Wall clock time and date at job start Sun Mar 29 2020 21:35:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30834 * 125.89652 * 2 1 4 4 N 1.40085 * 108.20502 * 179.97438 * 3 2 1 5 5 C 1.46499 * 126.03983 * 180.02562 * 4 3 2 6 6 C 1.34949 * 107.92772 * 359.97438 * 4 3 2 7 7 C 1.35319 * 107.74072 * 359.75647 * 6 4 3 8 8 C 1.50698 * 126.03879 * 180.27586 * 7 6 4 9 9 H 1.09006 * 109.47071 * 215.13441 * 8 7 6 10 10 C 1.52996 * 109.47414 * 95.13726 * 8 7 6 11 11 O 1.42903 * 109.47277 * 335.13529 * 8 7 6 12 12 C 1.34924 * 117.00172 * 210.00595 * 11 8 7 13 13 H 1.08001 * 120.00075 * 359.97438 * 12 11 8 14 14 C 1.38637 * 120.00003 * 180.02562 * 12 11 8 15 15 N 1.31580 * 119.99774 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 120.00111 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47104 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.47106 * 119.99926 * 16 14 12 19 19 H 1.48501 * 109.47133 * 239.99814 * 16 14 12 20 20 H 1.09002 * 109.47152 * 90.02599 * 1 2 3 21 21 H 1.09001 * 109.46980 * 330.02699 * 1 2 3 22 22 H 1.09004 * 109.47113 * 210.02680 * 1 2 3 23 23 H 1.08992 * 109.47808 * 89.97207 * 5 4 3 24 24 H 1.09003 * 109.47286 * 209.97479 * 5 4 3 25 25 H 1.09002 * 109.46991 * 329.96604 * 5 4 3 26 26 H 1.07999 * 126.13039 * 179.97438 * 6 4 3 27 27 H 1.09000 * 109.47187 * 299.99793 * 10 8 7 28 28 H 1.08997 * 109.47250 * 60.00498 * 10 8 7 29 29 H 1.09003 * 109.47235 * 180.02562 * 10 8 7 30 30 H 0.97001 * 119.99522 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0599 0.0000 4 7 3.6087 0.6341 0.0006 5 6 4.7899 1.5008 0.0013 6 6 3.6143 -0.7153 0.0015 7 6 2.3272 -1.1330 0.0070 8 6 1.8600 -2.5657 0.0158 9 1 0.9468 -2.6537 -0.5729 10 6 1.5827 -3.0030 1.4554 11 8 2.8730 -3.4006 -0.5489 12 6 2.4623 -4.5177 -1.1844 13 1 1.4087 -4.7463 -1.2480 14 6 3.3928 -5.3726 -1.7547 15 7 4.6764 -5.0943 -1.6767 16 14 2.8242 -6.9196 -2.6338 17 1 1.3424 -7.0024 -2.5816 18 1 3.2684 -6.8757 -4.0502 19 1 3.4098 -8.1109 -1.9681 20 1 -0.3633 -0.0005 -1.0277 21 1 -0.3633 0.8902 0.5134 22 1 -0.3633 -0.8898 0.5143 23 1 5.0821 1.7160 1.0290 24 1 5.6097 0.9981 -0.5118 25 1 4.5567 2.4331 -0.5130 26 1 4.4892 -1.3485 0.0018 27 1 2.4958 -2.9150 2.0441 28 1 0.8099 -2.3663 1.8861 29 1 1.2452 -4.0394 1.4618 30 1 5.3274 -5.6923 -2.0761 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224379354.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:11 Heat of formation + Delta-G solvation = 14.008975 kcal Electronic energy + Delta-G solvation = -13810.869270 eV Core-core repulsion = 11414.642203 eV Total energy + Delta-G solvation = -2396.227067 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.17054 -38.46773 -35.09407 -34.01848 -32.26245 -30.71960 -29.51372 -26.82675 -26.21751 -23.57045 -21.45758 -20.40250 -19.46130 -17.68583 -17.06748 -16.45602 -15.90828 -15.33105 -14.98864 -14.93681 -14.30089 -14.05278 -13.88995 -13.32788 -13.30118 -13.02205 -12.94297 -12.81649 -12.75364 -12.22737 -12.06627 -11.66182 -11.39551 -11.05050 -10.11998 -10.09630 -9.20523 -8.10884 -5.77073 0.93486 1.42864 1.47478 1.58068 1.69103 1.79528 2.37766 3.23173 3.61186 3.75041 4.08203 4.26050 4.41870 4.42829 4.48969 4.55228 4.64968 4.69464 4.82785 4.91548 5.01692 5.10747 5.24295 5.31549 5.39458 5.44434 5.78734 6.15408 6.28914 6.76671 7.33432 8.16726 9.14200 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.038255 B = 0.008598 C = 0.007605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.753216 B = 3255.775821 C = 3680.764724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.072 3.928 3 N -0.324 5.324 4 N -0.384 5.384 5 C 0.096 3.904 6 C 0.072 3.928 7 C -0.246 4.246 8 C 0.163 3.837 9 H 0.045 0.955 10 C -0.148 4.148 11 O -0.322 6.322 12 C -0.363 4.363 13 H 0.072 0.928 14 C -0.044 4.044 15 N -0.939 5.939 16 Si 0.998 3.002 17 H -0.257 1.257 18 H -0.280 1.280 19 H -0.278 1.278 20 H 0.083 0.917 21 H 0.088 0.912 22 H 0.086 0.914 23 H 0.089 0.911 24 H 0.100 0.900 25 H 0.098 0.902 26 H 0.168 0.832 27 H 0.041 0.959 28 H 0.077 0.923 29 H 0.048 0.952 30 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.643 9.496 3.760 11.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.094 4.094 3 N -0.148 5.148 4 N -0.166 5.166 5 C -0.043 4.043 6 C -0.074 4.074 7 C -0.257 4.257 8 C 0.103 3.897 9 H 0.062 0.938 10 C -0.206 4.206 11 O -0.238 6.238 12 C -0.442 4.442 13 H 0.089 0.911 14 C -0.236 4.236 15 N -0.585 5.585 16 Si 0.822 3.178 17 H -0.181 1.181 18 H -0.206 1.206 19 H -0.204 1.204 20 H 0.102 0.898 21 H 0.106 0.894 22 H 0.105 0.895 23 H 0.108 0.892 24 H 0.118 0.882 25 H 0.117 0.883 26 H 0.185 0.815 27 H 0.060 0.940 28 H 0.096 0.904 29 H 0.068 0.932 30 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -4.124 10.882 3.741 12.223 hybrid contribution 0.142 -1.700 -0.436 1.761 sum -3.982 9.182 3.305 10.539 Atomic orbital electron populations 1.20299 0.84433 1.04273 1.03800 1.22623 0.98340 0.89166 0.99242 1.77067 0.87268 1.23025 1.27393 1.48654 1.05970 1.04635 1.57364 1.22148 0.82835 0.94728 1.04626 1.22359 0.99955 0.84783 1.00332 1.20167 0.93033 0.95614 1.16932 1.20034 0.90435 0.85518 0.93664 0.93752 1.22122 1.01088 1.00884 0.96471 1.85579 1.31986 1.34448 1.71779 1.21377 0.92747 0.98923 1.31155 0.91060 1.26084 0.95132 1.02352 1.00046 1.70181 1.01316 1.39035 1.47956 0.84783 0.78583 0.77030 0.77451 1.18084 1.20589 1.20358 0.89817 0.89357 0.89546 0.89232 0.88195 0.88313 0.81457 0.93990 0.90372 0.93250 0.93402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.83 10.22 71.24 0.73 -1.11 16 2 C 0.07 2.60 7.22 43.10 0.31 2.91 16 3 N -0.32 -11.73 12.58 -47.38 -0.60 -12.33 16 4 N -0.38 -13.19 4.01 -369.57 -1.48 -14.68 16 5 C 0.10 2.16 11.47 127.77 1.47 3.62 16 6 C 0.07 2.91 10.91 83.54 0.91 3.83 16 7 C -0.25 -10.24 5.24 -20.14 -0.11 -10.35 16 8 C 0.16 7.36 2.87 29.85 0.09 7.44 16 9 H 0.04 1.96 7.75 -2.38 -0.02 1.94 16 10 C -0.15 -5.75 9.51 71.98 0.68 -5.07 16 11 O -0.32 -18.54 8.98 -81.93 -0.74 -19.27 16 12 C -0.36 -21.28 9.77 67.92 0.66 -20.62 16 13 H 0.07 3.91 7.65 -2.91 -0.02 3.89 16 14 C -0.04 -2.56 5.49 84.83 0.47 -2.10 16 15 N -0.94 -59.35 13.67 21.61 0.30 -59.05 16 16 Si 1.00 45.25 29.55 68.60 2.03 47.28 16 17 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 18 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 19 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 20 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 21 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 22 H 0.09 2.09 7.70 -2.38 -0.02 2.07 16 23 H 0.09 1.64 8.14 -2.39 -0.02 1.63 16 24 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 25 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 26 H 0.17 7.07 8.04 -2.91 -0.02 7.05 16 27 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 28 H 0.08 2.46 7.89 -2.39 -0.02 2.44 16 29 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 30 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 Total: -1.00 -73.83 267.13 5.83 -68.00 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: 1.11 Total: 11.48 kcal Atomic # 6 Polarization: -26.65 SS G_CDS: 5.21 Total: -21.44 kcal Atomic # 7 Polarization: -84.27 SS G_CDS: -1.78 Total: -86.05 kcal Atomic # 8 Polarization: -18.54 SS G_CDS: -0.74 Total: -19.27 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.28 kcal Total: -73.83 5.83 -68.00 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224379354.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.008 kcal (2) G-P(sol) polarization free energy of solvation -73.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.999 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds