Wall clock time and date at job start Sun Mar 29 2020 21:44:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46905 * 109.46674 * 2 1 4 4 C 1.46891 * 111.00309 * 298.12494 * 3 2 1 5 5 C 1.50708 * 109.47379 * 292.93029 * 4 3 2 6 6 H 1.08001 * 119.99509 * 354.95950 * 5 4 3 7 7 C 1.37871 * 120.00034 * 174.95967 * 5 4 3 8 8 N 1.31516 * 120.00347 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 119.99775 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47054 * 89.99901 * 9 7 5 11 11 H 1.48503 * 109.47309 * 209.99887 * 9 7 5 12 12 H 1.48499 * 109.47194 * 330.00108 * 9 7 5 13 13 C 1.46896 * 110.99788 * 62.08221 * 3 2 1 14 14 C 1.50710 * 109.47608 * 66.04173 * 13 3 2 15 15 N 1.33232 * 125.52704 * 269.69764 * 14 13 3 16 16 C 1.30826 * 109.83001 * 180.26240 * 15 14 13 17 17 N 1.34431 * 108.07676 * 359.97438 * 16 15 14 18 18 H 0.96998 * 126.82222 * 180.02562 * 17 16 15 19 19 N 1.30708 * 125.52173 * 89.99851 * 14 13 3 20 20 H 1.08995 * 109.47107 * 299.65593 * 1 2 3 21 21 H 1.08997 * 109.47535 * 59.66166 * 1 2 3 22 22 H 1.08998 * 109.46556 * 179.65825 * 1 2 3 23 23 H 1.09001 * 109.47287 * 240.00162 * 2 1 3 24 24 H 1.08994 * 109.47213 * 120.00040 * 2 1 3 25 25 H 1.09008 * 109.47135 * 52.92901 * 4 3 2 26 26 H 1.08998 * 109.46956 * 172.92960 * 4 3 2 27 27 H 0.96998 * 119.99869 * 180.02562 * 8 7 5 28 28 H 1.09004 * 109.47264 * 306.04252 * 13 3 2 29 29 H 1.09002 * 109.47385 * 186.04032 * 13 3 2 30 30 H 1.08002 * 125.96520 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 1.5856 2.0969 -1.2094 5 6 2.2648 1.4997 -2.4149 6 1 3.0109 0.7292 -2.2878 7 6 1.9338 1.9369 -3.6798 8 7 1.0249 2.8748 -3.8346 9 14 2.7752 1.1961 -5.1740 10 1 1.9999 0.0211 -5.6470 11 1 2.8459 2.2106 -6.2562 12 1 4.1488 0.7675 -4.8069 13 6 1.5896 2.0953 1.2118 14 6 2.2535 1.4803 2.4169 15 7 1.7601 0.4811 3.1470 16 6 2.5847 0.1939 4.1212 17 7 3.6415 1.0197 4.0303 18 1 4.4142 1.0417 4.6162 19 7 3.4042 1.8446 2.9186 20 1 -0.3633 0.5085 0.8930 21 1 -0.3634 0.5191 -0.8869 22 1 -0.3632 -1.0277 -0.0061 23 1 1.8934 -0.5138 -0.8900 24 1 1.8934 -0.5138 0.8899 25 1 0.5049 2.0036 -1.3178 26 1 1.8528 3.1504 -1.1265 27 1 0.7918 3.1821 -4.7246 28 1 0.5072 2.0173 1.3140 29 1 1.8728 3.1453 1.1374 30 1 2.4414 -0.5728 4.8683 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237601598.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:23 Heat of formation + Delta-G solvation = 93.555186 kcal Electronic energy + Delta-G solvation = -13824.133169 eV Core-core repulsion = 11463.648236 eV Total energy + Delta-G solvation = -2360.484933 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.86517 -37.14976 -32.84909 -32.18258 -31.25079 -29.29914 -27.64449 -24.93554 -23.14097 -22.47809 -20.54702 -19.00752 -18.06872 -16.13489 -15.53532 -15.34254 -14.59909 -14.38565 -13.86329 -13.57980 -12.77170 -12.06386 -11.88438 -11.66236 -11.43209 -11.09111 -10.86338 -10.66443 -10.50343 -10.00529 -9.83753 -9.81011 -9.76722 -9.43231 -9.14040 -8.37641 -7.13974 -5.97143 -3.97499 1.81503 2.83982 3.12545 3.35910 3.41900 3.47021 4.32794 4.49282 4.93701 5.09706 5.30237 5.38564 5.95001 6.01253 6.09049 6.21115 6.33214 6.46276 6.60782 6.70200 6.80756 7.05007 7.17480 7.35900 7.50439 7.86590 8.13550 8.23855 8.34376 8.59713 9.10260 9.66080 11.13605 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.052350 B = 0.007347 C = 0.007152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 534.730347 B = 3809.954407 C = 3913.906409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.064 3.936 3 N -0.529 5.529 4 C 0.189 3.811 5 C -0.502 4.502 6 H 0.062 0.938 7 C 0.055 3.945 8 N -0.899 5.899 9 Si 0.896 3.104 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.137 3.863 14 C 0.252 3.748 15 N -0.538 5.538 16 C 0.249 3.751 17 N -0.494 5.494 18 H 0.437 0.563 19 N -0.303 5.303 20 H 0.049 0.951 21 H 0.065 0.935 22 H 0.045 0.955 23 H 0.077 0.923 24 H 0.054 0.946 25 H 0.007 0.993 26 H 0.027 0.973 27 H 0.261 0.739 28 H 0.059 0.941 29 H 0.089 0.911 30 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.763 -4.968 14.490 15.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.065 4.065 3 N -0.254 5.254 4 C 0.065 3.935 5 C -0.541 4.541 6 H 0.080 0.920 7 C -0.146 4.146 8 N -0.539 5.539 9 Si 0.724 3.276 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.199 1.199 13 C 0.006 3.994 14 C -0.031 4.031 15 N -0.266 5.266 16 C -0.051 4.051 17 N -0.212 5.212 18 H 0.281 0.719 19 N -0.132 5.132 20 H 0.068 0.932 21 H 0.084 0.916 22 H 0.064 0.936 23 H 0.095 0.905 24 H 0.073 0.927 25 H 0.025 0.975 26 H 0.045 0.955 27 H 0.070 0.930 28 H 0.077 0.923 29 H 0.107 0.893 30 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 2.270 -4.440 13.932 14.797 hybrid contribution 0.067 -0.581 -0.203 0.619 sum 2.338 -5.020 13.729 14.804 Atomic orbital electron populations 1.22317 0.99083 1.00994 1.01851 1.21942 0.92472 0.90873 1.01197 1.62320 1.59389 1.02281 1.01434 1.19817 0.94978 0.93710 0.85045 1.21130 1.21780 1.21209 0.89975 0.91960 1.24961 0.95347 0.95285 0.98987 1.69955 1.32035 1.29222 1.22719 0.86519 0.79972 0.78722 0.82337 1.20780 1.21310 1.19853 1.20368 0.96357 0.97401 0.85277 1.24422 0.89778 0.92109 0.96767 1.70453 1.31738 1.17423 1.07029 1.26017 0.84869 0.95971 0.98213 1.48179 1.20089 1.28021 1.24884 0.71866 1.78099 1.18643 1.16675 0.99791 0.93195 0.91581 0.93569 0.90468 0.92712 0.97489 0.95505 0.92988 0.92347 0.89262 0.76683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.54 9.26 37.16 0.34 -3.20 16 2 C 0.06 1.33 5.71 -3.82 -0.02 1.31 16 3 N -0.53 -11.99 4.69 -237.51 -1.11 -13.10 16 4 C 0.19 4.96 4.53 -4.98 -0.02 4.94 16 5 C -0.50 -14.29 8.40 -34.44 -0.29 -14.58 16 6 H 0.06 1.78 7.38 -52.49 -0.39 1.39 16 7 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -26.81 13.29 55.43 0.74 -26.07 16 9 Si 0.90 21.95 29.54 -169.99 -5.02 16.93 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 13 C 0.14 2.69 5.38 -4.97 -0.03 2.66 16 14 C 0.25 4.57 6.76 -156.86 -1.06 3.51 16 15 N -0.54 -8.60 10.41 -11.98 -0.12 -8.72 16 16 C 0.25 2.78 13.13 -90.66 -1.19 1.59 16 17 N -0.49 -5.77 7.45 29.53 0.22 -5.55 16 18 H 0.44 3.20 8.96 -182.34 -1.63 1.56 16 19 N -0.30 -5.22 12.80 32.42 0.41 -4.81 16 20 H 0.05 0.92 6.34 -51.93 -0.33 0.59 16 21 H 0.07 1.42 6.28 -51.93 -0.33 1.10 16 22 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 23 H 0.08 1.74 6.99 -51.93 -0.36 1.37 16 24 H 0.05 1.10 6.62 -51.93 -0.34 0.75 16 25 H 0.01 0.20 6.01 -51.92 -0.31 -0.11 16 26 H 0.03 0.75 7.91 -51.93 -0.41 0.33 16 27 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 28 H 0.06 1.11 6.07 -51.93 -0.32 0.80 16 29 H 0.09 1.73 7.92 -51.93 -0.41 1.32 16 30 H 0.22 1.18 8.06 -52.49 -0.42 0.75 16 LS Contribution 253.08 15.07 3.81 3.81 Total: -1.00 -33.49 253.08 -8.25 -41.74 By element: Atomic # 1 Polarization: 2.87 SS G_CDS: -4.81 Total: -1.94 kcal Atomic # 6 Polarization: 0.07 SS G_CDS: -2.36 Total: -2.29 kcal Atomic # 7 Polarization: -58.39 SS G_CDS: 0.13 Total: -58.25 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -33.49 -8.25 -41.74 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237601598.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.293 kcal (2) G-P(sol) polarization free energy of solvation -33.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.738 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds