.657 -18.476 -0.474 18.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.557 4.557 8 H 0.075 0.925 9 C -0.014 4.014 10 C -0.145 4.145 11 C -0.015 4.015 12 O -0.299 6.299 13 C 0.059 3.941 14 H 0.083 0.917 15 C -0.186 4.186 16 C -0.172 4.172 17 C -0.129 4.129 18 C -0.155 4.155 19 C -0.154 4.154 20 H 0.069 0.931 21 H 0.035 0.965 22 H 0.035 0.965 23 H 0.074 0.926 24 H 0.074 0.926 25 H 0.061 0.939 26 H 0.062 0.938 27 H 0.124 0.876 28 H 0.120 0.880 29 H 0.092 0.908 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.706 -18.323 -0.478 18.528 hybrid contribution -0.004 1.011 -0.198 1.031 sum 2.702 -17.312 -0.676 17.534 Atomic orbital electron populations 1.69976 1.06085 1.26510 1.51047 1.25030 0.94864 0.99319 0.95314 0.86512 0.80162 0.83647 0.77556 1.19670 1.21005 1.21001 1.21270 0.93185 0.90858 1.50353 0.92463 1.19057 0.93942 0.91121 0.97318 1.21650 0.99629 0.91760 1.01482 1.22842 0.92232 0.87068 0.99371 1.87978 1.34104 1.12949 1.94906 1.20819 0.96233 0.84544 0.92514 0.91667 1.22691 1.00439 0.97075 0.98384 1.22003 1.00719 0.94980 0.99536 1.20478 1.01100 0.97030 0.94274 1.21598 1.01514 0.96284 0.96107 1.21633 1.00000 0.93240 1.00493 0.93054 0.96508 0.96473 0.92598 0.92623 0.93909 0.93819 0.87600 0.87968 0.90841 0.91220 0.91228 0.91663 0.91120 0.90783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.28 13.29 55.43 0.74 -26.54 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.96 29.54 -169.99 -5.02 16.94 16 4 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 7 C -0.52 -15.05 9.11 -34.44 -0.31 -15.36 16 8 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16 9 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 10 C -0.11 -2.38 5.52 -26.73 -0.15 -2.53 16 11 C 0.06 1.15 5.73 37.16 0.21 1.36 16 12 O -0.38 -6.76 9.97 -35.23 -0.35 -7.11 16 13 C 0.12 1.65 2.87 -28.13 -0.08 1.57 16 14 H 0.07 0.89 7.78 -51.93 -0.40 0.48 16 15 C -0.17 -2.23 9.38 -35.85 -0.34 -2.56 16 16 C -0.15 -1.72 9.80 -35.90 -0.35 -2.07 16 17 C -0.09 -0.84 6.12 -28.17 -0.17 -1.01 16 18 C -0.12 -1.09 6.01 -26.51 -0.16 -1.25 16 19 C -0.12 -1.37 5.64 -26.52 -0.15 -1.52 16 20 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 21 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 22 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 23 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 24 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 25 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.04 0.79 8.08 -51.93 -0.42 0.37 16 27 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 28 H 0.10 1.00 8.06 -52.48 -0.42 0.58 16 29 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.59 8.13 -51.93 -0.42 0.17 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.07 0.91 8.13 -51.93 -0.42 0.49 16 LS Contribution 282.28 15.07 4.25 4.25 Total: -1.00 -30.69 282.28 -7.98 -38.66 By element: Atomic # 1 Polarization: 1.03 SS G_CDS: -5.86 Total: -4.83 kcal Atomic # 6 Polarization: -19.64 SS G_CDS: -1.73 Total: -21.37 kcal Atomic # 7 Polarization: -27.28 SS G_CDS: 0.74 Total: -26.54 kcal Atomic # 8 Polarization: -6.76 SS G_CDS: -0.35 Total: -7.11 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -30.69 -7.98 -38.66 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205664880.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.536 kcal (2) G-P(sol) polarization free energy of solvation -30.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds