Wall clock time and date at job start Sun Mar 29 2020 22:01:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.47045 * 2 1 4 4 O 1.42898 * 109.46877 * 120.00032 * 2 1 3 5 5 C 1.34922 * 117.00221 * 269.99851 * 4 2 1 6 6 H 1.08007 * 119.99963 * 359.97438 * 5 4 2 7 7 C 1.38637 * 120.00346 * 180.02562 * 5 4 2 8 8 N 1.31577 * 119.99928 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00024 * 179.97438 * 7 5 4 10 10 H 1.48508 * 109.46897 * 90.00344 * 9 7 5 11 11 H 1.48503 * 109.47409 * 209.99832 * 9 7 5 12 12 H 1.48494 * 109.47470 * 330.00446 * 9 7 5 13 13 C 1.50703 * 109.46867 * 239.99895 * 2 1 3 14 14 N 1.31865 * 119.63513 * 284.97656 * 13 2 1 15 15 C 1.31845 * 121.75130 * 179.67786 * 14 13 2 16 16 C 1.38238 * 120.81726 * 0.64271 * 15 14 13 17 17 C 1.38588 * 119.18753 * 359.39683 * 16 15 14 18 18 C 1.38413 * 119.63374 * 105.00191 * 13 2 1 19 19 F 1.35100 * 120.44698 * 0.02562 * 18 13 2 20 20 H 1.09004 * 109.46980 * 299.99876 * 1 2 3 21 21 H 1.08997 * 109.47227 * 59.99824 * 1 2 3 22 22 H 1.08998 * 109.47506 * 179.97438 * 1 2 3 23 23 H 0.97000 * 120.00386 * 179.97438 * 8 7 5 24 24 H 1.08000 * 119.59832 * 180.33717 * 15 14 13 25 25 H 1.08002 * 120.40978 * 179.67953 * 16 15 14 26 26 H 1.07999 * 120.80386 * 180.30037 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.2105 0.0787 2.2680 6 1 2.0149 1.1405 2.2405 7 6 2.6724 -0.5110 3.4346 8 7 2.9113 -1.8045 3.4680 9 14 2.9558 0.5307 4.9590 10 1 1.7110 0.5734 5.7677 11 1 4.0511 -0.0625 5.7675 12 1 3.3304 1.9094 4.5539 13 6 2.0323 -0.7105 -1.2305 14 7 1.9704 -2.0261 -1.2947 15 6 2.3919 -2.6896 -2.3532 16 6 2.9309 -2.0238 -3.4381 17 6 3.0139 -0.6407 -3.4092 18 6 2.5540 0.0252 -2.2805 19 9 2.6157 1.3728 -2.2081 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3634 -1.0276 -0.0005 23 1 3.2348 -2.2171 4.2840 24 1 2.3197 -3.7671 -2.3709 25 1 3.2789 -2.5743 -4.2997 26 1 3.4258 -0.0938 -4.2444 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224381382.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:57 Heat of formation + Delta-G solvation = -42.596507 kcal Electronic energy + Delta-G solvation = -13612.433049 eV Core-core repulsion = 10992.572417 eV Total energy + Delta-G solvation = -2619.860632 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 211.075 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -48.70599 -39.77240 -36.53850 -32.76595 -31.79695 -30.93260 -28.88725 -24.77299 -24.00115 -23.04573 -20.67910 -17.82703 -17.26595 -16.71891 -16.27917 -15.54205 -14.94205 -14.01884 -13.93292 -13.67667 -13.49125 -12.83179 -12.72225 -12.37953 -12.00843 -11.45678 -11.17446 -10.95952 -10.56237 -10.19335 -9.82247 -9.58682 -9.11599 -9.05226 -8.54015 -7.94714 -5.89500 -3.54130 1.18347 1.36041 3.34219 3.36543 3.40682 3.92563 4.23231 4.36192 4.72522 4.78860 4.94927 5.10955 5.41471 5.60111 5.71510 5.92194 6.00234 6.07208 6.10899 6.22990 6.57673 6.72584 6.85261 7.01933 7.50070 8.30598 8.46714 9.52114 10.18802 11.30554 Molecular weight = 211.07amu Principal moments of inertia in cm(-1) A = 0.042664 B = 0.008809 C = 0.008237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.129665 B = 3177.933706 C = 3398.470788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.136 3.864 3 H 0.059 0.941 4 O -0.264 6.264 5 C -0.366 4.366 6 H 0.064 0.936 7 C 0.025 3.975 8 N -0.883 5.883 9 Si 0.924 3.076 10 H -0.280 1.280 11 H -0.284 1.284 12 H -0.275 1.275 13 C 0.130 3.870 14 N -0.421 5.421 15 C 0.087 3.913 16 C -0.161 4.161 17 C -0.114 4.114 18 C 0.045 3.955 19 F -0.131 7.131 20 H 0.065 0.935 21 H 0.042 0.958 22 H 0.063 0.937 23 H 0.258 0.742 24 H 0.160 0.840 25 H 0.139 0.861 26 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.991 1.814 -12.948 13.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.076 3.924 3 H 0.077 0.923 4 O -0.179 6.179 5 C -0.445 4.445 6 H 0.082 0.918 7 C -0.173 4.173 8 N -0.526 5.526 9 Si 0.751 3.249 10 H -0.207 1.207 11 H -0.209 1.209 12 H -0.200 1.200 13 C -0.010 4.010 14 N -0.129 5.129 15 C -0.070 4.070 16 C -0.181 4.181 17 C -0.141 4.141 18 C 0.023 3.977 19 F -0.110 7.110 20 H 0.084 0.916 21 H 0.061 0.939 22 H 0.082 0.918 23 H 0.067 0.933 24 H 0.177 0.823 25 H 0.157 0.843 26 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -1.235 1.078 -12.108 12.218 hybrid contribution 0.583 1.395 -0.046 1.512 sum -0.652 2.473 -12.154 12.420 Atomic orbital electron populations 1.22217 0.96280 1.02460 1.00755 1.20528 0.93233 0.93546 0.85105 0.92315 1.85845 1.83490 1.32582 1.15940 1.20926 1.43931 0.91063 0.88618 0.91827 1.24937 0.98705 0.96021 0.97669 1.70050 1.46250 1.09160 1.27126 0.85986 0.77921 0.79110 0.81857 1.20673 1.20933 1.20036 1.21815 0.94469 0.89998 0.94704 1.67732 1.13716 1.07464 1.23982 1.22983 0.94579 1.00921 0.88559 1.22011 1.01556 0.93763 1.00749 1.21519 0.99934 0.95320 0.97330 1.18606 1.03832 0.78089 0.97169 1.91482 1.94394 1.28590 1.96523 0.91607 0.93870 0.91816 0.93255 0.82274 0.84290 0.84000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.24 9.51 37.16 0.35 -2.89 15 2 C 0.14 3.19 3.00 -27.88 -0.08 3.11 15 3 H 0.06 1.35 6.92 -51.93 -0.36 0.99 15 4 O -0.26 -7.82 9.27 -16.49 -0.15 -7.97 15 5 C -0.37 -10.96 9.77 30.88 0.30 -10.66 15 6 H 0.06 1.78 7.65 -52.48 -0.40 1.38 15 7 C 0.03 0.76 5.49 -17.51 -0.10 0.66 15 8 N -0.88 -28.34 13.67 55.48 0.76 -27.58 15 9 Si 0.92 22.43 29.55 -169.99 -5.02 17.40 15 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 15 11 H -0.28 -6.79 7.11 56.52 0.40 -6.38 15 12 H -0.28 -6.42 7.11 56.52 0.40 -6.02 15 13 C 0.13 2.73 5.76 -82.51 -0.48 2.26 15 14 N -0.42 -8.77 10.10 -9.42 -0.10 -8.86 15 15 C 0.09 1.36 11.18 -17.55 -0.20 1.16 15 16 C -0.16 -2.03 10.11 -39.45 -0.40 -2.43 15 17 C -0.11 -1.57 10.16 -39.21 -0.40 -1.97 15 18 C 0.04 0.79 7.28 -39.28 -0.29 0.51 15 19 F -0.13 -2.31 16.28 2.25 0.04 -2.27 15 20 H 0.06 1.34 8.14 -51.93 -0.42 0.91 15 21 H 0.04 0.74 8.14 -51.93 -0.42 0.31 15 22 H 0.06 1.34 8.14 -51.93 -0.42 0.91 15 23 H 0.26 7.68 8.31 -40.82 -0.34 7.34 15 24 H 0.16 1.95 8.06 -52.49 -0.42 1.52 15 25 H 0.14 1.18 8.06 -52.49 -0.42 0.76 15 26 H 0.14 1.47 8.06 -52.49 -0.42 1.04 15 LS Contribution 243.94 15.07 3.68 3.68 Total: -1.00 -34.80 243.94 -4.51 -39.31 By element: Atomic # 1 Polarization: -1.03 SS G_CDS: -2.43 Total: -3.46 kcal Atomic # 6 Polarization: -8.97 SS G_CDS: -1.28 Total: -10.25 kcal Atomic # 7 Polarization: -37.11 SS G_CDS: 0.66 Total: -36.44 kcal Atomic # 8 Polarization: -7.82 SS G_CDS: -0.15 Total: -7.97 kcal Atomic # 9 Polarization: -2.31 SS G_CDS: 0.04 Total: -2.27 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -34.80 -4.51 -39.31 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224381382.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.283 kcal (2) G-P(sol) polarization free energy of solvation -34.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds