Wall clock time and date at job start Sun Mar 29 2020 21:35:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.35311 * 126.12923 * 2 1 4 4 C 1.50699 * 126.03912 * 0.02673 * 3 2 1 5 5 H 1.09000 * 109.47223 * 34.71544 * 4 3 2 6 6 C 1.53000 * 109.47384 * 274.71508 * 4 3 2 7 7 O 1.42905 * 109.47324 * 154.71542 * 4 3 2 8 8 C 1.34929 * 116.99984 * 210.00288 * 7 4 3 9 9 H 1.08002 * 119.99806 * 359.97438 * 8 7 4 10 10 C 1.38636 * 119.99824 * 180.27471 * 8 7 4 11 11 N 1.31584 * 119.99830 * 359.72370 * 10 8 7 12 12 Si 1.86801 * 119.99919 * 179.72215 * 10 8 7 13 13 H 1.48496 * 109.46852 * 359.97438 * 12 10 8 14 14 H 1.48499 * 109.47021 * 119.99718 * 12 10 8 15 15 H 1.48501 * 109.47039 * 240.00135 * 12 10 8 16 16 C 1.39875 * 107.92294 * 179.76499 * 3 2 1 17 17 N 1.30833 * 108.20135 * 0.24195 * 16 3 2 18 18 N 1.34955 * 126.12452 * 180.18165 * 2 1 3 19 19 C 1.46496 * 126.03824 * 359.97438 * 18 2 1 20 20 H 1.08994 * 109.47645 * 89.99550 * 1 2 3 21 21 H 1.09002 * 109.47115 * 210.00440 * 1 2 3 22 22 H 1.08999 * 109.47021 * 329.99423 * 1 2 3 23 23 H 1.09001 * 109.47630 * 180.02562 * 6 4 3 24 24 H 1.09000 * 109.46969 * 300.00191 * 6 4 3 25 25 H 1.09000 * 109.47394 * 59.99531 * 6 4 3 26 26 H 0.96995 * 119.99730 * 180.02562 * 11 10 8 27 27 H 1.08001 * 125.89877 * 180.26079 * 16 3 2 28 28 H 1.08998 * 109.46813 * 270.25668 * 19 18 2 29 29 H 1.08993 * 109.47211 * 30.26207 * 19 18 2 30 30 H 1.09000 * 109.46990 * 150.26065 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3047 1.0929 0.0000 4 6 1.8433 2.5275 0.0006 5 1 0.9281 2.6146 0.5862 6 6 1.5737 2.9771 -1.4368 7 8 2.8573 3.3539 0.5759 8 6 2.4484 4.4677 1.2183 9 1 1.3954 4.7000 1.2794 10 6 3.3802 5.3171 1.7946 11 7 4.6631 5.0342 1.7198 12 14 2.8146 6.8632 2.6774 13 1 1.3333 6.9516 2.6206 14 1 3.2540 6.8126 4.0950 15 1 3.4067 8.0545 2.0177 16 6 3.6335 0.6559 0.0055 17 7 3.6334 -0.6524 0.0034 18 7 2.3025 -1.0901 -0.0035 19 6 1.8538 -2.4846 -0.0073 20 1 -0.3634 0.0001 -1.0276 21 1 -0.3633 -0.8900 0.5139 22 1 -0.3633 0.8899 0.5139 23 1 1.2403 4.0149 -1.4365 24 1 2.4888 2.8901 -2.0224 25 1 0.8002 2.3468 -1.8757 26 1 5.3151 5.6283 2.1233 27 1 4.5083 1.2891 0.0108 28 1 1.7385 -2.8320 1.0193 29 1 0.8974 -2.5571 -0.5251 30 1 2.5918 -3.1023 -0.5192 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224378715.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:08 Heat of formation + Delta-G solvation = 38.707027 kcal Electronic energy + Delta-G solvation = -13837.527946 eV Core-core repulsion = 11442.371867 eV Total energy + Delta-G solvation = -2395.156079 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.78782 -36.50216 -33.11980 -32.57110 -31.33705 -29.39047 -26.46538 -26.22012 -24.45044 -21.99474 -20.10298 -18.75327 -17.36111 -16.23816 -15.31469 -14.90650 -14.12352 -13.90411 -13.51826 -13.28910 -13.00470 -12.74144 -12.40209 -12.07918 -12.00387 -11.75816 -11.36609 -11.09504 -10.93304 -10.64692 -10.18777 -9.84116 -9.66848 -8.98333 -8.74218 -7.95052 -7.67991 -5.87256 -3.49320 2.29201 2.92477 3.35153 3.38112 3.42491 3.44097 4.37061 4.77714 4.99196 5.22297 5.26798 5.41883 5.45132 5.54982 5.61038 5.84983 5.92703 6.06434 6.18183 6.33770 6.41445 6.49369 6.83452 7.01731 7.10124 7.31412 7.47267 7.54638 8.24681 8.51143 9.56558 10.27633 11.34085 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.049251 B = 0.007918 C = 0.007457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.384093 B = 3535.454486 C = 3753.853064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.067 3.933 3 C -0.208 4.208 4 C 0.168 3.832 5 H 0.042 0.958 6 C -0.158 4.158 7 O -0.282 6.282 8 C -0.354 4.354 9 H 0.062 0.938 10 C 0.022 3.978 11 N -0.888 5.888 12 Si 0.921 3.079 13 H -0.275 1.275 14 H -0.284 1.284 15 H -0.284 1.284 16 C 0.086 3.914 17 N -0.315 5.315 18 N -0.387 5.387 19 C 0.108 3.892 20 H 0.074 0.926 21 H 0.064 0.936 22 H 0.085 0.915 23 H 0.055 0.945 24 H 0.053 0.947 25 H 0.041 0.959 26 H 0.256 0.744 27 H 0.189 0.811 28 H 0.067 0.933 29 H 0.079 0.921 30 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.915 -10.709 -4.017 14.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.059 4.059 3 C -0.219 4.219 4 C 0.108 3.892 5 H 0.060 0.940 6 C -0.216 4.216 7 O -0.197 6.197 8 C -0.433 4.433 9 H 0.080 0.920 10 C -0.176 4.176 11 N -0.532 5.532 12 Si 0.749 3.251 13 H -0.200 1.200 14 H -0.210 1.210 15 H -0.210 1.210 16 C -0.100 4.100 17 N -0.135 5.135 18 N -0.172 5.172 19 C -0.034 4.034 20 H 0.093 0.907 21 H 0.083 0.917 22 H 0.104 0.896 23 H 0.074 0.926 24 H 0.073 0.927 25 H 0.060 0.940 26 H 0.066 0.934 27 H 0.206 0.794 28 H 0.085 0.915 29 H 0.098 0.902 30 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -7.898 -11.907 -3.983 14.833 hybrid contribution -0.931 1.510 0.501 1.843 sum -8.829 -10.397 -3.482 14.077 Atomic orbital electron populations 1.20384 0.87925 1.03461 1.02707 1.20601 0.94044 0.87140 1.04154 1.20035 0.92778 0.95298 1.13794 1.19819 0.91356 0.85435 0.92633 0.94041 1.22232 1.00567 1.00618 0.98206 1.85660 1.28878 1.34552 1.70603 1.20895 0.92148 0.98943 1.31356 0.92028 1.24909 0.95050 0.98587 0.99085 1.70022 0.99817 1.37327 1.46025 0.85948 0.78059 0.81988 0.79104 1.20010 1.21028 1.20989 1.23847 0.98703 0.90869 0.96572 1.77319 0.96029 1.13503 1.26681 1.48279 1.04220 1.05243 1.59417 1.21648 1.00430 0.78706 1.02619 0.90718 0.91727 0.89643 0.92568 0.92736 0.94019 0.93398 0.79373 0.91492 0.90201 0.89799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.05 9.68 36.00 0.35 -0.71 16 2 C 0.07 1.13 6.93 -82.27 -0.57 0.56 16 3 C -0.21 -4.31 5.22 -105.05 -0.55 -4.86 16 4 C 0.17 3.76 2.96 -27.88 -0.08 3.68 16 5 H 0.04 0.90 6.96 -51.93 -0.36 0.54 16 6 C -0.16 -3.10 9.51 37.16 0.35 -2.75 16 7 O -0.28 -8.02 9.02 -16.51 -0.15 -8.17 16 8 C -0.35 -10.35 9.77 30.88 0.30 -10.05 16 9 H 0.06 1.70 7.65 -52.49 -0.40 1.29 16 10 C 0.02 0.63 5.49 -17.51 -0.10 0.54 16 11 N -0.89 -27.95 13.67 55.48 0.76 -27.19 16 12 Si 0.92 22.21 29.55 -169.99 -5.02 17.19 16 13 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 14 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 15 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 16 C 0.09 1.85 11.49 -17.36 -0.20 1.65 16 17 N -0.31 -6.29 12.58 30.63 0.39 -5.90 16 18 N -0.39 -6.46 4.01 -63.89 -0.26 -6.71 16 19 C 0.11 1.16 11.09 59.84 0.66 1.83 16 20 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 21 H 0.06 0.63 7.74 -51.93 -0.40 0.23 16 22 H 0.08 1.07 7.25 -51.93 -0.38 0.70 16 23 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 24 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 25 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 26 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 27 H 0.19 4.19 8.06 -52.49 -0.42 3.77 16 28 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.08 0.64 7.67 -51.93 -0.40 0.24 16 30 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 LS Contribution 264.79 15.07 3.99 3.99 Total: -1.00 -34.85 264.79 -4.16 -39.00 By element: Atomic # 1 Polarization: 1.93 SS G_CDS: -4.03 Total: -2.10 kcal Atomic # 6 Polarization: -10.28 SS G_CDS: 0.17 Total: -10.10 kcal Atomic # 7 Polarization: -40.69 SS G_CDS: 0.89 Total: -39.81 kcal Atomic # 8 Polarization: -8.02 SS G_CDS: -0.15 Total: -8.17 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -34.85 -4.16 -39.00 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224378715.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.709 kcal (2) G-P(sol) polarization free energy of solvation -34.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.002 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds