Wall clock time and date at job start Sun Mar 29 2020 22:01:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.47045 * 2 1 4 4 O 1.42898 * 109.46877 * 120.00032 * 2 1 3 5 5 C 1.34922 * 117.00221 * 269.99851 * 4 2 1 6 6 H 1.08007 * 119.99963 * 359.97438 * 5 4 2 7 7 C 1.38637 * 120.00346 * 180.02562 * 5 4 2 8 8 N 1.31577 * 119.99928 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00024 * 179.97438 * 7 5 4 10 10 H 1.48508 * 109.46897 * 90.00344 * 9 7 5 11 11 H 1.48503 * 109.47409 * 209.99832 * 9 7 5 12 12 H 1.48494 * 109.47470 * 330.00446 * 9 7 5 13 13 C 1.50703 * 109.46867 * 239.99895 * 2 1 3 14 14 N 1.31865 * 119.63513 * 284.97656 * 13 2 1 15 15 C 1.31845 * 121.75130 * 179.67786 * 14 13 2 16 16 C 1.38238 * 120.81726 * 0.64271 * 15 14 13 17 17 C 1.38588 * 119.18753 * 359.39683 * 16 15 14 18 18 C 1.38413 * 119.63374 * 105.00191 * 13 2 1 19 19 F 1.35100 * 120.44698 * 0.02562 * 18 13 2 20 20 H 1.09004 * 109.46980 * 299.99876 * 1 2 3 21 21 H 1.08997 * 109.47227 * 59.99824 * 1 2 3 22 22 H 1.08998 * 109.47506 * 179.97438 * 1 2 3 23 23 H 0.97000 * 120.00386 * 179.97438 * 8 7 5 24 24 H 1.08000 * 119.59832 * 180.33717 * 15 14 13 25 25 H 1.08002 * 120.40978 * 179.67953 * 16 15 14 26 26 H 1.07999 * 120.80386 * 180.30037 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.2105 0.0787 2.2680 6 1 2.0149 1.1405 2.2405 7 6 2.6724 -0.5110 3.4346 8 7 2.9113 -1.8045 3.4680 9 14 2.9558 0.5307 4.9590 10 1 1.7110 0.5734 5.7677 11 1 4.0511 -0.0625 5.7675 12 1 3.3304 1.9094 4.5539 13 6 2.0323 -0.7105 -1.2305 14 7 1.9704 -2.0261 -1.2947 15 6 2.3919 -2.6896 -2.3532 16 6 2.9309 -2.0238 -3.4381 17 6 3.0139 -0.6407 -3.4092 18 6 2.5540 0.0252 -2.2805 19 9 2.6157 1.3728 -2.2081 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3634 -1.0276 -0.0005 23 1 3.2348 -2.2171 4.2840 24 1 2.3197 -3.7671 -2.3709 25 1 3.2789 -2.5743 -4.2997 26 1 3.4258 -0.0938 -4.2444 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224381382.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:57 Heat of formation + Delta-G solvation = -67.542473 kcal Electronic energy + Delta-G solvation = -13613.514787 eV Core-core repulsion = 10992.572417 eV Total energy + Delta-G solvation = -2620.942370 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 211.075 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -50.03807 -41.08922 -38.49823 -34.55360 -33.35080 -32.67015 -30.40582 -26.89575 -25.51797 -24.34244 -22.27617 -19.82376 -18.59912 -18.26300 -17.75040 -16.88761 -16.76158 -15.86798 -15.53190 -15.20223 -14.89250 -14.24818 -14.16502 -14.03401 -13.45557 -13.36079 -13.05777 -12.82943 -12.31713 -12.05303 -11.71689 -11.21068 -10.84132 -10.43293 -10.14440 -9.84229 -8.15839 -5.86241 -0.08723 0.18534 1.38607 1.45917 1.54851 2.31501 2.67132 2.98558 3.15337 3.41294 3.44054 3.79179 4.01538 4.10586 4.27188 4.42786 4.53091 4.71216 4.78824 4.91498 5.00272 5.04118 5.21334 5.27077 5.68941 6.21126 7.02322 7.25513 8.05514 9.08545 Molecular weight = 211.07amu Principal moments of inertia in cm(-1) A = 0.042664 B = 0.008809 C = 0.008237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.129665 B = 3177.933706 C = 3398.470788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.125 3.875 3 H 0.052 0.948 4 O -0.307 6.307 5 C -0.381 4.381 6 H 0.073 0.927 7 C -0.041 4.041 8 N -0.937 5.937 9 Si 1.006 2.994 10 H -0.268 1.268 11 H -0.278 1.278 12 H -0.259 1.259 13 C 0.089 3.911 14 N -0.475 5.475 15 C 0.075 3.925 16 C -0.130 4.130 17 C -0.101 4.101 18 C 0.031 3.969 19 F -0.137 7.137 20 H 0.057 0.943 21 H 0.076 0.924 22 H 0.049 0.951 23 H 0.260 0.740 24 H 0.188 0.812 25 H 0.196 0.804 26 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.336 2.311 -14.763 14.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.065 3.935 3 H 0.070 0.930 4 O -0.222 6.222 5 C -0.460 4.460 6 H 0.090 0.910 7 C -0.234 4.234 8 N -0.582 5.582 9 Si 0.828 3.172 10 H -0.194 1.194 11 H -0.204 1.204 12 H -0.183 1.183 13 C -0.049 4.049 14 N -0.184 5.184 15 C -0.083 4.083 16 C -0.149 4.149 17 C -0.127 4.127 18 C 0.009 3.991 19 F -0.116 7.116 20 H 0.076 0.924 21 H 0.094 0.906 22 H 0.068 0.932 23 H 0.069 0.931 24 H 0.205 0.795 25 H 0.213 0.787 26 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -0.599 1.603 -13.951 14.056 hybrid contribution 0.375 1.169 0.305 1.265 sum -0.225 2.772 -13.646 13.927 Atomic orbital electron populations 1.22073 0.94575 1.01895 1.01928 1.20778 0.94720 0.93414 0.84567 0.92973 1.85767 1.84297 1.34658 1.17478 1.21443 1.43475 0.91625 0.89438 0.90982 1.26230 0.98228 0.97542 1.01416 1.70236 1.47937 1.11610 1.28409 0.84758 0.78190 0.77602 0.76661 1.19389 1.20355 1.18312 1.21408 0.97854 0.90736 0.94924 1.67557 1.15940 1.07823 1.27074 1.23604 0.94110 1.02306 0.88251 1.22573 0.98066 0.93400 1.00866 1.22052 0.98017 0.95979 0.96691 1.18769 1.04454 0.77907 0.97930 1.91461 1.94518 1.28939 1.96638 0.92381 0.90559 0.93157 0.93139 0.79542 0.78730 0.79685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.19 9.51 71.98 0.68 -5.50 15 2 C 0.12 6.08 3.00 29.85 0.09 6.17 15 3 H 0.05 2.51 6.92 -2.39 -0.02 2.50 15 4 O -0.31 -19.02 9.27 -81.91 -0.76 -19.78 15 5 C -0.38 -23.56 9.77 67.92 0.66 -22.90 15 6 H 0.07 4.14 7.65 -2.91 -0.02 4.12 15 7 C -0.04 -2.52 5.49 84.83 0.47 -2.05 15 8 N -0.94 -62.16 13.67 21.61 0.30 -61.87 15 9 Si 1.01 46.67 29.55 68.60 2.03 48.69 15 10 H -0.27 -11.84 7.11 99.48 0.71 -11.14 15 11 H -0.28 -12.53 7.11 99.48 0.71 -11.83 15 12 H -0.26 -11.19 7.11 99.48 0.71 -10.49 15 13 C 0.09 3.81 5.76 42.60 0.25 4.06 15 14 N -0.47 -20.03 10.10 -183.72 -1.86 -21.89 15 15 C 0.08 2.18 11.18 84.69 0.95 3.13 15 16 C -0.13 -2.68 10.11 22.35 0.23 -2.45 15 17 C -0.10 -2.39 10.16 22.51 0.23 -2.16 15 18 C 0.03 1.07 7.28 22.47 0.16 1.23 15 19 F -0.14 -4.73 16.28 44.97 0.73 -4.00 15 20 H 0.06 2.45 8.14 -2.39 -0.02 2.43 15 21 H 0.08 2.63 8.14 -2.39 -0.02 2.61 15 22 H 0.05 2.20 8.14 -2.39 -0.02 2.18 15 23 H 0.26 15.98 8.31 -92.71 -0.77 15.20 15 24 H 0.19 4.10 8.06 -2.91 -0.02 4.08 15 25 H 0.20 1.90 8.06 -2.91 -0.02 1.88 15 26 H 0.19 2.76 8.06 -2.91 -0.02 2.74 15 Total: -1.00 -80.38 243.94 5.34 -75.04 By element: Atomic # 1 Polarization: 3.10 SS G_CDS: 1.18 Total: 4.28 kcal Atomic # 6 Polarization: -24.19 SS G_CDS: 3.71 Total: -20.48 kcal Atomic # 7 Polarization: -82.19 SS G_CDS: -1.56 Total: -83.75 kcal Atomic # 8 Polarization: -19.02 SS G_CDS: -0.76 Total: -19.78 kcal Atomic # 9 Polarization: -4.73 SS G_CDS: 0.73 Total: -4.00 kcal Atomic # 14 Polarization: 46.67 SS G_CDS: 2.03 Total: 48.69 kcal Total: -80.38 5.34 -75.04 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224381382.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.495 kcal (2) G-P(sol) polarization free energy of solvation -80.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds