Wall clock time and date at job start Sun Mar 29 2020 21:29:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99650 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99643 * 3 2 1 7 7 C 1.37875 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47184 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47127 * 179.97438 * 10 9 7 12 12 O 1.42895 * 109.47269 * 179.97438 * 11 10 9 13 13 C 1.42893 * 114.00279 * 179.97438 * 12 11 10 14 14 H 1.09002 * 110.20482 * 329.56514 * 13 12 11 15 15 C 1.50818 * 110.23243 * 91.45345 * 13 12 11 16 16 C 1.32530 * 110.52160 * 119.02119 * 15 13 12 17 17 C 1.45875 * 112.27651 * 0.02562 * 16 15 13 18 18 O 1.21331 * 126.24143 * 179.97438 * 17 16 15 19 19 C 1.51379 * 107.51434 * 0.02562 * 17 16 15 20 20 H 0.97001 * 119.99934 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.46665 * 299.99501 * 9 7 2 22 22 H 1.08993 * 109.47304 * 59.99945 * 9 7 2 23 23 H 1.09001 * 109.47002 * 299.99404 * 10 9 7 24 24 H 1.09001 * 109.46801 * 59.99558 * 10 9 7 25 25 H 1.09001 * 109.46832 * 299.99679 * 11 10 9 26 26 H 1.09004 * 109.47261 * 59.99697 * 11 10 9 27 27 H 1.07996 * 124.73983 * 299.06026 * 15 13 12 28 28 H 1.07993 * 123.86232 * 180.02562 * 16 15 13 29 29 H 1.09006 * 110.49665 * 241.33805 * 19 17 16 30 30 H 1.08998 * 110.49991 * 118.66161 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1029 1.6964 -1.2125 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4805 -4.9871 0.0012 12 8 2.4090 -6.0732 0.0006 13 6 1.7946 -7.3633 0.0017 14 1 0.8370 -7.3237 0.5209 15 6 1.6012 -7.8501 -1.4126 16 6 2.2737 -8.9744 -1.6130 17 6 2.9951 -9.4071 -0.4212 18 8 3.6878 -10.3983 -0.3225 19 6 2.7206 -8.3947 0.6702 20 1 -0.4850 -0.8401 -0.0004 21 1 0.6242 -2.5567 0.8904 22 1 0.6248 -2.5571 -0.8896 23 1 2.8720 -3.6043 -0.8895 24 1 2.8721 -3.6042 0.8905 25 1 0.8542 -5.0446 0.8914 26 1 0.8534 -5.0451 -0.8886 27 1 0.9993 -7.3518 -2.1581 28 1 2.2863 -9.5089 -2.5512 29 1 3.6477 -7.9210 0.9933 30 1 2.2191 -8.8692 1.5137 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205672110.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:29:38 Heat of formation + Delta-G solvation = -101.991132 kcal Electronic energy + Delta-G solvation = -13025.927993 eV Core-core repulsion = 10592.378033 eV Total energy + Delta-G solvation = -2433.549960 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.104 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.18641 -39.22957 -36.89266 -35.82984 -33.30705 -30.26983 -28.24301 -26.71791 -24.85455 -22.40383 -21.67061 -20.25595 -19.01846 -17.95694 -17.71500 -16.65806 -15.92552 -15.83103 -15.62731 -15.33933 -14.84788 -14.53135 -14.13817 -13.72201 -13.35823 -13.09763 -12.64813 -12.53047 -12.23457 -11.98112 -11.81140 -11.78944 -10.92946 -10.73713 -10.66868 -10.55585 -10.53649 -8.68778 -6.39387 -0.11834 1.54493 1.62260 1.71868 1.81984 2.55427 2.68406 3.07330 3.15991 3.37626 3.73234 3.92993 4.09796 4.23157 4.28314 4.49413 4.53144 4.58273 4.79481 4.81471 4.93100 4.98208 5.03992 5.23496 5.39235 5.49679 5.98134 6.14915 6.19517 6.38972 6.59362 7.41492 8.72905 Molecular weight = 210.10amu Principal moments of inertia in cm(-1) A = 0.087102 B = 0.004608 C = 0.004529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 321.383887 B = 6075.564268 C = 6180.574057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.037 4.037 3 Si 1.117 2.883 4 H -0.282 1.282 5 H -0.270 1.270 6 H -0.270 1.270 7 C -0.623 4.623 8 H 0.048 0.952 9 C 0.011 3.989 10 C -0.094 4.094 11 C 0.070 3.930 12 O -0.386 6.386 13 C 0.088 3.912 14 H 0.112 0.888 15 C -0.075 4.075 16 C -0.245 4.245 17 C 0.389 3.611 18 O -0.490 6.490 19 C -0.176 4.176 20 H 0.257 0.743 21 H -0.004 1.004 22 H -0.003 1.003 23 H 0.052 0.948 24 H 0.052 0.948 25 H 0.059 0.941 26 H 0.060 0.940 27 H 0.167 0.833 28 H 0.156 0.844 29 H 0.115 0.885 30 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.453 -14.917 -0.922 15.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.234 4.234 3 Si 0.938 3.062 4 H -0.208 1.208 5 H -0.195 1.195 6 H -0.195 1.195 7 C -0.661 4.661 8 H 0.067 0.933 9 C -0.026 4.026 10 C -0.132 4.132 11 C -0.006 4.006 12 O -0.306 6.306 13 C 0.031 3.969 14 H 0.130 0.870 15 C -0.093 4.093 16 C -0.264 4.264 17 C 0.271 3.729 18 O -0.369 6.369 19 C -0.213 4.213 20 H 0.067 0.933 21 H 0.015 0.985 22 H 0.015 0.985 23 H 0.071 0.929 24 H 0.071 0.929 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.185 0.815 28 H 0.173 0.827 29 H 0.133 0.867 30 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 1.821 -13.774 -0.855 13.920 hybrid contribution -0.261 -1.631 -0.130 1.657 sum 1.560 -15.405 -0.986 15.515 Atomic orbital electron populations 1.70923 1.07864 1.29982 1.48687 1.27395 0.96627 1.06749 0.92658 0.82940 0.74150 0.71154 0.78002 1.20776 1.19499 1.19495 1.22501 0.94737 0.93569 1.55300 0.93323 1.19102 0.94965 0.93752 0.94816 1.21292 0.98426 0.92189 1.01274 1.22618 0.91600 0.85405 1.00985 1.88011 1.34112 1.13472 1.94981 1.21901 0.97892 0.83441 0.93705 0.87003 1.24941 0.92854 0.93550 0.97996 1.23571 1.01419 1.00618 1.00749 1.23155 0.75943 0.83419 0.90410 1.90549 1.34038 1.27288 1.84997 1.22678 1.03205 0.95834 0.99572 0.93330 0.98523 0.98465 0.92932 0.92915 0.92248 0.92175 0.81525 0.82676 0.86731 0.84424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.25 13.65 21.45 0.29 -56.96 16 2 C -0.04 -2.11 5.46 84.65 0.46 -1.65 16 3 Si 1.12 49.74 29.90 68.60 2.05 51.79 16 4 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 5 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 6 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 7 C -0.62 -35.44 9.11 25.60 0.23 -35.20 16 8 H 0.05 2.71 7.74 -2.91 -0.02 2.69 16 9 C 0.01 0.54 4.28 29.85 0.13 0.67 16 10 C -0.09 -3.79 5.52 30.60 0.17 -3.62 16 11 C 0.07 2.12 5.78 71.98 0.42 2.54 16 12 O -0.39 -10.67 9.95 -148.98 -1.48 -12.16 16 13 C 0.09 1.70 3.44 30.19 0.10 1.80 16 14 H 0.11 1.67 7.84 -2.39 -0.02 1.66 16 15 C -0.07 -1.27 10.58 24.58 0.26 -1.01 16 16 C -0.24 -4.48 10.62 23.10 0.25 -4.24 16 17 C 0.39 8.77 7.77 27.88 0.22 8.99 16 18 O -0.49 -14.49 18.03 -3.19 -0.06 -14.55 16 19 C -0.18 -3.25 6.78 30.37 0.21 -3.04 16 20 H 0.26 15.72 7.22 -92.71 -0.67 15.05 16 21 H 0.00 -0.18 8.01 -2.39 -0.02 -0.20 16 22 H 0.00 -0.15 8.01 -2.39 -0.02 -0.17 16 23 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 24 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 25 H 0.06 1.67 8.10 -2.39 -0.02 1.65 16 26 H 0.06 1.66 8.14 -2.38 -0.02 1.64 16 27 H 0.17 2.19 8.06 -2.91 -0.02 2.16 16 28 H 0.16 2.37 8.06 -2.91 -0.02 2.35 16 29 H 0.11 2.32 7.98 -2.38 -0.02 2.30 16 30 H 0.14 1.84 8.14 -2.39 -0.02 1.82 16 Total: -1.00 -68.62 265.79 4.45 -64.17 By element: Atomic # 1 Polarization: 1.26 SS G_CDS: 1.21 Total: 2.47 kcal Atomic # 6 Polarization: -37.20 SS G_CDS: 2.44 Total: -34.76 kcal Atomic # 7 Polarization: -57.25 SS G_CDS: 0.29 Total: -56.96 kcal Atomic # 8 Polarization: -25.17 SS G_CDS: -1.54 Total: -26.71 kcal Atomic # 14 Polarization: 49.74 SS G_CDS: 2.05 Total: 51.79 kcal Total: -68.62 4.45 -64.17 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205672110.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.824 kcal (2) G-P(sol) polarization free energy of solvation -68.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds