Wall clock time and date at job start Sun Mar 29 2020 21:45:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99911 * 2 1 4 4 H 1.48496 * 109.46683 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.47426 * 300.00172 * 3 2 1 6 6 H 1.48501 * 109.46833 * 60.00415 * 3 2 1 7 7 C 1.37871 * 119.99684 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00205 * 179.72412 * 7 2 1 9 9 C 1.50706 * 120.00436 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47348 * 179.72505 * 9 7 2 11 11 C 1.52996 * 109.46929 * 179.97438 * 10 9 7 12 12 C 1.53008 * 109.46808 * 180.02562 * 11 10 9 13 13 O 1.42905 * 109.46671 * 180.02562 * 12 11 10 14 14 C 1.42904 * 113.99642 * 179.97438 * 13 12 11 15 15 H 1.08999 * 110.34380 * 27.71377 * 14 13 12 16 16 C 1.51101 * 110.38796 * 265.30284 * 14 13 12 17 17 C 1.30529 * 111.10123 * 224.75232 * 16 14 13 18 18 C 1.51100 * 111.10443 * 0.02562 * 17 16 14 19 19 C 1.54631 * 110.38602 * 149.99584 * 14 13 12 20 20 H 0.97004 * 120.00247 * 359.97438 * 1 2 3 21 21 H 1.09001 * 109.46564 * 299.72974 * 9 7 2 22 22 H 1.08998 * 109.47012 * 59.72028 * 9 7 2 23 23 H 1.09000 * 109.46986 * 300.00089 * 10 9 7 24 24 H 1.09002 * 109.46857 * 60.00224 * 10 9 7 25 25 H 1.09000 * 109.47441 * 299.99910 * 11 10 9 26 26 H 1.08994 * 109.47235 * 60.00181 * 11 10 9 27 27 H 1.08996 * 109.46961 * 299.99496 * 12 11 10 28 28 H 1.08994 * 109.47402 * 59.99882 * 12 11 10 29 29 H 1.07993 * 124.44753 * 44.72850 * 16 14 13 30 30 H 1.07999 * 124.44366 * 179.97438 * 17 16 14 31 31 H 1.09003 * 110.38507 * 257.62458 * 18 17 16 32 32 H 1.08998 * 110.38519 * 135.25081 * 18 17 16 33 33 H 1.08997 * 111.04037 * 261.47814 * 19 14 13 34 34 H 1.09001 * 111.03930 * 25.41746 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0044 -1.1940 -0.0005 8 1 3.0844 -1.1941 -0.0050 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0081 11 6 1.4801 -4.9871 -0.0075 12 6 2.4744 -6.1500 -0.0144 13 8 1.7597 -7.3876 -0.0144 14 6 2.5997 -8.5437 -0.0212 15 1 3.5565 -8.3197 0.4503 16 6 2.8088 -9.0340 -1.4351 17 6 2.6807 -10.3311 -1.5064 18 6 2.3641 -10.9218 -0.1522 19 6 1.9041 -9.7192 0.7037 20 1 -0.4851 0.8401 0.0004 21 1 0.6283 -2.5592 0.8921 22 1 0.6202 -2.5546 -0.8878 23 1 2.8677 -3.6020 -0.9008 24 1 2.8758 -3.6067 0.8792 25 1 0.8578 -5.0469 0.8854 26 1 0.8491 -5.0427 -0.8945 27 1 3.0969 -6.0904 -0.9071 28 1 3.1050 -6.0942 0.8728 29 1 3.0343 -8.3952 -2.2761 30 1 2.7862 -10.9063 -2.4144 31 1 3.2548 -11.3768 0.2811 32 1 1.5638 -11.6570 -0.2364 33 1 2.2587 -9.8107 1.7303 34 1 0.8199 -9.6105 0.6742 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224689823.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:45 Heat of formation + Delta-G solvation = -55.435866 kcal Electronic energy + Delta-G solvation = -13161.720323 eV Core-core repulsion = 10866.022245 eV Total energy + Delta-G solvation = -2295.698078 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.136 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.27157 -36.58377 -34.39185 -32.25540 -29.28110 -28.80083 -26.96197 -24.58812 -21.74105 -21.04832 -19.97523 -19.06898 -16.82012 -16.40155 -16.11939 -15.34444 -14.59995 -14.34968 -13.59773 -13.50321 -12.40421 -12.35015 -12.05342 -11.94536 -11.75664 -11.51322 -11.24703 -11.19676 -11.03826 -10.66493 -10.48146 -10.38623 -9.65045 -9.41903 -9.28747 -9.13078 -9.00023 -8.31800 -5.96562 -3.98916 2.03835 3.32947 3.40114 3.44378 3.89555 4.47085 4.47662 4.49539 4.92013 5.12644 5.22870 5.29928 5.38835 5.43604 5.53126 5.56539 5.72445 5.81532 5.92387 5.94660 6.15284 6.21435 6.29168 6.51671 6.66758 6.82015 6.95737 7.13997 7.44197 7.72502 7.87509 8.04379 8.46641 9.08685 9.64932 11.14866 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.097213 B = 0.004113 C = 0.004062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 287.957904 B = 6806.204961 C = 6891.587700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.520 4.520 8 H 0.055 0.945 9 C 0.020 3.980 10 C -0.108 4.108 11 C -0.116 4.116 12 C 0.061 3.939 13 O -0.377 6.377 14 C 0.105 3.895 15 H 0.071 0.929 16 C -0.179 4.179 17 C -0.164 4.164 18 C -0.101 4.101 19 C -0.122 4.122 20 H 0.259 0.741 21 H 0.016 0.984 22 H 0.017 0.983 23 H 0.048 0.952 24 H 0.048 0.952 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.045 0.955 28 H 0.045 0.955 29 H 0.125 0.875 30 H 0.125 0.875 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.633 -19.313 -0.359 20.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.558 4.558 8 H 0.073 0.927 9 C -0.017 4.017 10 C -0.145 4.145 11 C -0.154 4.154 12 C -0.015 4.015 13 O -0.297 6.297 14 C 0.047 3.953 15 H 0.089 0.911 16 C -0.197 4.197 17 C -0.183 4.183 18 C -0.138 4.138 19 C -0.159 4.159 20 H 0.069 0.931 21 H 0.035 0.965 22 H 0.035 0.965 23 H 0.066 0.934 24 H 0.066 0.934 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.143 0.857 30 H 0.142 0.858 31 H 0.094 0.906 32 H 0.091 0.909 33 H 0.095 0.905 34 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 5.283 -19.199 -0.345 19.916 hybrid contribution 0.758 1.025 -0.160 1.284 sum 6.041 -18.174 -0.504 19.159 Atomic orbital electron populations 1.69983 1.06051 1.26430 1.51047 1.25039 0.94855 0.99266 0.95422 0.86542 0.80096 0.83844 0.77557 1.19765 1.21028 1.21025 1.21316 0.93061 0.91148 1.50294 0.92674 1.19103 0.94022 0.91212 0.97348 1.21576 0.99174 0.93508 1.00268 1.21640 0.98097 0.92935 1.02732 1.22748 0.95417 0.83771 0.99560 1.87996 1.33522 1.13320 1.94815 1.21974 0.93967 0.86664 0.92685 0.91145 1.23788 1.00482 0.96750 0.98685 1.23202 1.00913 0.96055 0.98082 1.21342 1.01167 0.97911 0.93338 1.22610 1.02091 0.92586 0.98647 0.93085 0.96526 0.96509 0.93363 0.93361 0.91718 0.91720 0.93701 0.93655 0.85688 0.85753 0.90561 0.90879 0.90457 0.89737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.48 13.29 55.43 0.74 -26.74 16 2 C 0.05 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.96 29.54 -169.99 -5.02 16.94 16 4 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 7 C -0.52 -15.08 9.11 -34.44 -0.31 -15.39 16 8 H 0.05 1.55 7.74 -52.49 -0.41 1.14 16 9 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 10 C -0.11 -2.28 5.15 -26.73 -0.14 -2.41 16 11 C -0.12 -2.13 5.58 -26.73 -0.15 -2.28 16 12 C 0.06 0.95 5.78 37.16 0.21 1.16 16 13 O -0.38 -5.86 10.05 -35.23 -0.35 -6.21 16 14 C 0.11 1.29 3.38 -26.83 -0.09 1.20 16 15 H 0.07 0.80 7.81 -51.93 -0.41 0.39 16 16 C -0.18 -2.04 10.45 -35.70 -0.37 -2.42 16 17 C -0.16 -1.59 10.78 -35.70 -0.38 -1.97 16 18 C -0.10 -0.86 6.81 -26.84 -0.18 -1.04 16 19 C -0.12 -1.24 6.92 -25.02 -0.17 -1.42 16 20 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 21 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 22 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 23 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 24 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 25 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 26 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 27 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 28 H 0.05 0.66 8.11 -51.93 -0.42 0.23 16 29 H 0.13 1.40 8.06 -52.49 -0.42 0.97 16 30 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 31 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.08 0.93 8.11 -51.93 -0.42 0.51 16 LS Contribution 286.19 15.07 4.31 4.31 Total: -1.00 -31.05 286.19 -8.01 -39.06 By element: Atomic # 1 Polarization: 1.16 SS G_CDS: -5.86 Total: -4.71 kcal Atomic # 6 Polarization: -20.83 SS G_CDS: -1.83 Total: -22.66 kcal Atomic # 7 Polarization: -27.48 SS G_CDS: 0.74 Total: -26.74 kcal Atomic # 8 Polarization: -5.86 SS G_CDS: -0.35 Total: -6.21 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -31.05 -8.01 -39.06 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224689823.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.373 kcal (2) G-P(sol) polarization free energy of solvation -31.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds