Wall clock time and date at job start Sun Mar 29 2020 21:51:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53008 * 109.46915 * 2 1 4 4 H 1.09003 * 109.46893 * 305.99514 * 3 2 1 5 5 C 1.50699 * 109.47000 * 185.99927 * 3 2 1 6 6 H 1.08003 * 119.99725 * 274.98716 * 5 3 2 7 7 C 1.37878 * 120.00312 * 94.99221 * 5 3 2 8 8 N 1.31511 * 119.99873 * 184.83756 * 7 5 3 9 9 Si 1.86801 * 119.99971 * 4.83582 * 7 5 3 10 10 H 1.48499 * 109.46940 * 84.86256 * 9 7 5 11 11 H 1.48490 * 109.47229 * 204.86620 * 9 7 5 12 12 H 1.48509 * 109.46849 * 324.86727 * 9 7 5 13 13 N 1.46900 * 109.47416 * 65.99479 * 3 2 1 14 14 C 1.46901 * 110.99994 * 275.00406 * 13 3 2 15 15 H 1.09004 * 115.55837 * 350.64082 * 14 13 3 16 16 C 1.53153 * 117.51790 * 136.38984 * 14 13 3 17 17 C 1.52330 * 117.51373 * 204.81325 * 14 13 3 18 18 C 1.53291 * 128.80038 * 134.68477 * 17 14 13 19 19 N 1.48099 * 85.92476 * 196.85566 * 18 17 14 20 20 C 1.48104 * 90.95600 * 24.14855 * 19 18 17 21 21 H 1.08993 * 109.47903 * 300.00408 * 1 2 3 22 22 H 1.09002 * 109.46895 * 60.00695 * 1 2 3 23 23 H 1.09006 * 109.46682 * 180.02562 * 1 2 3 24 24 H 1.08993 * 109.47903 * 239.99592 * 2 1 3 25 25 H 1.09002 * 109.46895 * 119.99305 * 2 1 3 26 26 H 0.97000 * 119.99676 * 180.02562 * 8 7 5 27 27 H 1.00905 * 110.99467 * 38.95508 * 13 3 2 28 28 H 1.08993 * 117.51564 * 214.87836 * 16 14 13 29 29 H 1.09000 * 117.51216 * 359.95452 * 16 14 13 30 30 H 1.09003 * 113.79826 * 311.10643 * 18 17 14 31 31 H 1.08996 * 113.80599 * 82.60519 * 18 17 14 32 32 H 1.00902 * 111.00498 * 137.12003 * 19 18 17 33 33 H 1.08999 * 113.80018 * 221.59270 * 20 19 18 34 34 H 1.09003 * 113.80135 * 90.10744 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5916 1.9864 -0.8315 5 6 3.5396 1.4452 -0.1485 6 1 4.1686 1.3324 0.7222 7 6 4.1086 1.5917 -1.3958 8 7 5.4127 1.4989 -1.5386 9 14 3.0273 1.9219 -2.8828 10 1 2.7605 3.3790 -2.9870 11 1 3.7194 1.4563 -4.1113 12 1 1.7423 1.1929 -2.7320 13 7 1.6719 2.0921 1.2652 14 6 0.3105 2.6399 1.1992 15 1 -0.1518 2.6333 0.2121 16 6 -0.6015 2.4165 2.4091 17 6 -0.0274 3.7992 2.1279 18 6 -0.7707 5.1010 1.8079 19 7 -0.1989 5.6147 3.0738 20 6 0.9153 4.6422 2.9941 21 1 -0.3634 0.5138 0.8898 22 1 -0.3633 0.5137 -0.8901 23 1 -0.3633 -1.0277 0.0005 24 1 1.8934 -0.5138 -0.8898 25 1 1.8933 -0.5137 0.8901 26 1 5.8130 1.6023 -2.4160 27 1 1.7676 1.4536 2.0406 28 1 -1.6636 2.2638 2.2177 29 1 -0.1913 1.8625 3.2534 30 1 -0.4007 5.6118 0.9189 31 1 -1.8562 5.0031 1.8235 32 1 0.1371 6.5595 2.9618 33 1 1.1656 4.1808 3.9493 34 1 1.7881 5.0162 2.4588 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001246445473.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:09 Heat of formation + Delta-G solvation = 35.588562 kcal Electronic energy + Delta-G solvation = -14268.545641 eV Core-core repulsion = 12009.087429 eV Total energy + Delta-G solvation = -2259.458211 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.78066 -38.23386 -35.26923 -33.96445 -31.35148 -28.73937 -26.92642 -25.52283 -24.38900 -22.44323 -21.62920 -19.46120 -18.90196 -17.32937 -16.75579 -16.22862 -15.94453 -15.55249 -15.15974 -14.73880 -14.20773 -13.98912 -13.60157 -13.38480 -13.20484 -12.85282 -12.71263 -12.36936 -12.22418 -11.82206 -11.76475 -11.48973 -11.43874 -11.09747 -10.93808 -10.65404 -9.82761 -8.72041 -8.26389 -6.27775 1.33770 1.34260 1.44353 2.34735 2.78175 3.01330 3.25960 3.36553 3.72244 3.97294 4.15337 4.26312 4.43926 4.46202 4.49776 4.62914 4.70653 4.78378 4.79924 4.86831 4.93073 5.08869 5.13552 5.16356 5.17946 5.21475 5.29233 5.52357 5.71367 6.10071 6.35286 6.70494 6.77016 6.79156 7.36253 8.91141 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.032073 B = 0.009579 C = 0.008658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.791623 B = 2922.428141 C = 3233.350697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.145 4.145 3 C 0.195 3.805 4 H 0.034 0.966 5 C -0.497 4.497 6 H 0.031 0.969 7 C 0.009 3.991 8 N -0.952 5.952 9 Si 0.940 3.060 10 H -0.271 1.271 11 H -0.289 1.289 12 H -0.244 1.244 13 N -0.652 5.652 14 C 0.037 3.963 15 H 0.101 0.899 16 C -0.151 4.151 17 C -0.174 4.174 18 C 0.050 3.950 19 N -0.638 5.638 20 C 0.055 3.945 21 H 0.071 0.929 22 H 0.045 0.955 23 H 0.060 0.940 24 H 0.040 0.960 25 H 0.052 0.948 26 H 0.264 0.736 27 H 0.335 0.665 28 H 0.113 0.887 29 H 0.098 0.902 30 H 0.071 0.929 31 H 0.098 0.902 32 H 0.324 0.676 33 H 0.080 0.920 34 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.902 3.327 4.528 15.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.185 4.185 3 C 0.086 3.914 4 H 0.052 0.948 5 C -0.535 4.535 6 H 0.049 0.951 7 C -0.187 4.187 8 N -0.593 5.593 9 Si 0.764 3.236 10 H -0.197 1.197 11 H -0.215 1.215 12 H -0.167 1.167 13 N -0.280 5.280 14 C -0.075 4.075 15 H 0.119 0.881 16 C -0.189 4.189 17 C -0.176 4.176 18 C -0.080 4.080 19 N -0.263 5.263 20 C -0.075 4.075 21 H 0.090 0.910 22 H 0.064 0.936 23 H 0.079 0.921 24 H 0.059 0.941 25 H 0.070 0.930 26 H 0.073 0.927 27 H 0.154 0.846 28 H 0.131 0.869 29 H 0.117 0.883 30 H 0.089 0.911 31 H 0.116 0.884 32 H 0.137 0.863 33 H 0.098 0.902 34 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -14.954 3.675 4.882 16.154 hybrid contribution 0.600 -0.359 -1.435 1.596 sum -14.353 3.316 3.447 15.129 Atomic orbital electron populations 1.21982 0.95029 1.01923 1.02024 1.22331 0.95889 0.99502 1.00786 1.19516 0.93211 0.90042 0.88589 0.94794 1.21188 0.91575 1.47603 0.93174 0.95103 1.25838 0.96019 0.94922 1.01962 1.70054 1.12045 1.52573 1.24594 0.85854 0.79990 0.79229 0.78490 1.19679 1.21481 1.16702 1.60317 1.21229 1.40713 1.05751 1.22466 0.89514 1.00878 0.94653 0.88109 1.23340 0.99991 0.95921 0.99683 1.23086 1.01070 0.90314 1.03126 1.23250 1.00646 0.91977 0.92145 1.66888 1.20928 1.06280 1.32212 1.22975 0.92997 0.92703 0.98801 0.91023 0.93592 0.92094 0.94079 0.92950 0.92702 0.84578 0.86899 0.88327 0.91121 0.88384 0.86311 0.90154 0.92132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.57 8.88 71.98 0.64 -3.93 16 2 C -0.15 -5.67 5.39 30.60 0.16 -5.51 16 3 C 0.20 8.72 1.83 44.17 0.08 8.80 16 4 H 0.03 1.55 4.73 -2.39 -0.01 1.54 16 5 C -0.50 -28.13 9.19 25.60 0.24 -27.90 16 6 H 0.03 1.96 8.06 -2.91 -0.02 1.94 16 7 C 0.01 0.54 5.47 84.66 0.46 1.00 16 8 N -0.95 -59.80 13.96 21.45 0.30 -59.50 16 9 Si 0.94 44.08 26.99 68.60 1.85 45.93 16 10 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 11 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 12 H -0.24 -10.39 6.82 99.48 0.68 -9.71 16 13 N -0.65 -25.25 6.46 -474.16 -3.06 -28.32 16 14 C 0.04 1.13 4.11 44.74 0.18 1.32 16 15 H 0.10 3.15 7.11 -2.38 -0.02 3.14 16 16 C -0.15 -3.71 9.17 30.42 0.28 -3.43 16 17 C -0.17 -4.80 3.18 -52.40 -0.17 -4.97 16 18 C 0.05 1.18 8.92 86.17 0.77 1.95 16 19 N -0.64 -15.68 8.53 -533.47 -4.55 -20.23 16 20 C 0.06 1.56 8.91 86.16 0.77 2.33 16 21 H 0.07 1.94 5.02 -2.39 -0.01 1.92 16 22 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 23 H 0.06 1.59 8.14 -2.38 -0.02 1.57 16 24 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 25 H 0.05 2.02 8.02 -2.39 -0.02 2.00 16 26 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 27 H 0.33 12.34 8.19 -89.69 -0.73 11.61 16 28 H 0.11 2.30 8.14 -2.39 -0.02 2.28 16 29 H 0.10 2.38 8.09 -2.39 -0.02 2.36 16 30 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.32 6.87 8.92 -89.69 -0.80 6.07 16 33 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 34 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 Total: -1.00 -64.10 273.58 -2.52 -66.62 By element: Atomic # 1 Polarization: 26.31 SS G_CDS: -0.47 Total: 25.84 kcal Atomic # 6 Polarization: -33.76 SS G_CDS: 3.42 Total: -30.34 kcal Atomic # 7 Polarization: -100.74 SS G_CDS: -7.31 Total: -108.05 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 1.85 Total: 45.93 kcal Total: -64.10 -2.52 -66.62 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246445473.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.208 kcal (2) G-P(sol) polarization free energy of solvation -64.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.619 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds