Wall clock time and date at job start Sun Mar 29 2020 21:45:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99911 * 2 1 4 4 H 1.48496 * 109.46683 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.47426 * 300.00172 * 3 2 1 6 6 H 1.48501 * 109.46833 * 60.00415 * 3 2 1 7 7 C 1.37871 * 119.99684 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00205 * 179.72412 * 7 2 1 9 9 C 1.50706 * 120.00436 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47348 * 179.72505 * 9 7 2 11 11 C 1.52996 * 109.46929 * 179.97438 * 10 9 7 12 12 C 1.53008 * 109.46808 * 180.02562 * 11 10 9 13 13 O 1.42905 * 109.46671 * 180.02562 * 12 11 10 14 14 C 1.42904 * 113.99642 * 179.97438 * 13 12 11 15 15 H 1.08999 * 110.34380 * 27.71377 * 14 13 12 16 16 C 1.51101 * 110.38796 * 265.30284 * 14 13 12 17 17 C 1.30529 * 111.10123 * 224.75232 * 16 14 13 18 18 C 1.51100 * 111.10443 * 0.02562 * 17 16 14 19 19 C 1.54631 * 110.38602 * 149.99584 * 14 13 12 20 20 H 0.97004 * 120.00247 * 359.97438 * 1 2 3 21 21 H 1.09001 * 109.46564 * 299.72974 * 9 7 2 22 22 H 1.08998 * 109.47012 * 59.72028 * 9 7 2 23 23 H 1.09000 * 109.46986 * 300.00089 * 10 9 7 24 24 H 1.09002 * 109.46857 * 60.00224 * 10 9 7 25 25 H 1.09000 * 109.47441 * 299.99910 * 11 10 9 26 26 H 1.08994 * 109.47235 * 60.00181 * 11 10 9 27 27 H 1.08996 * 109.46961 * 299.99496 * 12 11 10 28 28 H 1.08994 * 109.47402 * 59.99882 * 12 11 10 29 29 H 1.07993 * 124.44753 * 44.72850 * 16 14 13 30 30 H 1.07999 * 124.44366 * 179.97438 * 17 16 14 31 31 H 1.09003 * 110.38507 * 257.62458 * 18 17 16 32 32 H 1.08998 * 110.38519 * 135.25081 * 18 17 16 33 33 H 1.08997 * 111.04037 * 261.47814 * 19 14 13 34 34 H 1.09001 * 111.03930 * 25.41746 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0044 -1.1940 -0.0005 8 1 3.0844 -1.1941 -0.0050 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0081 11 6 1.4801 -4.9871 -0.0075 12 6 2.4744 -6.1500 -0.0144 13 8 1.7597 -7.3876 -0.0144 14 6 2.5997 -8.5437 -0.0212 15 1 3.5565 -8.3197 0.4503 16 6 2.8088 -9.0340 -1.4351 17 6 2.6807 -10.3311 -1.5064 18 6 2.3641 -10.9218 -0.1522 19 6 1.9041 -9.7192 0.7037 20 1 -0.4851 0.8401 0.0004 21 1 0.6283 -2.5592 0.8921 22 1 0.6202 -2.5546 -0.8878 23 1 2.8677 -3.6020 -0.9008 24 1 2.8758 -3.6067 0.8792 25 1 0.8578 -5.0469 0.8854 26 1 0.8491 -5.0427 -0.8945 27 1 3.0969 -6.0904 -0.9071 28 1 3.1050 -6.0942 0.8728 29 1 3.0343 -8.3952 -2.2761 30 1 2.7862 -10.9063 -2.4144 31 1 3.2548 -11.3768 0.2811 32 1 1.5638 -11.6570 -0.2364 33 1 2.2587 -9.8107 1.7303 34 1 0.8199 -9.6105 0.6742 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224689823.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:44 Heat of formation + Delta-G solvation = -72.933678 kcal Electronic energy + Delta-G solvation = -13162.479085 eV Core-core repulsion = 10866.022245 eV Total energy + Delta-G solvation = -2296.456840 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.136 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.19439 -37.71406 -36.17003 -34.24792 -30.68393 -29.91152 -28.01800 -26.39347 -23.41941 -22.10966 -21.51559 -19.89568 -18.45054 -17.84256 -17.20594 -16.69051 -16.48804 -15.46707 -15.02761 -14.76279 -14.22421 -13.77585 -13.51251 -12.99285 -12.90721 -12.76081 -12.69513 -12.43632 -12.22561 -12.21910 -12.10834 -12.01414 -11.46182 -11.32949 -11.06852 -10.56917 -10.50762 -9.92232 -8.20295 -6.32113 1.24585 1.40152 1.40810 1.54396 2.40783 2.82171 3.12611 3.67617 3.71707 4.03842 4.07073 4.24381 4.35435 4.42490 4.46359 4.55665 4.61675 4.69100 4.84532 4.91785 4.97348 5.13678 5.17295 5.21255 5.25813 5.29198 5.52659 5.53448 5.74384 5.85164 5.88291 6.23884 6.34086 6.85451 7.37408 8.92066 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.097213 B = 0.004113 C = 0.004062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 287.957904 B = 6806.204961 C = 6891.587700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.004 4.004 3 Si 0.969 3.031 4 H -0.260 1.260 5 H -0.278 1.278 6 H -0.277 1.277 7 C -0.544 4.544 8 H 0.062 0.938 9 C 0.021 3.979 10 C -0.094 4.094 11 C -0.110 4.110 12 C 0.070 3.930 13 O -0.399 6.399 14 C 0.095 3.905 15 H 0.078 0.922 16 C -0.212 4.212 17 C -0.149 4.149 18 C -0.098 4.098 19 C -0.124 4.124 20 H 0.264 0.736 21 H -0.009 1.009 22 H -0.010 1.010 23 H 0.055 0.945 24 H 0.057 0.943 25 H 0.056 0.944 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.059 0.941 29 H 0.120 0.880 30 H 0.144 0.856 31 H 0.096 0.904 32 H 0.087 0.913 33 H 0.091 0.909 34 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.257 -20.214 -0.276 21.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.202 4.202 3 Si 0.793 3.207 4 H -0.184 1.184 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.582 4.582 8 H 0.081 0.919 9 C -0.016 4.016 10 C -0.132 4.132 11 C -0.147 4.147 12 C -0.006 4.006 13 O -0.319 6.319 14 C 0.038 3.962 15 H 0.096 0.904 16 C -0.230 4.230 17 C -0.166 4.166 18 C -0.135 4.135 19 C -0.161 4.161 20 H 0.072 0.928 21 H 0.009 0.991 22 H 0.008 0.992 23 H 0.074 0.926 24 H 0.076 0.924 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.138 0.862 30 H 0.162 0.838 31 H 0.114 0.886 32 H 0.106 0.894 33 H 0.110 0.890 34 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 6.917 -20.122 -0.262 21.280 hybrid contribution 0.205 1.227 -0.191 1.259 sum 7.122 -18.895 -0.453 20.198 Atomic orbital electron populations 1.70121 1.07928 1.27754 1.51775 1.26052 0.95817 1.03605 0.94705 0.85339 0.79076 0.78467 0.77798 1.18400 1.20342 1.20311 1.21760 0.93659 0.92336 1.50423 0.91934 1.19039 0.94543 0.93282 0.94775 1.21356 0.98034 0.92772 1.01022 1.21464 0.98318 0.93054 1.01885 1.22533 0.94329 0.83053 1.00664 1.87949 1.34861 1.14025 1.95066 1.22275 0.94163 0.85984 0.93803 0.90382 1.23786 1.03272 0.97657 0.98275 1.23534 0.98200 0.95574 0.99335 1.21408 1.02442 0.97385 0.92288 1.22669 1.01196 0.92523 0.99712 0.92755 0.99101 0.99194 0.92585 0.92429 0.92489 0.92745 0.92777 0.92305 0.86199 0.83844 0.88612 0.89434 0.89005 0.91033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.40 13.29 21.45 0.28 -58.11 16 2 C 0.00 -0.26 5.46 84.65 0.46 0.20 16 3 Si 0.97 44.93 29.54 68.60 2.03 46.96 16 4 H -0.26 -11.42 7.11 99.48 0.71 -10.72 16 5 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 6 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 7 C -0.54 -31.79 9.11 25.60 0.23 -31.56 16 8 H 0.06 3.48 7.74 -2.91 -0.02 3.45 16 9 C 0.02 1.14 4.97 29.85 0.15 1.29 16 10 C -0.09 -3.99 5.15 30.59 0.16 -3.83 16 11 C -0.11 -4.04 5.58 30.60 0.17 -3.87 16 12 C 0.07 2.12 5.78 71.98 0.42 2.54 16 13 O -0.40 -12.19 10.05 -148.98 -1.50 -13.69 16 14 C 0.09 2.22 3.38 30.53 0.10 2.32 16 15 H 0.08 1.65 7.81 -2.39 -0.02 1.63 16 16 C -0.21 -4.59 10.45 26.26 0.27 -4.32 16 17 C -0.15 -2.52 10.78 26.26 0.28 -2.24 16 18 C -0.10 -1.40 6.81 30.52 0.21 -1.20 16 19 C -0.12 -2.31 6.92 31.70 0.22 -2.10 16 20 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 21 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 22 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 23 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 24 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 25 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 26 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 27 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 28 H 0.06 1.61 8.11 -2.39 -0.02 1.59 16 29 H 0.12 2.64 8.06 -2.91 -0.02 2.61 16 30 H 0.14 1.85 8.06 -2.91 -0.02 1.82 16 31 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.07 1.52 8.11 -2.39 -0.02 1.50 16 Total: -1.00 -66.78 286.19 4.52 -62.26 By element: Atomic # 1 Polarization: 4.33 SS G_CDS: 1.03 Total: 5.36 kcal Atomic # 6 Polarization: -45.44 SS G_CDS: 2.68 Total: -42.77 kcal Atomic # 7 Polarization: -58.40 SS G_CDS: 0.28 Total: -58.11 kcal Atomic # 8 Polarization: -12.19 SS G_CDS: -1.50 Total: -13.69 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -66.78 4.52 -62.26 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224689823.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.677 kcal (2) G-P(sol) polarization free energy of solvation -66.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds