Wall clock time and date at job start Sun Mar 29 2020 21:44:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46905 * 109.46674 * 2 1 4 4 C 1.46891 * 111.00309 * 298.12494 * 3 2 1 5 5 C 1.50708 * 109.47379 * 292.93029 * 4 3 2 6 6 H 1.08001 * 119.99509 * 354.95950 * 5 4 3 7 7 C 1.37871 * 120.00034 * 174.95967 * 5 4 3 8 8 N 1.31516 * 120.00347 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 119.99775 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47054 * 89.99901 * 9 7 5 11 11 H 1.48503 * 109.47309 * 209.99887 * 9 7 5 12 12 H 1.48499 * 109.47194 * 330.00108 * 9 7 5 13 13 C 1.46896 * 110.99788 * 62.08221 * 3 2 1 14 14 C 1.50710 * 109.47608 * 66.04173 * 13 3 2 15 15 N 1.33232 * 125.52704 * 269.69764 * 14 13 3 16 16 C 1.30826 * 109.83001 * 180.26240 * 15 14 13 17 17 N 1.34431 * 108.07676 * 359.97438 * 16 15 14 18 18 H 0.96998 * 126.82222 * 180.02562 * 17 16 15 19 19 N 1.30708 * 125.52173 * 89.99851 * 14 13 3 20 20 H 1.08995 * 109.47107 * 299.65593 * 1 2 3 21 21 H 1.08997 * 109.47535 * 59.66166 * 1 2 3 22 22 H 1.08998 * 109.46556 * 179.65825 * 1 2 3 23 23 H 1.09001 * 109.47287 * 240.00162 * 2 1 3 24 24 H 1.08994 * 109.47213 * 120.00040 * 2 1 3 25 25 H 1.09008 * 109.47135 * 52.92901 * 4 3 2 26 26 H 1.08998 * 109.46956 * 172.92960 * 4 3 2 27 27 H 0.96998 * 119.99869 * 180.02562 * 8 7 5 28 28 H 1.09004 * 109.47264 * 306.04252 * 13 3 2 29 29 H 1.09002 * 109.47385 * 186.04032 * 13 3 2 30 30 H 1.08002 * 125.96520 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 1.5856 2.0969 -1.2094 5 6 2.2648 1.4997 -2.4149 6 1 3.0109 0.7292 -2.2878 7 6 1.9338 1.9369 -3.6798 8 7 1.0249 2.8748 -3.8346 9 14 2.7752 1.1961 -5.1740 10 1 1.9999 0.0211 -5.6470 11 1 2.8459 2.2106 -6.2562 12 1 4.1488 0.7675 -4.8069 13 6 1.5896 2.0953 1.2118 14 6 2.2535 1.4803 2.4169 15 7 1.7601 0.4811 3.1470 16 6 2.5847 0.1939 4.1212 17 7 3.6415 1.0197 4.0303 18 1 4.4142 1.0417 4.6162 19 7 3.4042 1.8446 2.9186 20 1 -0.3633 0.5085 0.8930 21 1 -0.3634 0.5191 -0.8869 22 1 -0.3632 -1.0277 -0.0061 23 1 1.8934 -0.5138 -0.8900 24 1 1.8934 -0.5138 0.8899 25 1 0.5049 2.0036 -1.3178 26 1 1.8528 3.1504 -1.1265 27 1 0.7918 3.1821 -4.7246 28 1 0.5072 2.0173 1.3140 29 1 1.8728 3.1453 1.1374 30 1 2.4414 -0.5728 4.8683 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001237601598.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:22 Heat of formation + Delta-G solvation = 69.229499 kcal Electronic energy + Delta-G solvation = -13825.188010 eV Core-core repulsion = 11463.648236 eV Total energy + Delta-G solvation = -2361.539774 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.98257 -38.89654 -34.82002 -33.54738 -32.46551 -30.99178 -29.47546 -26.70202 -25.00866 -23.58342 -22.08632 -20.51185 -19.11754 -18.32284 -17.04706 -16.86925 -16.28544 -15.74243 -15.48499 -15.13970 -14.54657 -13.97759 -13.35419 -13.11870 -12.99753 -12.92267 -12.71277 -12.53424 -12.42694 -11.88863 -11.50780 -11.32373 -10.99229 -10.96678 -10.64399 -10.55410 -8.95949 -8.16532 -6.25566 0.75306 1.42168 1.43470 1.54955 1.89964 1.96124 2.43525 3.15922 3.22330 3.57051 3.75656 4.27263 4.33081 4.43663 4.54279 4.66457 4.73670 4.98002 5.05789 5.24998 5.34643 5.36768 5.40396 5.53842 5.69960 6.08563 6.33991 6.38921 6.61042 6.89456 7.21650 7.43095 8.94118 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.052350 B = 0.007347 C = 0.007152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 534.730347 B = 3809.954407 C = 3913.906409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.070 3.930 3 N -0.540 5.540 4 C 0.205 3.795 5 C -0.520 4.520 6 H 0.056 0.944 7 C 0.005 3.995 8 N -0.932 5.932 9 Si 0.966 3.034 10 H -0.272 1.272 11 H -0.281 1.281 12 H -0.269 1.269 13 C 0.140 3.860 14 C 0.236 3.764 15 N -0.572 5.572 16 C 0.273 3.727 17 N -0.477 5.477 18 H 0.457 0.543 19 N -0.340 5.340 20 H 0.058 0.942 21 H 0.036 0.964 22 H 0.070 0.930 23 H 0.057 0.943 24 H 0.069 0.931 25 H -0.011 1.011 26 H 0.001 0.999 27 H 0.264 0.736 28 H 0.061 0.939 29 H 0.080 0.920 30 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.436 -6.667 15.792 17.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.058 4.058 3 N -0.264 5.264 4 C 0.079 3.921 5 C -0.558 4.558 6 H 0.075 0.925 7 C -0.193 4.193 8 N -0.573 5.573 9 Si 0.791 3.209 10 H -0.197 1.197 11 H -0.206 1.206 12 H -0.194 1.194 13 C 0.010 3.990 14 C -0.047 4.047 15 N -0.301 5.301 16 C -0.025 4.025 17 N -0.197 5.197 18 H 0.306 0.694 19 N -0.170 5.170 20 H 0.077 0.923 21 H 0.055 0.945 22 H 0.089 0.911 23 H 0.075 0.925 24 H 0.087 0.913 25 H 0.007 0.993 26 H 0.019 0.981 27 H 0.073 0.927 28 H 0.079 0.921 29 H 0.099 0.901 30 H 0.292 0.708 Dipole moment (debyes) X Y Z Total from point charges 2.970 -6.150 15.280 16.737 hybrid contribution -0.108 -0.077 -0.442 0.462 sum 2.862 -6.227 14.837 16.344 Atomic orbital electron populations 1.22169 0.97784 1.02208 1.00770 1.21870 0.93478 0.89706 1.00761 1.62182 1.59929 1.03027 1.01291 1.19454 0.93607 0.92552 0.86463 1.21389 1.21930 1.21284 0.91216 0.92544 1.25828 0.95890 0.95565 1.02052 1.70073 1.33225 1.30342 1.23634 0.85435 0.78958 0.78140 0.78392 1.19720 1.20637 1.19354 1.20213 0.96793 0.96955 0.85052 1.23914 0.90432 0.93468 0.96900 1.70384 1.33540 1.17623 1.08582 1.27091 0.82876 0.95282 0.97215 1.48053 1.21073 1.26960 1.23618 0.69425 1.77964 1.18609 1.18559 1.01877 0.92305 0.94491 0.91126 0.92496 0.91264 0.99291 0.98059 0.92692 0.92071 0.90132 0.70760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.54 9.26 71.98 0.67 -5.87 16 2 C 0.07 2.93 5.71 86.30 0.49 3.42 16 3 N -0.54 -25.00 4.69 -905.34 -4.24 -29.24 16 4 C 0.21 11.19 4.53 85.56 0.39 11.58 16 5 C -0.52 -30.27 8.40 25.60 0.21 -30.06 16 6 H 0.06 3.28 7.38 -2.91 -0.02 3.26 16 7 C 0.00 0.27 5.46 84.65 0.46 0.73 16 8 N -0.93 -56.59 13.29 21.45 0.28 -56.30 16 9 Si 0.97 45.23 29.54 68.60 2.03 47.26 16 10 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 11 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 12 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 13 C 0.14 5.63 5.38 85.56 0.46 6.09 16 14 C 0.24 8.38 6.76 138.64 0.94 9.32 16 15 N -0.57 -16.96 10.41 -191.80 -2.00 -18.96 16 16 C 0.27 5.04 13.13 180.36 2.37 7.40 16 17 N -0.48 -9.72 7.45 -60.49 -0.45 -10.17 16 18 H 0.46 5.14 8.96 -213.10 -1.91 3.23 16 19 N -0.34 -11.32 12.80 -51.33 -0.66 -11.98 16 20 H 0.06 2.13 6.34 -2.39 -0.02 2.11 16 21 H 0.04 1.62 6.28 -2.39 -0.01 1.60 16 22 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 23 H 0.06 2.59 6.99 -2.39 -0.02 2.57 16 24 H 0.07 2.70 6.62 -2.39 -0.02 2.69 16 25 H -0.01 -0.61 6.01 -2.38 -0.01 -0.62 16 26 H 0.00 0.08 7.91 -2.39 -0.02 0.06 16 27 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 28 H 0.06 2.37 6.07 -2.38 -0.01 2.36 16 29 H 0.08 3.27 7.92 -2.39 -0.02 3.25 16 30 H 0.28 1.31 8.06 -2.91 -0.02 1.28 16 Total: -1.00 -73.80 253.08 0.20 -73.60 By element: Atomic # 1 Polarization: 3.95 SS G_CDS: -0.75 Total: 3.19 kcal Atomic # 6 Polarization: -3.38 SS G_CDS: 5.99 Total: 2.61 kcal Atomic # 7 Polarization: -119.59 SS G_CDS: -7.06 Total: -126.65 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.26 kcal Total: -73.80 0.20 -73.60 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237601598.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.825 kcal (2) G-P(sol) polarization free energy of solvation -73.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.596 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds