Wall clock time and date at job start Sun Mar 29 2020 21:29:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99650 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99643 * 3 2 1 7 7 C 1.37875 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47184 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47127 * 179.97438 * 10 9 7 12 12 O 1.42895 * 109.47269 * 179.97438 * 11 10 9 13 13 C 1.42893 * 114.00279 * 179.97438 * 12 11 10 14 14 H 1.09002 * 110.20482 * 329.56514 * 13 12 11 15 15 C 1.50818 * 110.23243 * 91.45345 * 13 12 11 16 16 C 1.32530 * 110.52160 * 119.02119 * 15 13 12 17 17 C 1.45875 * 112.27651 * 0.02562 * 16 15 13 18 18 O 1.21331 * 126.24143 * 179.97438 * 17 16 15 19 19 C 1.51379 * 107.51434 * 0.02562 * 17 16 15 20 20 H 0.97001 * 119.99934 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.46665 * 299.99501 * 9 7 2 22 22 H 1.08993 * 109.47304 * 59.99945 * 9 7 2 23 23 H 1.09001 * 109.47002 * 299.99404 * 10 9 7 24 24 H 1.09001 * 109.46801 * 59.99558 * 10 9 7 25 25 H 1.09001 * 109.46832 * 299.99679 * 11 10 9 26 26 H 1.09004 * 109.47261 * 59.99697 * 11 10 9 27 27 H 1.07996 * 124.73983 * 299.06026 * 15 13 12 28 28 H 1.07993 * 123.86232 * 180.02562 * 16 15 13 29 29 H 1.09006 * 110.49665 * 241.33805 * 19 17 16 30 30 H 1.08998 * 110.49991 * 118.66161 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1029 1.6964 -1.2125 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4805 -4.9871 0.0012 12 8 2.4090 -6.0732 0.0006 13 6 1.7946 -7.3633 0.0017 14 1 0.8370 -7.3237 0.5209 15 6 1.6012 -7.8501 -1.4126 16 6 2.2737 -8.9744 -1.6130 17 6 2.9951 -9.4071 -0.4212 18 8 3.6878 -10.3983 -0.3225 19 6 2.7206 -8.3947 0.6702 20 1 -0.4850 -0.8401 -0.0004 21 1 0.6242 -2.5567 0.8904 22 1 0.6248 -2.5571 -0.8896 23 1 2.8720 -3.6043 -0.8895 24 1 2.8721 -3.6042 0.8905 25 1 0.8542 -5.0446 0.8914 26 1 0.8534 -5.0451 -0.8886 27 1 0.9993 -7.3518 -2.1581 28 1 2.2863 -9.5089 -2.5512 29 1 3.6477 -7.9210 0.9933 30 1 2.2191 -8.8692 1.5137 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205672110.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:29:38 Heat of formation + Delta-G solvation = -81.870121 kcal Electronic energy + Delta-G solvation = -13025.055480 eV Core-core repulsion = 10592.378033 eV Total energy + Delta-G solvation = -2432.677448 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.104 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.25683 -38.13148 -35.66035 -34.04018 -31.48918 -29.38726 -26.61315 -25.62103 -22.95743 -20.98234 -20.51200 -19.38177 -17.23793 -16.92378 -16.44222 -15.37754 -14.87364 -14.67413 -14.16549 -13.73568 -13.42652 -13.20694 -12.72705 -12.54364 -11.94021 -11.75925 -11.42096 -10.81688 -10.76528 -10.16122 -10.12883 -9.98074 -9.85375 -9.81954 -9.46767 -8.61031 -8.36399 -6.40161 -4.09495 0.73872 2.58639 3.43085 3.44847 3.63520 3.72148 3.90019 4.20397 4.52402 4.61643 4.76489 5.02091 5.32283 5.34066 5.37142 5.50544 5.57043 5.73697 5.80741 5.94477 6.02259 6.45555 6.45811 6.84950 7.22257 7.29216 7.35304 7.44470 8.16805 8.42475 8.84376 9.62606 11.00598 Molecular weight = 210.10amu Principal moments of inertia in cm(-1) A = 0.087102 B = 0.004608 C = 0.004529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 321.383887 B = 6075.564268 C = 6180.574057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.015 3.985 3 Si 1.070 2.930 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.287 1.287 7 C -0.602 4.602 8 H 0.050 0.950 9 C 0.011 3.989 10 C -0.102 4.102 11 C 0.058 3.942 12 O -0.370 6.370 13 C 0.096 3.904 14 H 0.088 0.912 15 C -0.084 4.084 16 C -0.239 4.239 17 C 0.392 3.608 18 O -0.451 6.451 19 C -0.179 4.179 20 H 0.268 0.732 21 H 0.008 0.992 22 H 0.008 0.992 23 H 0.058 0.942 24 H 0.059 0.941 25 H 0.048 0.952 26 H 0.046 0.954 27 H 0.148 0.852 28 H 0.142 0.858 29 H 0.121 0.879 30 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.353 -14.778 -0.806 14.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.189 4.189 3 Si 0.898 3.102 4 H -0.207 1.207 5 H -0.214 1.214 6 H -0.214 1.214 7 C -0.640 4.640 8 H 0.069 0.931 9 C -0.027 4.027 10 C -0.140 4.140 11 C -0.018 4.018 12 O -0.289 6.289 13 C 0.038 3.962 14 H 0.106 0.894 15 C -0.103 4.103 16 C -0.258 4.258 17 C 0.270 3.730 18 O -0.327 6.327 19 C -0.217 4.217 20 H 0.078 0.922 21 H 0.027 0.973 22 H 0.026 0.974 23 H 0.077 0.923 24 H 0.077 0.923 25 H 0.066 0.934 26 H 0.065 0.935 27 H 0.165 0.835 28 H 0.160 0.840 29 H 0.139 0.861 30 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 1.722 -13.610 -0.738 13.738 hybrid contribution -0.219 -1.624 -0.173 1.648 sum 1.503 -15.234 -0.911 15.335 Atomic orbital electron populations 1.70797 1.06895 1.30518 1.46714 1.25878 0.96533 1.02800 0.93676 0.83532 0.74882 0.75220 0.76593 1.20746 1.21395 1.21382 1.22026 0.94419 0.91827 1.55777 0.93150 1.19178 0.94535 0.92864 0.96076 1.21531 0.99430 0.91071 1.01930 1.22942 0.92237 0.86891 0.99733 1.88060 1.33762 1.12382 1.94724 1.21619 0.96867 0.85258 0.92461 0.89410 1.24792 0.93231 0.93940 0.98340 1.23499 1.01472 1.00110 1.00702 1.22767 0.76892 0.83963 0.89335 1.90561 1.32183 1.25607 1.84308 1.22652 1.03280 0.96470 0.99273 0.92190 0.97340 0.97365 0.92292 0.92266 0.93366 0.93524 0.83486 0.84045 0.86125 0.86905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.74 13.65 55.43 0.76 -26.98 16 2 C 0.01 0.42 5.46 -17.82 -0.10 0.33 16 3 Si 1.07 25.13 29.90 -169.99 -5.08 20.05 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.60 -17.12 9.11 -34.44 -0.31 -17.44 16 8 H 0.05 1.41 7.74 -52.48 -0.41 1.01 16 9 C 0.01 0.26 4.28 -27.88 -0.12 0.14 16 10 C -0.10 -2.09 5.52 -26.73 -0.15 -2.24 16 11 C 0.06 0.94 5.78 37.16 0.21 1.15 16 12 O -0.37 -5.53 9.95 -35.23 -0.35 -5.89 16 13 C 0.10 1.06 3.44 -27.36 -0.09 0.97 16 14 H 0.09 0.82 7.84 -51.93 -0.41 0.41 16 15 C -0.08 -0.83 10.58 -36.16 -0.38 -1.22 16 16 C -0.24 -2.43 10.62 -38.44 -0.41 -2.84 16 17 C 0.39 4.66 7.77 -30.92 -0.24 4.42 16 18 O -0.45 -6.74 18.03 5.51 0.10 -6.64 16 19 C -0.18 -1.84 6.78 -27.08 -0.18 -2.02 16 20 H 0.27 8.04 7.22 -40.82 -0.29 7.75 16 21 H 0.01 0.22 8.01 -51.93 -0.42 -0.20 16 22 H 0.01 0.21 8.01 -51.93 -0.42 -0.21 16 23 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 24 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 25 H 0.05 0.74 8.10 -51.93 -0.42 0.32 16 26 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.15 1.22 8.06 -52.49 -0.42 0.79 16 28 H 0.14 1.23 8.06 -52.49 -0.42 0.80 16 29 H 0.12 1.30 7.98 -51.93 -0.41 0.89 16 30 H 0.11 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 265.79 15.07 4.01 4.01 Total: -1.00 -32.11 265.79 -6.45 -38.56 By element: Atomic # 1 Polarization: -0.26 SS G_CDS: -4.11 Total: -4.37 kcal Atomic # 6 Polarization: -16.97 SS G_CDS: -1.77 Total: -18.74 kcal Atomic # 7 Polarization: -27.74 SS G_CDS: 0.76 Total: -26.98 kcal Atomic # 8 Polarization: -12.27 SS G_CDS: -0.25 Total: -12.52 kcal Atomic # 14 Polarization: 25.13 SS G_CDS: -5.08 Total: 20.05 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -32.11 -6.45 -38.56 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205672110.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.306 kcal (2) G-P(sol) polarization free energy of solvation -32.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds