Wall clock time and date at job start Sun Mar 29 2020 22:02:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47258 * 2 1 4 4 O 1.42902 * 109.47004 * 120.00050 * 2 1 3 5 5 C 1.34925 * 116.99891 * 269.99814 * 4 2 1 6 6 H 1.08002 * 120.00399 * 0.02562 * 5 4 2 7 7 C 1.38642 * 119.99741 * 179.72203 * 5 4 2 8 8 N 1.31586 * 119.99639 * 180.27780 * 7 5 4 9 9 Si 1.86800 * 119.99879 * 0.28124 * 7 5 4 10 10 H 1.48498 * 109.47109 * 90.00032 * 9 7 5 11 11 H 1.48507 * 109.46754 * 209.99772 * 9 7 5 12 12 H 1.48498 * 109.47278 * 329.99603 * 9 7 5 13 13 C 1.50699 * 109.47541 * 239.99976 * 2 1 3 14 14 C 1.38630 * 120.80220 * 264.72327 * 13 2 1 15 15 C 1.38192 * 119.19319 * 179.79500 * 14 13 2 16 16 N 1.31884 * 120.81951 * 0.48785 * 15 14 13 17 17 C 1.31833 * 121.74850 * 359.74008 * 16 15 14 18 18 C 1.38467 * 120.72750 * 0.02562 * 17 16 15 19 19 F 1.35105 * 120.44333 * 179.97438 * 18 17 16 20 20 H 1.08993 * 109.47361 * 299.99925 * 1 2 3 21 21 H 1.08999 * 109.46960 * 59.99990 * 1 2 3 22 22 H 1.08995 * 109.46943 * 179.97438 * 1 2 3 23 23 H 0.96996 * 119.99486 * 180.02562 * 8 7 5 24 24 H 1.07999 * 120.40218 * 0.02562 * 14 13 2 25 25 H 1.07997 * 119.58963 * 180.25023 * 15 14 13 26 26 H 1.07999 * 119.63881 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.2105 0.0787 2.2680 6 1 2.0141 1.1404 2.2408 7 6 2.6665 -0.5121 3.4364 8 7 2.8604 0.2208 4.5119 9 14 3.0056 -2.3485 3.4837 10 1 4.4174 -2.6012 3.0986 11 1 2.7679 -2.8604 4.8573 12 1 2.1011 -3.0436 2.5330 13 6 2.0324 -0.7104 -1.2304 14 6 2.3723 -2.0536 -1.1855 15 6 2.8255 -2.6730 -2.3348 16 7 2.9455 -2.0000 -3.4626 17 6 2.6366 -0.7209 -3.5435 18 6 2.1715 -0.0340 -2.4348 19 9 1.8571 1.2770 -2.5240 20 1 -0.3634 0.5138 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 3.1798 -0.1926 5.3293 24 1 2.2806 -2.6102 -0.2646 25 1 3.0882 -3.7202 -2.3081 26 1 2.7476 -0.2031 -4.4847 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224381911.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:06 Heat of formation + Delta-G solvation = -47.825772 kcal Electronic energy + Delta-G solvation = -13667.554371 eV Core-core repulsion = 11047.466981 eV Total energy + Delta-G solvation = -2620.087390 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 211.075 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -48.80439 -39.91235 -37.13928 -33.29518 -31.69974 -30.75664 -29.46352 -24.96375 -23.99163 -23.09924 -20.79668 -18.06492 -17.39364 -16.84210 -16.34745 -15.65675 -15.26350 -14.14305 -13.95076 -13.84629 -13.51332 -13.23108 -13.16367 -12.26603 -12.04393 -11.90936 -11.45008 -11.10364 -10.78555 -10.20598 -9.99538 -9.46878 -9.39811 -9.26742 -8.81860 -8.28993 -6.07782 -3.76913 1.06770 1.26134 3.34722 3.38100 3.50360 3.77704 4.15816 4.46644 4.48826 4.62078 4.91256 5.06427 5.22494 5.33739 5.60955 5.80158 5.85290 5.92870 5.99389 6.19339 6.43607 6.51791 6.66875 6.79040 7.81783 7.90589 8.27332 9.30784 9.79516 11.04659 Molecular weight = 211.07amu Principal moments of inertia in cm(-1) A = 0.038287 B = 0.010235 C = 0.008764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.134456 B = 2734.997021 C = 3194.211848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.140 3.860 3 H 0.067 0.933 4 O -0.318 6.318 5 C -0.360 4.360 6 H 0.082 0.918 7 C 0.047 3.953 8 N -0.910 5.910 9 Si 0.904 3.096 10 H -0.280 1.280 11 H -0.290 1.290 12 H -0.264 1.264 13 C -0.059 4.059 14 C -0.117 4.117 15 C 0.080 3.920 16 N -0.468 5.468 17 C 0.066 3.934 18 C 0.048 3.952 19 F -0.130 7.130 20 H 0.070 0.930 21 H 0.051 0.949 22 H 0.057 0.943 23 H 0.270 0.730 24 H 0.152 0.848 25 H 0.161 0.839 26 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.151 -3.524 -12.725 13.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.080 3.920 3 H 0.085 0.915 4 O -0.234 6.234 5 C -0.438 4.438 6 H 0.099 0.901 7 C -0.151 4.151 8 N -0.555 5.555 9 Si 0.732 3.268 10 H -0.206 1.206 11 H -0.216 1.216 12 H -0.188 1.188 13 C -0.068 4.068 14 C -0.137 4.137 15 C -0.076 4.076 16 N -0.177 5.177 17 C -0.092 4.092 18 C 0.026 3.974 19 F -0.109 7.109 20 H 0.089 0.911 21 H 0.070 0.930 22 H 0.076 0.924 23 H 0.080 0.920 24 H 0.170 0.830 25 H 0.179 0.821 26 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -1.777 -4.129 -13.308 14.047 hybrid contribution -0.182 0.165 0.946 0.977 sum -1.959 -3.963 -12.362 13.129 Atomic orbital electron populations 1.22222 0.95682 1.02204 1.01819 1.20376 0.93111 0.94697 0.83770 0.91545 1.85229 1.84661 1.35489 1.18001 1.20405 1.43688 0.92478 0.87261 0.90060 1.24295 0.97566 0.99186 0.94044 1.69679 1.48417 1.35775 1.01588 0.86210 0.78838 0.84940 0.76854 1.20644 1.21597 1.18848 1.20749 0.96512 0.95043 0.94455 1.22098 0.97040 0.94089 1.00463 1.22825 0.96529 1.00420 0.87849 1.67659 1.14672 1.07300 1.28034 1.22735 0.97992 0.91023 0.97487 1.18638 1.03650 0.79426 0.95676 1.91496 1.90589 1.32089 1.96725 0.91053 0.93042 0.92368 0.91978 0.83028 0.82138 0.81948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.89 9.51 37.16 0.35 -2.54 15 2 C 0.14 2.86 2.81 -27.88 -0.08 2.78 15 3 H 0.07 1.41 7.53 -51.93 -0.39 1.02 15 4 O -0.32 -7.91 7.18 -16.50 -0.12 -8.03 15 5 C -0.36 -10.24 10.23 30.88 0.32 -9.92 15 6 H 0.08 2.43 7.88 -52.49 -0.41 2.01 15 7 C 0.05 1.35 5.49 -17.51 -0.10 1.26 15 8 N -0.91 -27.64 13.97 55.48 0.77 -26.87 15 9 Si 0.90 22.29 28.62 -169.99 -4.86 17.42 15 10 H -0.28 -6.83 7.11 56.52 0.40 -6.42 15 11 H -0.29 -7.02 7.11 56.52 0.40 -6.62 15 12 H -0.26 -6.29 7.11 56.52 0.40 -5.89 15 13 C -0.06 -1.05 5.10 -104.26 -0.53 -1.58 15 14 C -0.12 -1.94 9.43 -39.45 -0.37 -2.31 15 15 C 0.08 1.14 11.18 -17.55 -0.20 0.94 15 16 N -0.47 -6.91 10.36 -13.20 -0.14 -7.05 15 17 C 0.07 0.93 11.17 -17.47 -0.20 0.73 15 18 C 0.05 0.76 7.29 -39.28 -0.29 0.48 15 19 F -0.13 -2.08 16.70 2.25 0.04 -2.04 15 20 H 0.07 1.34 8.14 -51.93 -0.42 0.91 15 21 H 0.05 0.80 8.14 -51.93 -0.42 0.37 15 22 H 0.06 1.00 8.14 -51.93 -0.42 0.58 15 23 H 0.27 7.68 8.31 -40.82 -0.34 7.34 15 24 H 0.15 2.60 7.45 -52.49 -0.39 2.21 15 25 H 0.16 1.76 8.06 -52.49 -0.42 1.33 15 26 H 0.16 1.76 8.06 -52.49 -0.42 1.34 15 LS Contribution 242.08 15.07 3.65 3.65 Total: -1.00 -30.69 242.08 -4.19 -34.88 By element: Atomic # 1 Polarization: 0.64 SS G_CDS: -2.44 Total: -1.81 kcal Atomic # 6 Polarization: -9.08 SS G_CDS: -1.09 Total: -10.16 kcal Atomic # 7 Polarization: -34.55 SS G_CDS: 0.64 Total: -33.91 kcal Atomic # 8 Polarization: -7.91 SS G_CDS: -0.12 Total: -8.03 kcal Atomic # 9 Polarization: -2.08 SS G_CDS: 0.04 Total: -2.04 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -4.86 Total: 17.42 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -30.69 -4.19 -34.88 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224381911.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.945 kcal (2) G-P(sol) polarization free energy of solvation -30.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds