Wall clock time and date at job start Sun Mar 29 2020 21:45:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86799 * 120.00367 * 2 1 4 4 H 1.48504 * 109.47259 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46992 * 300.00025 * 3 2 1 6 6 H 1.48500 * 109.47000 * 59.99733 * 3 2 1 7 7 C 1.37884 * 119.99791 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99709 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99721 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47156 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47578 * 179.97438 * 10 9 7 12 12 O 1.42900 * 109.47367 * 180.02562 * 11 10 9 13 13 C 1.42891 * 114.00036 * 180.02562 * 12 11 10 14 14 H 1.08999 * 109.24535 * 329.65574 * 13 12 11 15 15 C 1.50172 * 109.56077 * 89.24735 * 13 12 11 16 16 C 1.29440 * 124.14460 * 137.01989 * 15 13 12 17 17 C 1.50068 * 124.08015 * 359.75709 * 16 15 13 18 18 C 1.53028 * 110.14332 * 17.13513 * 17 16 15 19 19 C 1.53025 * 109.35971 * 209.99809 * 13 12 11 20 20 H 0.97004 * 119.99631 * 359.97438 * 1 2 3 21 21 H 1.08997 * 109.47215 * 60.00106 * 9 7 2 22 22 H 1.08999 * 109.47103 * 299.99516 * 9 7 2 23 23 H 1.09002 * 109.46717 * 59.99810 * 10 9 7 24 24 H 1.08997 * 109.47400 * 300.00760 * 10 9 7 25 25 H 1.09004 * 109.46613 * 60.00003 * 11 10 9 26 26 H 1.08999 * 109.47070 * 300.00296 * 11 10 9 27 27 H 1.07990 * 117.89035 * 317.22612 * 15 13 12 28 28 H 1.08006 * 117.96034 * 179.73940 * 16 15 13 29 29 H 1.09000 * 109.35920 * 256.92754 * 17 16 15 30 30 H 1.09006 * 109.35943 * 137.34052 * 17 16 15 31 31 H 1.09000 * 109.63704 * 190.87646 * 18 17 16 32 32 H 1.09000 * 109.64344 * 70.24823 * 18 17 16 33 33 H 1.09002 * 109.64203 * 70.67028 * 19 13 12 34 34 H 1.09002 * 109.64069 * 310.25411 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2509 -2.4991 0.0005 10 6 2.2450 -3.6622 0.0005 11 6 1.4800 -4.9872 0.0012 12 8 2.4086 -6.0734 0.0018 13 6 1.7940 -7.3633 0.0018 14 1 0.8375 -7.3056 0.5213 15 6 1.5615 -7.8096 -1.4131 16 6 1.7937 -9.0077 -1.8445 17 6 2.3332 -10.1186 -0.9919 18 6 2.1644 -9.7754 0.4898 19 6 2.7043 -8.3589 0.7242 20 1 -0.4850 0.8401 0.0004 21 1 0.6246 -2.5570 -0.8897 22 1 0.6239 -2.5567 0.8903 23 1 2.8717 -3.6044 0.8905 24 1 2.8718 -3.6045 -0.8893 25 1 0.8531 -5.0451 -0.8886 26 1 0.8537 -5.0446 0.8914 27 1 1.1795 -7.0836 -2.1154 28 1 1.5860 -9.2212 -2.8827 29 1 3.3913 -10.2614 -1.2115 30 1 1.7929 -11.0391 -1.2134 31 1 2.7250 -10.4863 1.0967 32 1 1.1083 -9.8138 0.7568 33 1 2.7106 -8.1413 1.7923 34 1 3.7172 -8.2828 0.3288 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205664880.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:40 Heat of formation + Delta-G solvation = -79.426567 kcal Electronic energy + Delta-G solvation = -13412.878972 eV Core-core repulsion = 11116.140579 eV Total energy + Delta-G solvation = -2296.738393 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.136 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.15502 -37.75886 -35.79349 -33.54379 -32.00679 -30.56808 -28.41580 -24.99760 -23.74247 -23.19830 -22.00371 -18.98702 -18.60396 -17.82141 -16.95196 -16.60441 -16.44934 -15.50551 -14.90513 -14.59641 -14.25192 -13.75861 -13.70708 -13.58521 -13.42120 -13.02921 -12.81550 -12.45537 -12.25178 -11.98823 -11.82816 -11.63255 -11.43140 -11.35956 -11.16810 -10.58258 -10.41255 -9.98992 -8.22658 -6.33920 1.24859 1.40159 1.40461 1.54482 2.39702 2.82912 3.10766 3.73177 3.82829 4.04918 4.13652 4.23037 4.26612 4.40248 4.42609 4.56517 4.59917 4.75615 4.87221 4.89090 4.98090 5.01807 5.10500 5.14780 5.30860 5.37751 5.47598 5.66906 5.67566 5.80450 5.93739 6.18301 6.34246 6.81750 7.35433 8.89770 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.084736 B = 0.004618 C = 0.004566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 330.357494 B = 6061.155516 C = 6131.059848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.000 4.000 3 Si 0.969 3.031 4 H -0.263 1.263 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.546 4.546 8 H 0.059 0.941 9 C 0.027 3.973 10 C -0.096 4.096 11 C 0.073 3.927 12 O -0.396 6.396 13 C 0.109 3.891 14 H 0.066 0.934 15 C -0.203 4.203 16 C -0.133 4.133 17 C -0.095 4.095 18 C -0.113 4.113 19 C -0.115 4.115 20 H 0.265 0.735 21 H -0.004 1.004 22 H -0.002 1.002 23 H 0.055 0.945 24 H 0.052 0.948 25 H 0.044 0.956 26 H 0.049 0.951 27 H 0.091 0.909 28 H 0.116 0.884 29 H 0.084 0.916 30 H 0.094 0.906 31 H 0.092 0.908 32 H 0.068 0.932 33 H 0.073 0.927 34 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.586 -19.628 -0.450 19.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.197 4.197 3 Si 0.793 3.207 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.201 1.201 7 C -0.584 4.584 8 H 0.077 0.923 9 C -0.010 4.010 10 C -0.134 4.134 11 C -0.003 4.003 12 O -0.316 6.316 13 C 0.052 3.948 14 H 0.084 0.916 15 C -0.221 4.221 16 C -0.152 4.152 17 C -0.132 4.132 18 C -0.150 4.150 19 C -0.153 4.153 20 H 0.074 0.926 21 H 0.014 0.986 22 H 0.016 0.984 23 H 0.074 0.926 24 H 0.071 0.929 25 H 0.062 0.938 26 H 0.067 0.933 27 H 0.109 0.891 28 H 0.134 0.866 29 H 0.102 0.898 30 H 0.112 0.888 31 H 0.110 0.890 32 H 0.086 0.914 33 H 0.091 0.909 34 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.640 -19.497 -0.454 19.839 hybrid contribution -0.311 1.275 -0.233 1.333 sum 3.329 -18.223 -0.687 18.537 Atomic orbital electron populations 1.70096 1.07793 1.27866 1.51527 1.25992 0.95824 1.03418 0.94510 0.85347 0.78979 0.78474 0.77936 1.18710 1.20172 1.20113 1.21680 0.93579 0.92242 1.50861 0.92258 1.18933 0.94229 0.92554 0.95285 1.21397 0.98609 0.92152 1.01218 1.22514 0.91768 0.86292 0.99739 1.87922 1.34430 1.14133 1.95111 1.21096 0.96822 0.83205 0.93672 0.91592 1.22582 1.03625 0.98034 0.97861 1.22348 0.97730 0.94583 1.00496 1.20602 1.01922 0.96986 0.93660 1.21615 1.01927 0.94788 0.96696 1.21672 0.99128 0.94255 1.00221 0.92622 0.98590 0.98396 0.92641 0.92947 0.93785 0.93257 0.89099 0.86575 0.89792 0.88807 0.88957 0.91365 0.90856 0.91525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.45 13.29 21.45 0.28 -57.16 16 2 C 0.00 0.02 5.46 84.66 0.46 0.48 16 3 Si 0.97 44.99 29.54 68.60 2.03 47.02 16 4 H -0.26 -11.73 7.11 99.48 0.71 -11.03 16 5 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 6 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 7 C -0.55 -32.14 9.11 25.60 0.23 -31.90 16 8 H 0.06 3.38 7.74 -2.91 -0.02 3.36 16 9 C 0.03 1.49 4.97 29.85 0.15 1.64 16 10 C -0.10 -4.34 5.52 30.59 0.17 -4.17 16 11 C 0.07 2.80 5.73 71.98 0.41 3.21 16 12 O -0.40 -14.16 9.97 -148.98 -1.49 -15.65 16 13 C 0.11 3.05 2.87 29.69 0.09 3.14 16 14 H 0.07 1.78 7.78 -2.39 -0.02 1.76 16 15 C -0.20 -5.29 9.38 27.07 0.25 -5.04 16 16 C -0.13 -2.71 9.80 27.04 0.27 -2.44 16 17 C -0.10 -1.43 6.12 29.66 0.18 -1.24 16 18 C -0.11 -1.77 6.01 30.73 0.18 -1.58 16 19 C -0.12 -2.55 5.64 30.73 0.17 -2.38 16 20 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 21 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 22 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 23 H 0.05 2.47 8.14 -2.39 -0.02 2.45 16 24 H 0.05 2.36 8.14 -2.39 -0.02 2.34 16 25 H 0.04 1.65 8.14 -2.38 -0.02 1.63 16 26 H 0.05 1.81 8.08 -2.39 -0.02 1.79 16 27 H 0.09 2.58 8.06 -2.92 -0.02 2.56 16 28 H 0.12 2.01 8.06 -2.91 -0.02 1.99 16 29 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.09 1.03 8.14 -2.38 -0.02 1.01 16 31 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.07 1.05 8.13 -2.39 -0.02 1.03 16 33 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.07 1.56 8.13 -2.39 -0.02 1.54 16 Total: -1.00 -65.72 282.28 4.42 -61.30 By element: Atomic # 1 Polarization: 3.76 SS G_CDS: 1.03 Total: 4.79 kcal Atomic # 6 Polarization: -42.86 SS G_CDS: 2.57 Total: -40.29 kcal Atomic # 7 Polarization: -57.45 SS G_CDS: 0.28 Total: -57.16 kcal Atomic # 8 Polarization: -14.16 SS G_CDS: -1.49 Total: -15.65 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Total: -65.72 4.42 -61.30 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205664880.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.131 kcal (2) G-P(sol) polarization free energy of solvation -65.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds