Wall clock time and date at job start Sun Mar 29 2020 21:29:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48506 * 109.46838 * 269.99383 * 3 2 1 5 5 H 1.48497 * 109.47419 * 29.99534 * 3 2 1 6 6 H 1.48499 * 109.47011 * 150.00096 * 3 2 1 7 7 C 1.37876 * 119.99563 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47060 * 180.02562 * 10 9 7 12 12 O 1.42903 * 109.46726 * 180.02562 * 11 10 9 13 13 C 1.42907 * 113.99838 * 179.97438 * 12 11 10 14 14 H 1.09006 * 110.19991 * 29.29597 * 13 12 11 15 15 C 1.50817 * 110.22964 * 267.40957 * 13 12 11 16 16 C 1.32712 * 110.41735 * 241.01121 * 15 13 12 17 17 C 1.45876 * 112.30019 * 359.92133 * 16 15 13 18 18 O 1.21326 * 126.23465 * 180.02562 * 17 16 15 19 19 C 1.51370 * 107.51970 * 0.04806 * 17 16 15 20 20 H 0.97002 * 119.99731 * 0.02562 * 1 2 3 21 21 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 22 22 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 23 23 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 24 24 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 25 25 H 1.09001 * 109.47194 * 299.99650 * 11 10 9 26 26 H 1.08992 * 109.47399 * 59.99823 * 11 10 9 27 27 H 1.07999 * 124.74097 * 60.97330 * 15 13 12 28 28 H 1.07996 * 123.83679 * 179.97438 * 16 15 13 29 29 H 1.08999 * 110.49991 * 241.33593 * 19 17 16 30 30 H 1.09001 * 110.49671 * 118.66117 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4002 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4800 -4.9871 -0.0001 12 8 2.4087 -6.0733 0.0005 13 6 1.7940 -7.3634 0.0005 14 1 0.8269 -7.3196 -0.5004 15 6 1.6269 -7.8614 1.4143 16 6 2.3052 -8.9883 1.5914 17 6 3.0029 -9.4104 0.3818 18 8 3.6941 -10.4002 0.2610 19 6 2.7076 -8.3881 -0.6948 20 1 -0.4850 0.8401 -0.0004 21 1 0.6246 -2.5571 -0.8897 22 1 0.6240 -2.5566 0.8902 23 1 2.8718 -3.6044 0.8905 24 1 2.8718 -3.6044 -0.8895 25 1 0.8531 -5.0451 0.8897 26 1 0.8537 -5.0446 -0.8902 27 1 1.0387 -7.3693 2.1747 28 1 2.3361 -9.5313 2.5244 29 1 2.1895 -8.8548 -1.5326 30 1 3.6284 -7.9118 -1.0316 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205672113.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:29:39 Heat of formation + Delta-G solvation = -78.208693 kcal Electronic energy + Delta-G solvation = -12993.818902 eV Core-core repulsion = 10561.300226 eV Total energy + Delta-G solvation = -2432.518676 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.104 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.19786 -38.06122 -35.56414 -33.72754 -31.51539 -29.34731 -26.87567 -25.68473 -23.04552 -20.88973 -20.19823 -19.33589 -17.04266 -16.85933 -16.15099 -15.27840 -14.84485 -14.58169 -14.44406 -14.02833 -13.26825 -13.09510 -12.54217 -12.25988 -11.79710 -11.66311 -11.56390 -10.92401 -10.60461 -10.55940 -10.01517 -9.89408 -9.75980 -9.48892 -9.37501 -9.15363 -8.39505 -6.04942 -4.07316 0.78133 2.63072 3.30213 3.36450 3.40204 3.79661 3.95175 4.25780 4.43533 4.67091 4.82223 5.07484 5.31392 5.37315 5.39544 5.61034 5.67254 5.79721 5.85295 6.03713 6.10434 6.59714 6.61150 7.01741 7.31080 7.37391 7.60263 7.72038 7.94210 8.36764 8.99279 9.57197 11.06570 Molecular weight = 210.10amu Principal moments of inertia in cm(-1) A = 0.087498 B = 0.004585 C = 0.004509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 319.929713 B = 6105.909977 C = 6208.998993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.521 4.521 8 H 0.057 0.943 9 C 0.023 3.977 10 C -0.109 4.109 11 C 0.058 3.942 12 O -0.371 6.371 13 C 0.096 3.904 14 H 0.089 0.911 15 C -0.082 4.082 16 C -0.241 4.241 17 C 0.392 3.608 18 O -0.452 6.452 19 C -0.180 4.180 20 H 0.261 0.739 21 H 0.017 0.983 22 H 0.017 0.983 23 H 0.056 0.944 24 H 0.057 0.943 25 H 0.047 0.953 26 H 0.049 0.951 27 H 0.148 0.852 28 H 0.141 0.859 29 H 0.112 0.888 30 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.889 -14.446 0.840 14.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.144 4.144 3 Si 0.722 3.278 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.559 4.559 8 H 0.075 0.925 9 C -0.014 4.014 10 C -0.146 4.146 11 C -0.018 4.018 12 O -0.290 6.290 13 C 0.038 3.962 14 H 0.106 0.894 15 C -0.101 4.101 16 C -0.260 4.260 17 C 0.271 3.729 18 O -0.328 6.328 19 C -0.217 4.217 20 H 0.071 0.929 21 H 0.036 0.964 22 H 0.036 0.964 23 H 0.075 0.925 24 H 0.075 0.925 25 H 0.065 0.935 26 H 0.067 0.933 27 H 0.166 0.834 28 H 0.159 0.841 29 H 0.130 0.870 30 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 1.300 -14.805 0.765 14.882 hybrid contribution -0.031 1.055 0.164 1.068 sum 1.269 -13.750 0.929 13.840 Atomic orbital electron populations 1.69963 1.06084 1.26705 1.50822 1.25021 0.94868 0.99333 0.95214 0.86563 0.79855 0.83267 0.78155 1.20613 1.21200 1.19808 1.21214 0.93155 0.90836 1.50697 0.92507 1.19050 0.93891 0.91054 0.97371 1.21674 0.99724 0.91564 1.01675 1.22953 0.92214 0.86796 0.99818 1.88066 1.33876 1.12371 1.94720 1.21617 0.96977 0.85336 0.92308 0.89372 1.24850 0.92928 0.93805 0.98488 1.23537 1.01715 1.00189 1.00555 1.22766 0.76699 0.84014 0.89458 1.90556 1.31911 1.25915 1.84420 1.22657 1.03310 0.96495 0.99253 0.92948 0.96445 0.96440 0.92480 0.92457 0.93467 0.93305 0.83422 0.84107 0.86964 0.86137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.50 13.29 55.43 0.74 -25.76 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.52 -14.57 9.11 -34.44 -0.31 -14.89 16 8 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 9 C 0.02 0.59 4.97 -27.89 -0.14 0.45 16 10 C -0.11 -2.21 5.52 -26.73 -0.15 -2.35 16 11 C 0.06 0.94 5.78 37.16 0.21 1.15 16 12 O -0.37 -5.55 9.95 -35.23 -0.35 -5.90 16 13 C 0.10 1.06 3.44 -27.37 -0.09 0.97 16 14 H 0.09 0.83 7.82 -51.93 -0.41 0.42 16 15 C -0.08 -0.81 10.61 -36.14 -0.38 -1.20 16 16 C -0.24 -2.47 10.62 -38.41 -0.41 -2.88 16 17 C 0.39 4.69 7.77 -30.93 -0.24 4.45 16 18 O -0.45 -6.80 18.03 5.52 0.10 -6.70 16 19 C -0.18 -1.85 6.78 -27.09 -0.18 -2.04 16 20 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 21 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 22 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 23 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 24 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 25 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 26 H 0.05 0.75 8.10 -51.93 -0.42 0.33 16 27 H 0.15 1.23 8.06 -52.49 -0.42 0.80 16 28 H 0.14 1.23 8.06 -52.49 -0.42 0.81 16 29 H 0.11 0.91 8.14 -51.93 -0.42 0.48 16 30 H 0.12 1.31 7.98 -51.93 -0.41 0.89 16 LS Contribution 267.11 15.07 4.03 4.03 Total: -1.00 -31.25 267.11 -6.47 -37.71 By element: Atomic # 1 Polarization: -0.79 SS G_CDS: -4.16 Total: -4.96 kcal Atomic # 6 Polarization: -13.03 SS G_CDS: -1.79 Total: -14.82 kcal Atomic # 7 Polarization: -26.50 SS G_CDS: 0.74 Total: -25.76 kcal Atomic # 8 Polarization: -12.35 SS G_CDS: -0.25 Total: -12.60 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -31.25 -6.47 -37.71 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205672113.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.496 kcal (2) G-P(sol) polarization free energy of solvation -31.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds