Wall clock time and date at job start Sun Mar 29 2020 21:29:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48506 * 109.46838 * 269.99383 * 3 2 1 5 5 H 1.48497 * 109.47419 * 29.99534 * 3 2 1 6 6 H 1.48499 * 109.47011 * 150.00096 * 3 2 1 7 7 C 1.37876 * 119.99563 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47060 * 180.02562 * 10 9 7 12 12 O 1.42903 * 109.46726 * 180.02562 * 11 10 9 13 13 C 1.42907 * 113.99838 * 179.97438 * 12 11 10 14 14 H 1.09006 * 110.19991 * 29.29597 * 13 12 11 15 15 C 1.50817 * 110.22964 * 267.40957 * 13 12 11 16 16 C 1.32712 * 110.41735 * 241.01121 * 15 13 12 17 17 C 1.45876 * 112.30019 * 359.92133 * 16 15 13 18 18 O 1.21326 * 126.23465 * 180.02562 * 17 16 15 19 19 C 1.51370 * 107.51970 * 0.04806 * 17 16 15 20 20 H 0.97002 * 119.99731 * 0.02562 * 1 2 3 21 21 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 22 22 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 23 23 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 24 24 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 25 25 H 1.09001 * 109.47194 * 299.99650 * 11 10 9 26 26 H 1.08992 * 109.47399 * 59.99823 * 11 10 9 27 27 H 1.07999 * 124.74097 * 60.97330 * 15 13 12 28 28 H 1.07996 * 123.83679 * 179.97438 * 16 15 13 29 29 H 1.08999 * 110.49991 * 241.33593 * 19 17 16 30 30 H 1.09001 * 110.49671 * 118.66117 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4002 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4800 -4.9871 -0.0001 12 8 2.4087 -6.0733 0.0005 13 6 1.7940 -7.3634 0.0005 14 1 0.8269 -7.3196 -0.5004 15 6 1.6269 -7.8614 1.4143 16 6 2.3052 -8.9883 1.5914 17 6 3.0029 -9.4104 0.3818 18 8 3.6941 -10.4002 0.2610 19 6 2.7076 -8.3881 -0.6948 20 1 -0.4850 0.8401 -0.0004 21 1 0.6246 -2.5571 -0.8897 22 1 0.6240 -2.5566 0.8902 23 1 2.8718 -3.6044 0.8905 24 1 2.8718 -3.6044 -0.8895 25 1 0.8531 -5.0451 0.8897 26 1 0.8537 -5.0446 -0.8902 27 1 1.0387 -7.3693 2.1747 28 1 2.3361 -9.5313 2.5244 29 1 2.1895 -8.8548 -1.5326 30 1 3.6284 -7.9118 -1.0316 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205672113.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:29:39 Heat of formation + Delta-G solvation = -97.532467 kcal Electronic energy + Delta-G solvation = -12994.656844 eV Core-core repulsion = 10561.300226 eV Total energy + Delta-G solvation = -2433.356618 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.104 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.13315 -39.15908 -36.73468 -35.53651 -33.35737 -30.24228 -28.57303 -26.72103 -24.81781 -22.12192 -21.56504 -20.21465 -18.61009 -17.91603 -17.61452 -16.54976 -16.47945 -15.81255 -15.66764 -15.13090 -14.52331 -14.37723 -14.06208 -13.59270 -13.31308 -13.07754 -12.74017 -12.60185 -12.40505 -12.08779 -11.68613 -11.46923 -11.19494 -10.86335 -10.64597 -10.54465 -10.48331 -8.20205 -6.30428 -0.08178 1.42259 1.42739 1.54100 1.75785 2.41369 2.75395 3.11691 3.13770 3.42520 3.78669 3.98751 4.21073 4.30887 4.37488 4.57393 4.62548 4.65397 4.94713 4.98763 5.00150 5.07264 5.19915 5.28494 5.52102 5.73767 5.85372 6.17005 6.30067 6.42828 6.85750 7.38855 8.91573 Molecular weight = 210.10amu Principal moments of inertia in cm(-1) A = 0.087498 B = 0.004585 C = 0.004509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 319.929713 B = 6105.909977 C = 6208.998993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.003 3.997 3 Si 0.963 3.037 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.265 1.265 7 C -0.546 4.546 8 H 0.057 0.943 9 C 0.027 3.973 10 C -0.100 4.100 11 C 0.069 3.931 12 O -0.386 6.386 13 C 0.088 3.912 14 H 0.112 0.888 15 C -0.072 4.072 16 C -0.247 4.247 17 C 0.389 3.611 18 O -0.491 6.491 19 C -0.176 4.176 20 H 0.264 0.736 21 H -0.001 1.001 22 H 0.000 1.000 23 H 0.052 0.948 24 H 0.052 0.948 25 H 0.059 0.941 26 H 0.059 0.941 27 H 0.168 0.832 28 H 0.155 0.845 29 H 0.137 0.863 30 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.961 -14.421 0.967 14.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.195 4.195 3 Si 0.787 3.213 4 H -0.198 1.198 5 H -0.206 1.206 6 H -0.190 1.190 7 C -0.584 4.584 8 H 0.076 0.924 9 C -0.010 4.010 10 C -0.137 4.137 11 C -0.007 4.007 12 O -0.306 6.306 13 C 0.030 3.970 14 H 0.130 0.870 15 C -0.091 4.091 16 C -0.266 4.266 17 C 0.271 3.729 18 O -0.370 6.370 19 C -0.213 4.213 20 H 0.073 0.927 21 H 0.017 0.983 22 H 0.018 0.982 23 H 0.071 0.929 24 H 0.071 0.929 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.186 0.814 28 H 0.173 0.827 29 H 0.155 0.845 30 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 1.373 -14.787 0.893 14.877 hybrid contribution -0.074 1.016 0.117 1.025 sum 1.298 -13.771 1.010 13.868 Atomic orbital electron populations 1.70074 1.07636 1.27822 1.51602 1.25917 0.95768 1.03165 0.94678 0.85480 0.78673 0.78608 0.78498 1.19798 1.20641 1.18965 1.21677 0.93546 0.92452 1.50694 0.92439 1.18931 0.94259 0.92327 0.95525 1.21412 0.98669 0.92438 1.01227 1.22636 0.91616 0.85455 1.00945 1.88016 1.34184 1.13434 1.94969 1.21897 0.98004 0.83553 0.93537 0.87020 1.25001 0.92507 0.93391 0.98171 1.23607 1.01701 1.00715 1.00561 1.23155 0.75727 0.83478 0.90552 1.90545 1.33780 1.27590 1.85111 1.22681 1.03266 0.95840 0.99538 0.92693 0.98263 0.98170 0.92903 0.92882 0.92242 0.92327 0.81444 0.82744 0.84512 0.86717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.29 13.29 21.45 0.28 -55.00 16 2 C 0.00 0.15 5.46 84.65 0.46 0.61 16 3 Si 0.96 43.60 29.54 68.60 2.03 45.62 16 4 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 5 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 6 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 7 C -0.55 -30.62 9.11 25.60 0.23 -30.39 16 8 H 0.06 3.13 7.74 -2.91 -0.02 3.11 16 9 C 0.03 1.35 4.97 29.85 0.15 1.50 16 10 C -0.10 -3.99 5.52 30.59 0.17 -3.82 16 11 C 0.07 2.12 5.78 71.98 0.42 2.54 16 12 O -0.39 -10.72 9.95 -148.98 -1.48 -12.20 16 13 C 0.09 1.71 3.44 30.18 0.10 1.81 16 14 H 0.11 1.71 7.82 -2.38 -0.02 1.69 16 15 C -0.07 -1.24 10.61 24.55 0.26 -0.98 16 16 C -0.25 -4.58 10.62 23.08 0.25 -4.33 16 17 C 0.39 8.86 7.77 27.88 0.22 9.08 16 18 O -0.49 -14.65 18.03 -3.17 -0.06 -14.71 16 19 C -0.18 -3.29 6.78 30.36 0.21 -3.09 16 20 H 0.26 14.72 8.31 -92.71 -0.77 13.95 16 21 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 22 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 23 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 24 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 25 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 26 H 0.06 1.68 8.10 -2.39 -0.02 1.66 16 27 H 0.17 2.22 8.06 -2.91 -0.02 2.20 16 28 H 0.15 2.40 8.06 -2.91 -0.02 2.38 16 29 H 0.14 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.11 2.34 7.98 -2.39 -0.02 2.32 16 Total: -1.00 -66.56 267.11 4.34 -62.22 By element: Atomic # 1 Polarization: 0.02 SS G_CDS: 1.11 Total: 1.13 kcal Atomic # 6 Polarization: -29.52 SS G_CDS: 2.46 Total: -27.06 kcal Atomic # 7 Polarization: -55.29 SS G_CDS: 0.28 Total: -55.00 kcal Atomic # 8 Polarization: -25.37 SS G_CDS: -1.54 Total: -26.91 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.62 kcal Total: -66.56 4.34 -62.22 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205672113.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.307 kcal (2) G-P(sol) polarization free energy of solvation -66.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds