Wall clock time and date at job start Sun Mar 29 2020 22:02:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47258 * 2 1 4 4 O 1.42902 * 109.47004 * 120.00050 * 2 1 3 5 5 C 1.34925 * 116.99891 * 269.99814 * 4 2 1 6 6 H 1.08002 * 120.00399 * 0.02562 * 5 4 2 7 7 C 1.38642 * 119.99741 * 179.72203 * 5 4 2 8 8 N 1.31574 * 119.99840 * 0.27848 * 7 5 4 9 9 Si 1.86803 * 119.99885 * 180.27983 * 7 5 4 10 10 H 1.48498 * 109.47174 * 90.00166 * 9 7 5 11 11 H 1.48494 * 109.46800 * 210.00214 * 9 7 5 12 12 H 1.48504 * 109.46913 * 329.99916 * 9 7 5 13 13 C 1.50699 * 109.47541 * 239.99976 * 2 1 3 14 14 C 1.38541 * 120.43131 * 264.72914 * 13 2 1 15 15 C 1.38716 * 118.45189 * 179.73309 * 14 13 2 16 16 C 1.38142 * 119.21896 * 0.55835 * 15 14 13 17 17 N 1.31912 * 120.79729 * 359.69906 * 16 15 14 18 18 C 1.32052 * 121.68918 * 0.02562 * 17 16 15 19 19 F 1.35105 * 119.65047 * 179.97438 * 18 17 16 20 20 H 1.08995 * 109.46943 * 179.97438 * 1 2 3 21 21 H 1.08993 * 109.47361 * 299.99925 * 1 2 3 22 22 H 1.08999 * 109.46960 * 59.99990 * 1 2 3 23 23 H 0.97005 * 119.99691 * 179.97438 * 8 7 5 24 24 H 1.08002 * 120.77366 * 359.97438 * 14 13 2 25 25 H 1.07994 * 120.38780 * 180.25591 * 15 14 13 26 26 H 1.08000 * 119.60107 * 179.68366 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.2105 0.0787 2.2680 6 1 2.0141 1.1404 2.2408 7 6 2.6665 -0.5121 3.4364 8 7 2.9053 -1.8056 3.4697 9 14 2.9418 0.5282 4.9633 10 1 1.6928 0.5700 5.7656 11 1 4.0330 -0.0657 5.7767 12 1 3.3183 1.9073 4.5613 13 6 2.0324 -0.7104 -1.2304 14 6 2.3698 -2.0530 -1.1769 15 6 2.8226 -2.6673 -2.3353 16 6 2.9329 -1.9235 -3.4941 17 7 2.6082 -0.6451 -3.5096 18 6 2.1686 -0.0279 -2.4282 19 9 1.8482 1.2831 -2.4905 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3634 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 3.2247 -2.2189 4.2871 24 1 2.2788 -2.6094 -0.2557 25 1 3.0902 -3.7136 -2.3300 26 1 3.2896 -2.3943 -4.3983 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224383639.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:00 Heat of formation + Delta-G solvation = -44.171223 kcal Electronic energy + Delta-G solvation = -13621.616449 eV Core-core repulsion = 11001.687532 eV Total energy + Delta-G solvation = -2619.928917 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 211.075 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -48.67181 -39.75462 -36.82028 -33.07588 -31.68526 -31.00341 -28.82334 -24.84421 -23.91841 -23.01700 -20.70047 -17.96257 -17.57450 -16.61696 -15.91459 -15.68336 -14.86092 -14.24751 -14.00333 -13.50909 -13.32747 -12.90401 -12.73357 -12.39135 -12.08684 -11.53666 -11.28109 -11.04800 -10.59441 -10.27759 -10.01291 -9.45974 -9.36725 -9.22827 -8.54316 -8.07212 -6.03578 -3.67072 1.20149 1.48787 3.27570 3.30838 3.34349 3.83659 3.90935 4.23909 4.86880 4.95806 5.19555 5.27187 5.31679 5.54336 5.82476 5.97512 6.01810 6.08568 6.38601 6.40555 6.69346 6.71049 6.80923 6.96237 7.41325 7.86622 8.35263 9.40385 10.02542 11.17213 Molecular weight = 211.07amu Principal moments of inertia in cm(-1) A = 0.044373 B = 0.008741 C = 0.007946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.856221 B = 3202.347547 C = 3523.001377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.132 3.868 3 H 0.057 0.943 4 O -0.281 6.281 5 C -0.362 4.362 6 H 0.065 0.935 7 C 0.026 3.974 8 N -0.889 5.889 9 Si 0.925 3.075 10 H -0.280 1.280 11 H -0.283 1.283 12 H -0.275 1.275 13 C -0.135 4.135 14 C -0.018 4.018 15 C -0.187 4.187 16 C 0.116 3.884 17 N -0.521 5.521 18 C 0.299 3.701 19 F -0.116 7.116 20 H 0.057 0.943 21 H 0.065 0.935 22 H 0.046 0.954 23 H 0.259 0.741 24 H 0.159 0.841 25 H 0.140 0.860 26 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.541 -0.487 -9.298 9.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.072 3.928 3 H 0.075 0.925 4 O -0.196 6.196 5 C -0.440 4.440 6 H 0.083 0.917 7 C -0.173 4.173 8 N -0.532 5.532 9 Si 0.752 3.248 10 H -0.207 1.207 11 H -0.209 1.209 12 H -0.200 1.200 13 C -0.139 4.139 14 C -0.043 4.043 15 C -0.207 4.207 16 C -0.041 4.041 17 N -0.235 5.235 18 C 0.145 3.855 19 F -0.095 7.095 20 H 0.076 0.924 21 H 0.084 0.916 22 H 0.065 0.935 23 H 0.069 0.931 24 H 0.177 0.823 25 H 0.158 0.842 26 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -1.383 -0.271 -9.947 10.046 hybrid contribution 0.000 0.532 1.468 1.562 sum -1.382 0.261 -8.478 8.594 Atomic orbital electron populations 1.22224 0.96370 1.02020 1.01160 1.20409 0.92799 0.94416 0.85203 0.92524 1.85633 1.83776 1.33585 1.16588 1.20869 1.43918 0.91065 0.88194 0.91694 1.24922 0.98588 0.96082 0.97692 1.69993 1.46676 1.09180 1.27340 0.85958 0.77958 0.79156 0.81687 1.20653 1.20869 1.19978 1.20930 1.01951 0.95926 0.95050 1.21632 0.90541 0.93158 0.99010 1.22217 1.02822 1.01957 0.93738 1.22368 0.95799 0.87656 0.98243 1.66942 1.14476 1.12478 1.29627 1.17919 0.97800 0.79530 0.90201 1.91576 1.89719 1.31489 1.96716 0.92436 0.91615 0.93464 0.93130 0.82319 0.84202 0.82183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.06 9.51 37.16 0.35 -2.71 15 2 C 0.13 2.88 2.77 -27.88 -0.08 2.81 15 3 H 0.06 1.26 7.46 -51.93 -0.39 0.87 15 4 O -0.28 -7.59 8.33 -16.50 -0.14 -7.72 15 5 C -0.36 -10.24 9.77 30.88 0.30 -9.94 15 6 H 0.07 1.75 7.65 -52.49 -0.40 1.35 15 7 C 0.03 0.73 5.49 -17.51 -0.10 0.63 15 8 N -0.89 -26.79 13.67 55.48 0.76 -26.03 15 9 Si 0.93 21.62 29.55 -169.99 -5.02 16.59 15 10 H -0.28 -6.41 7.11 56.52 0.40 -6.01 15 11 H -0.28 -6.54 7.11 56.52 0.40 -6.14 15 12 H -0.27 -6.23 7.11 56.52 0.40 -5.82 15 13 C -0.14 -2.65 5.09 -104.41 -0.53 -3.18 15 14 C -0.02 -0.32 9.47 -39.29 -0.37 -0.70 15 15 C -0.19 -2.66 10.11 -39.44 -0.40 -3.06 15 16 C 0.12 1.62 11.18 -17.55 -0.20 1.42 15 17 N -0.52 -8.98 10.37 -13.59 -0.14 -9.13 15 18 C 0.30 5.58 8.36 -17.35 -0.15 5.44 15 19 F -0.12 -2.16 16.60 2.25 0.04 -2.12 15 20 H 0.06 1.08 8.14 -51.93 -0.42 0.66 15 21 H 0.06 1.27 8.14 -51.93 -0.42 0.85 15 22 H 0.05 0.79 8.14 -51.93 -0.42 0.36 15 23 H 0.26 7.31 8.31 -40.82 -0.34 6.97 15 24 H 0.16 3.12 7.44 -52.49 -0.39 2.73 15 25 H 0.14 1.51 8.06 -52.49 -0.42 1.09 15 26 H 0.16 1.58 8.06 -52.49 -0.42 1.16 15 LS Contribution 243.00 15.07 3.66 3.66 Total: -1.00 -31.52 243.00 -4.43 -35.95 By element: Atomic # 1 Polarization: 0.49 SS G_CDS: -2.43 Total: -1.94 kcal Atomic # 6 Polarization: -8.11 SS G_CDS: -1.16 Total: -9.27 kcal Atomic # 7 Polarization: -35.77 SS G_CDS: 0.62 Total: -35.15 kcal Atomic # 8 Polarization: -7.59 SS G_CDS: -0.14 Total: -7.72 kcal Atomic # 9 Polarization: -2.16 SS G_CDS: 0.04 Total: -2.12 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -31.52 -4.43 -35.95 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224383639.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.219 kcal (2) G-P(sol) polarization free energy of solvation -31.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds