Wall clock time and date at job start Sun Mar 29 2020 21:35:08
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50693 * 1
3 3 C 1.35311 * 126.12923 * 2 1
4 4 C 1.50699 * 126.03912 * 0.02673 * 3 2 1
5 5 H 1.09000 * 109.47223 * 34.71544 * 4 3 2
6 6 C 1.53000 * 109.47384 * 274.71508 * 4 3 2
7 7 O 1.42905 * 109.47324 * 154.71542 * 4 3 2
8 8 C 1.34929 * 116.99984 * 210.00288 * 7 4 3
9 9 H 1.08002 * 119.99806 * 359.97438 * 8 7 4
10 10 C 1.38636 * 119.99824 * 180.27471 * 8 7 4
11 11 N 1.31584 * 119.99830 * 359.72370 * 10 8 7
12 12 Si 1.86801 * 119.99919 * 179.72215 * 10 8 7
13 13 H 1.48496 * 109.46852 * 359.97438 * 12 10 8
14 14 H 1.48499 * 109.47021 * 119.99718 * 12 10 8
15 15 H 1.48501 * 109.47039 * 240.00135 * 12 10 8
16 16 C 1.39875 * 107.92294 * 179.76499 * 3 2 1
17 17 N 1.30833 * 108.20135 * 0.24195 * 16 3 2
18 18 N 1.34955 * 126.12452 * 180.18165 * 2 1 3
19 19 C 1.46496 * 126.03824 * 359.97438 * 18 2 1
20 20 H 1.08994 * 109.47645 * 89.99550 * 1 2 3
21 21 H 1.09002 * 109.47115 * 210.00440 * 1 2 3
22 22 H 1.08999 * 109.47021 * 329.99423 * 1 2 3
23 23 H 1.09001 * 109.47630 * 180.02562 * 6 4 3
24 24 H 1.09000 * 109.46969 * 300.00191 * 6 4 3
25 25 H 1.09000 * 109.47394 * 59.99531 * 6 4 3
26 26 H 0.96995 * 119.99730 * 180.02562 * 11 10 8
27 27 H 1.08001 * 125.89877 * 180.26079 * 16 3 2
28 28 H 1.08998 * 109.46813 * 270.25668 * 19 18 2
29 29 H 1.08993 * 109.47211 * 30.26207 * 19 18 2
30 30 H 1.09000 * 109.46990 * 150.26065 * 19 18 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5069 0.0000 0.0000
3 6 2.3047 1.0929 0.0000
4 6 1.8433 2.5275 0.0006
5 1 0.9281 2.6146 0.5862
6 6 1.5737 2.9771 -1.4368
7 8 2.8573 3.3539 0.5759
8 6 2.4484 4.4677 1.2183
9 1 1.3954 4.7000 1.2794
10 6 3.3802 5.3171 1.7946
11 7 4.6631 5.0342 1.7198
12 14 2.8146 6.8632 2.6774
13 1 1.3333 6.9516 2.6206
14 1 3.2540 6.8126 4.0950
15 1 3.4067 8.0545 2.0177
16 6 3.6335 0.6559 0.0055
17 7 3.6334 -0.6524 0.0034
18 7 2.3025 -1.0901 -0.0035
19 6 1.8538 -2.4846 -0.0073
20 1 -0.3634 0.0001 -1.0276
21 1 -0.3633 -0.8900 0.5139
22 1 -0.3633 0.8899 0.5139
23 1 1.2403 4.0149 -1.4365
24 1 2.4888 2.8901 -2.0224
25 1 0.8002 2.3468 -1.8757
26 1 5.3151 5.6283 2.1233
27 1 4.5083 1.2891 0.0108
28 1 1.7385 -2.8320 1.0193
29 1 0.8974 -2.5571 -0.5251
30 1 2.5918 -3.1023 -0.5192
RHF calculation, no. of doubly occupied orbitals= 39
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001224378715.mol2 30
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 21:35:08
Heat of formation + Delta-G solvation = 38.707027 kcal
Electronic energy + Delta-G solvation = -13837.527946 eV
Core-core repulsion = 11442.371867 eV
Total energy + Delta-G solvation = -2395.156079 eV
No. of doubly occupied orbitals = 39
Molecular weight
(most abundant/longest-lived isotopes) = 210.111 amu
Computer time = 0.16 seconds
Orbital eigenvalues (eV)
-40.78782 -36.50216 -33.11980 -32.57110 -31.33705 -29.39047 -26.46538 -26.22012
-24.45044 -21.99474 -20.10298 -18.75327 -17.36111 -16.23816 -15.31469 -14.90650
-14.12352 -13.90411 -13.51826 -13.28910 -13.00470 -12.74144 -12.40209 -12.07918
-12.00387 -11.75816 -11.36609 -11.09504 -10.93304 -10.64692 -10.18777 -9.84116
-9.66848 -8.98333 -8.74218 -7.95052 -7.67991 -5.87256 -3.49320 2.29201
2.92477 3.35153 3.38112 3.42491 3.44097 4.37061 4.77714 4.99196
5.22297 5.26798 5.41883 5.45132 5.54982 5.61038 5.84983 5.92703
6.06434 6.18183 6.33770 6.41445 6.49369 6.83452 7.01731 7.10124
7.31412 7.47267 7.54638 8.24681 8.51143 9.56558 10.27633 11.34085
Molecular weight = 210.11amu
Principal moments of inertia in cm(-1)
A = 0.049251 B = 0.007918 C = 0.007457
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 568.384093 B = 3535.454486 C = 3753.853064
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.086 4.086
2 C 0.067 3.933
3 C -0.208 4.208
4 C 0.168 3.832
5 H 0.042 0.958
6 C -0.158 4.158
7 O -0.282 6.282
8 C -0.354 4.354
9 H 0.062 0.938
10 C 0.022 3.978
11 N -0.888 5.888
12 Si 0.921 3.079
13 H -0.275 1.275
14 H -0.284 1.284
15 H -0.284 1.284
16 C 0.086 3.914
17 N -0.315 5.315
18 N -0.387 5.387
19 C 0.108 3.892
20 H 0.074 0.926
21 H 0.064 0.936
22 H 0.085 0.915
23 H 0.055 0.945
24 H 0.053 0.947
25 H 0.041 0.959
26 H 0.256 0.744
27 H 0.189 0.811
28 H 0.067 0.933
29 H 0.079 0.921
30 H 0.083 0.917
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.915 -10.709 -4.017 14.502
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.145 4.145
2 C -0.059 4.059
3 C -0.219 4.219
4 C 0.108 3.892
5 H 0.060 0.940
6 C -0.216 4.216
7 O -0.197 6.197
8 C -0.433 4.433
9 H 0.080 0.920
10 C -0.176 4.176
11 N -0.532 5.532
12 Si 0.749 3.251
13 H -0.200 1.200
14 H -0.210 1.210
15 H -0.210 1.210
16 C -0.100 4.100
17 N -0.135 5.135
18 N -0.172 5.172
19 C -0.034 4.034
20 H 0.093 0.907
21 H 0.083 0.917
22 H 0.104 0.896
23 H 0.074 0.926
24 H 0.073 0.927
25 H 0.060 0.940
26 H 0.066 0.934
27 H 0.206 0.794
28 H 0.085 0.915
29 H 0.098 0.902
30 H 0.102 0.898
Dipole moment (debyes) X Y Z Total
from point charges -7.898 -11.907 -3.983 14.833
hybrid contribution -0.931 1.510 0.501 1.843
sum -8.829 -10.397 -3.482 14.077
Atomic orbital electron populations
1.20384 0.87925 1.03461 1.02707 1.20601 0.94044 0.87140 1.04154
1.20035 0.92778 0.95298 1.13794 1.19819 0.91356 0.85435 0.92633
0.94041 1.22232 1.00567 1.00618 0.98206 1.85660 1.28878 1.34552
1.70603 1.20895 0.92148 0.98943 1.31356 0.92028 1.24909 0.95050
0.98587 0.99085 1.70022 0.99817 1.37327 1.46025 0.85948 0.78059
0.81988 0.79104 1.20010 1.21028 1.20989 1.23847 0.98703 0.90869
0.96572 1.77319 0.96029 1.13503 1.26681 1.48279 1.04220 1.05243
1.59417 1.21648 1.00430 0.78706 1.02619 0.90718 0.91727 0.89643
0.92568 0.92736 0.94019 0.93398 0.79373 0.91492 0.90201 0.89799
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.09 -1.05 9.68 36.00 0.35 -0.71 16
2 C 0.07 1.13 6.93 -82.27 -0.57 0.56 16
3 C -0.21 -4.31 5.22 -105.05 -0.55 -4.86 16
4 C 0.17 3.76 2.96 -27.88 -0.08 3.68 16
5 H 0.04 0.90 6.96 -51.93 -0.36 0.54 16
6 C -0.16 -3.10 9.51 37.16 0.35 -2.75 16
7 O -0.28 -8.02 9.02 -16.51 -0.15 -8.17 16
8 C -0.35 -10.35 9.77 30.88 0.30 -10.05 16
9 H 0.06 1.70 7.65 -52.49 -0.40 1.29 16
10 C 0.02 0.63 5.49 -17.51 -0.10 0.54 16
11 N -0.89 -27.95 13.67 55.48 0.76 -27.19 16
12 Si 0.92 22.21 29.55 -169.99 -5.02 17.19 16
13 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16
14 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16
15 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16
16 C 0.09 1.85 11.49 -17.36 -0.20 1.65 16
17 N -0.31 -6.29 12.58 30.63 0.39 -5.90 16
18 N -0.39 -6.46 4.01 -63.89 -0.26 -6.71 16
19 C 0.11 1.16 11.09 59.84 0.66 1.83 16
20 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16
21 H 0.06 0.63 7.74 -51.93 -0.40 0.23 16
22 H 0.08 1.07 7.25 -51.93 -0.38 0.70 16
23 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16
24 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16
25 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16
26 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16
27 H 0.19 4.19 8.06 -52.49 -0.42 3.77 16
28 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16
29 H 0.08 0.64 7.67 -51.93 -0.40 0.24 16
30 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16
LS Contribution 264.79 15.07 3.99 3.99
Total: -1.00 -34.85 264.79 -4.16 -39.00
By element:
Atomic # 1 Polarization: 1.93 SS G_CDS: -4.03 Total: -2.10 kcal
Atomic # 6 Polarization: -10.28 SS G_CDS: 0.17 Total: -10.10 kcal
Atomic # 7 Polarization: -40.69 SS G_CDS: 0.89 Total: -39.81 kcal
Atomic # 8 Polarization: -8.02 SS G_CDS: -0.15 Total: -8.17 kcal
Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal
Total LS contribution 3.99 Total: 3.99 kcal
Total: -34.85 -4.16 -39.00 kcal
The number of atoms in the molecule is 30
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001224378715.mol2 30
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 77.709 kcal
(2) G-P(sol) polarization free energy of solvation -34.845 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.864 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.157 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.002 kcal
(6) G-S(sol) free energy of system = (1) + (5) 38.707 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.16 seconds