Wall clock time and date at job start Sun Mar 29 2020 22:02:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47258 * 2 1 4 4 O 1.42902 * 109.47004 * 120.00050 * 2 1 3 5 5 C 1.34925 * 116.99891 * 269.99814 * 4 2 1 6 6 H 1.08002 * 120.00399 * 0.02562 * 5 4 2 7 7 C 1.38642 * 119.99741 * 179.72203 * 5 4 2 8 8 N 1.31574 * 119.99840 * 0.27848 * 7 5 4 9 9 Si 1.86803 * 119.99885 * 180.27983 * 7 5 4 10 10 H 1.48498 * 109.47174 * 90.00166 * 9 7 5 11 11 H 1.48494 * 109.46800 * 210.00214 * 9 7 5 12 12 H 1.48504 * 109.46913 * 329.99916 * 9 7 5 13 13 C 1.50699 * 109.47541 * 239.99976 * 2 1 3 14 14 C 1.38541 * 120.43131 * 264.72914 * 13 2 1 15 15 C 1.38716 * 118.45189 * 179.73309 * 14 13 2 16 16 C 1.38142 * 119.21896 * 0.55835 * 15 14 13 17 17 N 1.31912 * 120.79729 * 359.69906 * 16 15 14 18 18 C 1.32052 * 121.68918 * 0.02562 * 17 16 15 19 19 F 1.35105 * 119.65047 * 179.97438 * 18 17 16 20 20 H 1.08995 * 109.46943 * 179.97438 * 1 2 3 21 21 H 1.08993 * 109.47361 * 299.99925 * 1 2 3 22 22 H 1.08999 * 109.46960 * 59.99990 * 1 2 3 23 23 H 0.97005 * 119.99691 * 179.97438 * 8 7 5 24 24 H 1.08002 * 120.77366 * 359.97438 * 14 13 2 25 25 H 1.07994 * 120.38780 * 180.25591 * 15 14 13 26 26 H 1.08000 * 119.60107 * 179.68366 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.2105 0.0787 2.2680 6 1 2.0141 1.1404 2.2408 7 6 2.6665 -0.5121 3.4364 8 7 2.9053 -1.8056 3.4697 9 14 2.9418 0.5282 4.9633 10 1 1.6928 0.5700 5.7656 11 1 4.0330 -0.0657 5.7767 12 1 3.3183 1.9073 4.5613 13 6 2.0324 -0.7104 -1.2304 14 6 2.3698 -2.0530 -1.1769 15 6 2.8226 -2.6673 -2.3353 16 6 2.9329 -1.9235 -3.4941 17 7 2.6082 -0.6451 -3.5096 18 6 2.1686 -0.0279 -2.4282 19 9 1.8482 1.2831 -2.4905 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3634 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 3.2247 -2.2189 4.2871 24 1 2.2788 -2.6094 -0.2557 25 1 3.0902 -3.7136 -2.3300 26 1 3.2896 -2.3943 -4.3983 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224383639.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:00 Heat of formation + Delta-G solvation = -65.158715 kcal Electronic energy + Delta-G solvation = -13622.526535 eV Core-core repulsion = 11001.687532 eV Total energy + Delta-G solvation = -2620.839003 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 211.075 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -50.09383 -41.09838 -38.67222 -34.82170 -33.41263 -32.58073 -30.32544 -26.90545 -25.38152 -24.41500 -22.29176 -19.86693 -19.00797 -18.12650 -17.55418 -17.15250 -16.49887 -15.89707 -15.62945 -15.23798 -14.72964 -14.48703 -14.11836 -13.97901 -13.56302 -13.37135 -13.06349 -12.86043 -12.26811 -12.06653 -11.83246 -11.24218 -10.83792 -10.73193 -10.21570 -9.84179 -8.19037 -5.87434 -0.10610 0.14196 1.40473 1.45692 1.54664 2.29470 2.53735 2.61600 3.15002 3.37787 3.56733 3.84724 3.99599 4.21189 4.28286 4.42074 4.51076 4.75106 4.84759 4.95405 5.13314 5.20654 5.23220 5.31190 5.63997 6.20465 6.59635 7.24446 7.98060 9.04744 Molecular weight = 211.07amu Principal moments of inertia in cm(-1) A = 0.044373 B = 0.008741 C = 0.007946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.856221 B = 3202.347547 C = 3523.001377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.125 3.875 3 H 0.044 0.956 4 O -0.311 6.311 5 C -0.377 4.377 6 H 0.070 0.930 7 C -0.034 4.034 8 N -0.933 5.933 9 Si 1.000 3.000 10 H -0.270 1.270 11 H -0.278 1.278 12 H -0.263 1.263 13 C -0.157 4.157 14 C -0.037 4.037 15 C -0.166 4.166 16 C 0.130 3.870 17 N -0.531 5.531 18 C 0.286 3.714 19 F -0.122 7.122 20 H 0.056 0.944 21 H 0.057 0.943 22 H 0.071 0.929 23 H 0.261 0.739 24 H 0.134 0.866 25 H 0.182 0.818 26 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.160 -0.732 -10.334 10.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.066 3.934 3 H 0.062 0.938 4 O -0.226 6.226 5 C -0.455 4.455 6 H 0.088 0.912 7 C -0.228 4.228 8 N -0.578 5.578 9 Si 0.822 3.178 10 H -0.195 1.195 11 H -0.204 1.204 12 H -0.187 1.187 13 C -0.161 4.161 14 C -0.062 4.062 15 C -0.185 4.185 16 C -0.027 4.027 17 N -0.245 5.245 18 C 0.134 3.866 19 F -0.101 7.101 20 H 0.075 0.925 21 H 0.076 0.924 22 H 0.090 0.910 23 H 0.070 0.930 24 H 0.152 0.848 25 H 0.199 0.801 26 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -1.019 -0.496 -11.005 11.063 hybrid contribution -0.108 0.531 1.638 1.725 sum -1.127 0.035 -9.367 9.435 Atomic orbital electron populations 1.22112 0.94528 1.02193 1.01938 1.20590 0.94306 0.93857 0.84667 0.93766 1.85579 1.84460 1.34944 1.17638 1.21304 1.43650 0.91523 0.89071 0.91244 1.26066 0.98192 0.97491 1.01032 1.70147 1.47979 1.11197 1.28451 0.84837 0.78170 0.77678 0.77084 1.19548 1.20354 1.18740 1.20740 1.04134 0.96767 0.94454 1.21577 0.92119 0.92723 0.99826 1.22604 1.00185 1.03722 0.92001 1.23273 0.93227 0.86358 0.99812 1.67084 1.14671 1.14042 1.28740 1.17902 0.98836 0.79492 0.90392 1.91549 1.89914 1.31903 1.96761 0.92513 0.92390 0.90999 0.93000 0.84810 0.80103 0.77038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.83 9.51 71.98 0.68 -5.15 15 2 C 0.13 5.64 2.77 29.85 0.08 5.72 15 3 H 0.04 2.05 7.46 -2.39 -0.02 2.03 15 4 O -0.31 -17.40 8.33 -81.94 -0.68 -18.08 15 5 C -0.38 -21.85 9.77 67.92 0.66 -21.19 15 6 H 0.07 3.82 7.65 -2.91 -0.02 3.80 15 7 C -0.03 -1.96 5.49 84.83 0.47 -1.50 15 8 N -0.93 -57.45 13.67 21.61 0.30 -57.16 15 9 Si 1.00 44.52 29.55 68.60 2.03 46.55 15 10 H -0.27 -11.50 7.11 99.48 0.71 -10.79 15 11 H -0.28 -12.07 7.11 99.48 0.71 -11.36 15 12 H -0.26 -11.09 7.11 99.48 0.71 -10.39 15 13 C -0.16 -6.23 5.09 -19.72 -0.10 -6.33 15 14 C -0.04 -1.32 9.47 22.46 0.21 -1.11 15 15 C -0.17 -4.20 10.11 22.36 0.23 -3.97 15 16 C 0.13 3.11 11.18 84.66 0.95 4.06 15 17 N -0.53 -17.09 10.37 -196.92 -2.04 -19.13 15 18 C 0.29 10.54 8.36 84.73 0.71 11.25 15 19 F -0.12 -4.55 16.60 44.97 0.75 -3.80 15 20 H 0.06 2.17 8.14 -2.39 -0.02 2.15 15 21 H 0.06 2.29 8.14 -2.39 -0.02 2.27 15 22 H 0.07 2.39 8.14 -2.39 -0.02 2.37 15 23 H 0.26 15.00 8.31 -92.70 -0.77 14.23 15 24 H 0.13 5.47 7.44 -2.91 -0.02 5.45 15 25 H 0.18 3.07 8.06 -2.91 -0.02 3.05 15 26 H 0.21 2.87 8.06 -2.91 -0.02 2.85 15 Total: -1.00 -69.59 243.00 5.42 -64.17 By element: Atomic # 1 Polarization: 4.47 SS G_CDS: 1.18 Total: 5.65 kcal Atomic # 6 Polarization: -22.10 SS G_CDS: 3.89 Total: -18.21 kcal Atomic # 7 Polarization: -74.54 SS G_CDS: -1.75 Total: -76.29 kcal Atomic # 8 Polarization: -17.40 SS G_CDS: -0.68 Total: -18.08 kcal Atomic # 9 Polarization: -4.55 SS G_CDS: 0.75 Total: -3.80 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Total: -69.59 5.42 -64.17 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224383639.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.985 kcal (2) G-P(sol) polarization free energy of solvation -69.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds