Wall clock time and date at job start Sun Mar 29 2020 21:40:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46907 * 109.46687 * 2 1 4 4 C 1.46901 * 111.00022 * 75.94341 * 3 2 1 5 5 C 1.50692 * 109.46928 * 195.87282 * 4 3 2 6 6 H 1.07997 * 120.00525 * 355.90447 * 5 4 3 7 7 C 1.37881 * 119.99918 * 175.91135 * 5 4 3 8 8 N 1.31515 * 120.00102 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 119.99716 * 359.97438 * 7 5 4 10 10 H 1.48495 * 109.47265 * 90.00703 * 9 7 5 11 11 H 1.48507 * 109.47076 * 210.00207 * 9 7 5 12 12 H 1.48496 * 109.47494 * 330.00148 * 9 7 5 13 13 C 1.46904 * 110.99722 * 199.89589 * 3 2 1 14 14 C 1.50695 * 109.47181 * 66.04329 * 13 3 2 15 15 C 1.41385 * 128.00267 * 90.00162 * 14 13 3 16 16 N 1.30174 * 106.39659 * 179.97438 * 15 14 13 17 17 O 1.20922 * 111.60268 * 0.02562 * 16 15 14 18 18 C 1.34038 * 111.56569 * 359.76275 * 17 16 15 19 19 H 1.09003 * 109.47118 * 181.79348 * 1 2 3 20 20 H 1.08996 * 109.47853 * 301.79776 * 1 2 3 21 21 H 1.09009 * 109.46855 * 61.79785 * 1 2 3 22 22 H 1.09000 * 109.47199 * 240.00266 * 2 1 3 23 23 H 1.09000 * 109.46787 * 119.99772 * 2 1 3 24 24 H 1.09002 * 109.46945 * 315.87423 * 4 3 2 25 25 H 1.09006 * 109.46919 * 75.86952 * 4 3 2 26 26 H 0.97007 * 119.99880 * 179.97438 * 8 7 5 27 27 H 1.08996 * 109.47392 * 186.05019 * 13 3 2 28 28 H 1.09005 * 109.46990 * 306.04472 * 13 3 2 29 29 H 1.07997 * 126.80189 * 359.94435 * 15 14 13 30 30 H 1.08005 * 126.77696 * 180.28669 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 1.8810 1.9925 1.3304 5 6 2.0155 3.4890 1.2158 6 1 2.2525 3.9385 0.2628 7 6 1.8362 4.2844 2.3276 8 7 1.9531 5.5905 2.2275 9 14 1.4258 3.5069 3.9758 10 1 2.6825 3.2001 4.7050 11 1 0.6060 4.4504 4.7778 12 1 0.6627 2.2523 3.7551 13 6 3.4109 1.4516 -0.4667 14 6 3.4739 1.0490 -1.9176 15 6 3.3584 1.8783 -3.0569 16 7 3.4748 1.0982 -4.0924 17 8 3.6394 -0.0543 -3.7654 18 6 3.6588 -0.1901 -2.4321 19 1 -0.3633 -1.0272 0.0322 20 1 -0.3635 0.5415 0.8734 21 1 -0.3633 0.4857 -0.9058 22 1 1.8933 -0.5138 -0.8900 23 1 1.8933 -0.5138 0.8900 24 1 0.9022 1.7461 1.7421 25 1 2.6596 1.6069 1.9887 26 1 1.8266 6.1502 3.0098 27 1 3.7831 2.4700 -0.3557 28 1 4.0256 0.7736 0.1255 29 1 3.2038 2.9471 -3.0661 30 1 3.7941 -1.1069 -1.8774 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205697153.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:51 Heat of formation + Delta-G solvation = 67.368739 kcal Electronic energy + Delta-G solvation = -13851.168429 eV Core-core repulsion = 11457.255215 eV Total energy + Delta-G solvation = -2393.913214 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -44.66148 -37.42105 -33.78594 -32.59571 -31.62091 -30.32541 -27.90718 -25.21476 -22.85895 -22.17220 -21.12702 -19.82524 -17.59016 -17.29154 -16.89324 -15.16402 -14.98590 -14.21491 -14.03414 -13.70831 -13.21012 -12.84997 -12.44439 -11.99947 -11.81083 -11.40798 -11.31923 -10.87421 -10.78238 -10.64493 -10.13903 -9.95629 -9.86695 -9.43867 -9.08931 -8.61484 -7.47563 -6.08972 -4.06482 1.72495 2.56435 3.24594 3.33065 3.33763 3.47914 4.38022 4.59913 4.81251 5.02806 5.19972 5.23871 5.48435 5.56541 5.71433 5.86358 5.93272 6.11506 6.13953 6.22641 6.37423 6.49939 6.65009 6.78993 6.84914 7.57215 7.83597 7.94739 8.48885 8.60719 8.99327 9.52466 11.04076 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.040943 B = 0.008548 C = 0.007574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.717928 B = 3274.849172 C = 3696.047755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.044 3.956 3 N -0.522 5.522 4 C 0.161 3.839 5 C -0.509 4.509 6 H 0.081 0.919 7 C 0.069 3.931 8 N -0.899 5.899 9 Si 0.874 3.126 10 H -0.278 1.278 11 H -0.285 1.285 12 H -0.267 1.267 13 C 0.131 3.869 14 C -0.170 4.170 15 C 0.011 3.989 16 N -0.377 5.377 17 O 0.088 5.912 18 C -0.076 4.076 19 H 0.047 0.953 20 H 0.058 0.942 21 H 0.058 0.942 22 H 0.062 0.938 23 H 0.024 0.976 24 H 0.034 0.966 25 H -0.015 1.015 26 H 0.264 0.736 27 H 0.103 0.897 28 H 0.035 0.965 29 H 0.191 0.809 30 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.113 -11.986 -4.799 13.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.085 4.085 3 N -0.247 5.247 4 C 0.035 3.965 5 C -0.547 4.547 6 H 0.099 0.901 7 C -0.133 4.133 8 N -0.538 5.538 9 Si 0.701 3.299 10 H -0.203 1.203 11 H -0.211 1.211 12 H -0.192 1.192 13 C 0.003 3.997 14 C -0.174 4.174 15 C -0.168 4.168 16 N -0.081 5.081 17 O 0.024 5.976 18 C -0.159 4.159 19 H 0.066 0.934 20 H 0.077 0.923 21 H 0.077 0.923 22 H 0.080 0.920 23 H 0.042 0.958 24 H 0.052 0.948 25 H 0.003 0.997 26 H 0.074 0.926 27 H 0.121 0.879 28 H 0.054 0.946 29 H 0.208 0.792 30 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 1.779 -11.344 -6.336 13.115 hybrid contribution 0.187 -0.591 2.494 2.570 sum 1.967 -11.935 -3.842 12.692 Atomic orbital electron populations 1.21723 0.95413 1.00081 1.02825 1.22119 0.96284 0.90757 0.99330 1.61971 1.18062 1.15316 1.29324 1.20258 0.95897 0.96131 0.84228 1.21025 1.47756 0.88609 0.97360 0.90124 1.24899 0.95020 0.94708 0.98671 1.69892 1.50221 1.03545 1.30148 0.86890 0.78864 0.79578 0.84568 1.20340 1.21121 1.19171 1.20313 0.90503 1.02670 0.86259 1.21601 1.05030 0.92285 0.98514 1.25045 1.01641 1.02563 0.87569 1.73831 1.19093 0.90243 1.24973 1.84757 1.66862 1.23097 1.22898 1.25749 1.05710 1.00767 0.83646 0.93444 0.92343 0.92291 0.92003 0.95770 0.94762 0.99742 0.92635 0.87914 0.94644 0.79203 0.77399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.24 10.05 37.16 0.37 -1.87 16 2 C 0.04 0.71 5.56 -3.82 -0.02 0.69 16 3 N -0.52 -10.36 4.37 -237.51 -1.04 -11.40 16 4 C 0.16 3.73 3.64 -4.98 -0.02 3.71 16 5 C -0.51 -13.96 9.07 -34.44 -0.31 -14.27 16 6 H 0.08 2.40 7.68 -52.49 -0.40 2.00 16 7 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 8 N -0.90 -27.01 13.96 55.43 0.77 -26.23 16 9 Si 0.87 20.97 27.55 -169.99 -4.68 16.29 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.27 -6.15 6.43 56.52 0.36 -5.78 16 13 C 0.13 2.30 5.39 -4.98 -0.03 2.28 16 14 C -0.17 -2.64 5.22 -104.43 -0.55 -3.18 16 15 C 0.01 0.17 12.16 -17.06 -0.21 -0.04 16 16 N -0.38 -6.09 12.07 30.35 0.37 -5.72 16 17 O 0.09 1.27 11.20 17.18 0.19 1.46 16 18 C -0.08 -0.98 10.66 29.73 0.32 -0.66 16 19 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 20 H 0.06 1.01 6.72 -51.93 -0.35 0.66 16 21 H 0.06 0.96 8.14 -51.92 -0.42 0.53 16 22 H 0.06 0.88 5.51 -51.93 -0.29 0.60 16 23 H 0.02 0.38 8.00 -51.93 -0.42 -0.03 16 24 H 0.03 0.81 5.29 -51.93 -0.27 0.54 16 25 H -0.02 -0.35 7.69 -51.93 -0.40 -0.75 16 26 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 27 H 0.10 2.03 7.02 -51.93 -0.36 1.66 16 28 H 0.04 0.57 8.12 -51.93 -0.42 0.15 16 29 H 0.19 2.87 8.06 -52.49 -0.42 2.44 16 30 H 0.21 1.83 7.95 -52.48 -0.42 1.41 16 LS Contribution 253.65 15.07 3.82 3.82 Total: -1.00 -30.28 253.65 -4.88 -35.16 By element: Atomic # 1 Polarization: 1.90 SS G_CDS: -3.77 Total: -1.88 kcal Atomic # 6 Polarization: -10.96 SS G_CDS: -0.54 Total: -11.50 kcal Atomic # 7 Polarization: -43.45 SS G_CDS: 0.10 Total: -43.35 kcal Atomic # 8 Polarization: 1.27 SS G_CDS: 0.19 Total: 1.46 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -4.68 Total: 16.29 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -30.28 -4.88 -35.16 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205697153.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.529 kcal (2) G-P(sol) polarization free energy of solvation -30.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.160 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds