Wall clock time and date at job start Sun Mar 29 2020 22:01:57
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 H 1.08996 * 109.47045 * 2 1
4 4 O 1.42898 * 109.46877 * 120.00032 * 2 1 3
5 5 C 1.34922 * 117.00221 * 269.99851 * 4 2 1
6 6 H 1.08007 * 119.99963 * 359.97438 * 5 4 2
7 7 C 1.38637 * 120.00346 * 180.02562 * 5 4 2
8 8 N 1.31577 * 119.99928 * 359.97438 * 7 5 4
9 9 Si 1.86800 * 120.00024 * 179.97438 * 7 5 4
10 10 H 1.48508 * 109.46897 * 90.00344 * 9 7 5
11 11 H 1.48503 * 109.47409 * 209.99832 * 9 7 5
12 12 H 1.48494 * 109.47470 * 330.00446 * 9 7 5
13 13 C 1.50703 * 109.46867 * 239.99895 * 2 1 3
14 14 N 1.31865 * 119.63513 * 284.97656 * 13 2 1
15 15 C 1.31845 * 121.75130 * 179.67786 * 14 13 2
16 16 C 1.38238 * 120.81726 * 0.64271 * 15 14 13
17 17 C 1.38588 * 119.18753 * 359.39683 * 16 15 14
18 18 C 1.38413 * 119.63374 * 105.00191 * 13 2 1
19 19 F 1.35100 * 120.44698 * 0.02562 * 18 13 2
20 20 H 1.09004 * 109.46980 * 299.99876 * 1 2 3
21 21 H 1.08997 * 109.47227 * 59.99824 * 1 2 3
22 22 H 1.08998 * 109.47506 * 179.97438 * 1 2 3
23 23 H 0.97000 * 120.00386 * 179.97438 * 8 7 5
24 24 H 1.08000 * 119.59832 * 180.33717 * 15 14 13
25 25 H 1.08002 * 120.40978 * 179.67953 * 16 15 14
26 26 H 1.07999 * 120.80386 * 180.30037 * 17 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 8 2.0063 -0.6736 1.1668
5 6 2.2105 0.0787 2.2680
6 1 2.0149 1.1405 2.2405
7 6 2.6724 -0.5110 3.4346
8 7 2.9113 -1.8045 3.4680
9 14 2.9558 0.5307 4.9590
10 1 1.7110 0.5734 5.7677
11 1 4.0511 -0.0625 5.7675
12 1 3.3304 1.9094 4.5539
13 6 2.0323 -0.7105 -1.2305
14 7 1.9704 -2.0261 -1.2947
15 6 2.3919 -2.6896 -2.3532
16 6 2.9309 -2.0238 -3.4381
17 6 3.0139 -0.6407 -3.4092
18 6 2.5540 0.0252 -2.2805
19 9 2.6157 1.3728 -2.2081
20 1 -0.3633 0.5138 0.8900
21 1 -0.3633 0.5138 -0.8899
22 1 -0.3634 -1.0276 -0.0005
23 1 3.2348 -2.2171 4.2840
24 1 2.3197 -3.7671 -2.3709
25 1 3.2789 -2.5743 -4.2997
26 1 3.4258 -0.0938 -4.2444
RHF calculation, no. of doubly occupied orbitals= 38
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001224381382.mol2 26
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 22:01:57
Heat of formation + Delta-G solvation = -67.542473 kcal
Electronic energy + Delta-G solvation = -13613.514787 eV
Core-core repulsion = 10992.572417 eV
Total energy + Delta-G solvation = -2620.942370 eV
No. of doubly occupied orbitals = 38
Molecular weight
(most abundant/longest-lived isotopes) = 211.075 amu
Computer time = 0.16 seconds
Orbital eigenvalues (eV)
-50.03807 -41.08922 -38.49823 -34.55360 -33.35080 -32.67015 -30.40582 -26.89575
-25.51797 -24.34244 -22.27617 -19.82376 -18.59912 -18.26300 -17.75040 -16.88761
-16.76158 -15.86798 -15.53190 -15.20223 -14.89250 -14.24818 -14.16502 -14.03401
-13.45557 -13.36079 -13.05777 -12.82943 -12.31713 -12.05303 -11.71689 -11.21068
-10.84132 -10.43293 -10.14440 -9.84229 -8.15839 -5.86241 -0.08723 0.18534
1.38607 1.45917 1.54851 2.31501 2.67132 2.98558 3.15337 3.41294
3.44054 3.79179 4.01538 4.10586 4.27188 4.42786 4.53091 4.71216
4.78824 4.91498 5.00272 5.04118 5.21334 5.27077 5.68941 6.21126
7.02322 7.25513 8.05514 9.08545
Molecular weight = 211.07amu
Principal moments of inertia in cm(-1)
A = 0.042664 B = 0.008809 C = 0.008237
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 656.129665 B = 3177.933706 C = 3398.470788
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.147 4.147
2 C 0.125 3.875
3 H 0.052 0.948
4 O -0.307 6.307
5 C -0.381 4.381
6 H 0.073 0.927
7 C -0.041 4.041
8 N -0.937 5.937
9 Si 1.006 2.994
10 H -0.268 1.268
11 H -0.278 1.278
12 H -0.259 1.259
13 C 0.089 3.911
14 N -0.475 5.475
15 C 0.075 3.925
16 C -0.130 4.130
17 C -0.101 4.101
18 C 0.031 3.969
19 F -0.137 7.137
20 H 0.057 0.943
21 H 0.076 0.924
22 H 0.049 0.951
23 H 0.260 0.740
24 H 0.188 0.812
25 H 0.196 0.804
26 H 0.186 0.814
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.336 2.311 -14.763 14.946
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.205 4.205
2 C 0.065 3.935
3 H 0.070 0.930
4 O -0.222 6.222
5 C -0.460 4.460
6 H 0.090 0.910
7 C -0.234 4.234
8 N -0.582 5.582
9 Si 0.828 3.172
10 H -0.194 1.194
11 H -0.204 1.204
12 H -0.183 1.183
13 C -0.049 4.049
14 N -0.184 5.184
15 C -0.083 4.083
16 C -0.149 4.149
17 C -0.127 4.127
18 C 0.009 3.991
19 F -0.116 7.116
20 H 0.076 0.924
21 H 0.094 0.906
22 H 0.068 0.932
23 H 0.069 0.931
24 H 0.205 0.795
25 H 0.213 0.787
26 H 0.203 0.797
Dipole moment (debyes) X Y Z Total
from point charges -0.599 1.603 -13.951 14.056
hybrid contribution 0.375 1.169 0.305 1.265
sum -0.225 2.772 -13.646 13.927
Atomic orbital electron populations
1.22073 0.94575 1.01895 1.01928 1.20778 0.94720 0.93414 0.84567
0.92973 1.85767 1.84297 1.34658 1.17478 1.21443 1.43475 0.91625
0.89438 0.90982 1.26230 0.98228 0.97542 1.01416 1.70236 1.47937
1.11610 1.28409 0.84758 0.78190 0.77602 0.76661 1.19389 1.20355
1.18312 1.21408 0.97854 0.90736 0.94924 1.67557 1.15940 1.07823
1.27074 1.23604 0.94110 1.02306 0.88251 1.22573 0.98066 0.93400
1.00866 1.22052 0.98017 0.95979 0.96691 1.18769 1.04454 0.77907
0.97930 1.91461 1.94518 1.28939 1.96638 0.92381 0.90559 0.93157
0.93139 0.79542 0.78730 0.79685
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -6.19 9.51 71.98 0.68 -5.50 15
2 C 0.12 6.08 3.00 29.85 0.09 6.17 15
3 H 0.05 2.51 6.92 -2.39 -0.02 2.50 15
4 O -0.31 -19.02 9.27 -81.91 -0.76 -19.78 15
5 C -0.38 -23.56 9.77 67.92 0.66 -22.90 15
6 H 0.07 4.14 7.65 -2.91 -0.02 4.12 15
7 C -0.04 -2.52 5.49 84.83 0.47 -2.05 15
8 N -0.94 -62.16 13.67 21.61 0.30 -61.87 15
9 Si 1.01 46.67 29.55 68.60 2.03 48.69 15
10 H -0.27 -11.84 7.11 99.48 0.71 -11.14 15
11 H -0.28 -12.53 7.11 99.48 0.71 -11.83 15
12 H -0.26 -11.19 7.11 99.48 0.71 -10.49 15
13 C 0.09 3.81 5.76 42.60 0.25 4.06 15
14 N -0.47 -20.03 10.10 -183.72 -1.86 -21.89 15
15 C 0.08 2.18 11.18 84.69 0.95 3.13 15
16 C -0.13 -2.68 10.11 22.35 0.23 -2.45 15
17 C -0.10 -2.39 10.16 22.51 0.23 -2.16 15
18 C 0.03 1.07 7.28 22.47 0.16 1.23 15
19 F -0.14 -4.73 16.28 44.97 0.73 -4.00 15
20 H 0.06 2.45 8.14 -2.39 -0.02 2.43 15
21 H 0.08 2.63 8.14 -2.39 -0.02 2.61 15
22 H 0.05 2.20 8.14 -2.39 -0.02 2.18 15
23 H 0.26 15.98 8.31 -92.71 -0.77 15.20 15
24 H 0.19 4.10 8.06 -2.91 -0.02 4.08 15
25 H 0.20 1.90 8.06 -2.91 -0.02 1.88 15
26 H 0.19 2.76 8.06 -2.91 -0.02 2.74 15
Total: -1.00 -80.38 243.94 5.34 -75.04
By element:
Atomic # 1 Polarization: 3.10 SS G_CDS: 1.18 Total: 4.28 kcal
Atomic # 6 Polarization: -24.19 SS G_CDS: 3.71 Total: -20.48 kcal
Atomic # 7 Polarization: -82.19 SS G_CDS: -1.56 Total: -83.75 kcal
Atomic # 8 Polarization: -19.02 SS G_CDS: -0.76 Total: -19.78 kcal
Atomic # 9 Polarization: -4.73 SS G_CDS: 0.73 Total: -4.00 kcal
Atomic # 14 Polarization: 46.67 SS G_CDS: 2.03 Total: 48.69 kcal
Total: -80.38 5.34 -75.04 kcal
The number of atoms in the molecule is 26
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001224381382.mol2 26
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 7.495 kcal
(2) G-P(sol) polarization free energy of solvation -80.375 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.880 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.337 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.038 kcal
(6) G-S(sol) free energy of system = (1) + (5) -67.542 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.16 seconds