Wall clock time and date at job start Sun Mar 29 2020 21:51:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.47220 * 2 1 4 4 H 1.09006 * 109.47065 * 54.09835 * 3 2 1 5 5 C 1.50698 * 109.47267 * 174.09958 * 3 2 1 6 6 H 1.07999 * 120.00263 * 114.18453 * 5 3 2 7 7 C 1.37877 * 119.99818 * 294.18763 * 5 3 2 8 8 N 1.31513 * 120.00170 * 159.56893 * 7 5 3 9 9 Si 1.86801 * 120.00175 * 339.56527 * 7 5 3 10 10 H 1.48497 * 109.47309 * 270.00107 * 9 7 5 11 11 H 1.48498 * 109.47159 * 30.00167 * 9 7 5 12 12 H 1.48501 * 109.47389 * 150.00096 * 9 7 5 13 13 N 1.46903 * 109.46859 * 294.09954 * 3 2 1 14 14 C 1.46896 * 111.00096 * 85.00452 * 13 3 2 15 15 H 1.09002 * 115.56298 * 9.40668 * 14 13 3 16 16 C 1.53152 * 117.51282 * 223.66641 * 14 13 3 17 17 C 1.52333 * 117.52171 * 155.16642 * 14 13 3 18 18 C 1.53295 * 128.79983 * 349.55777 * 17 14 13 19 19 N 1.48097 * 85.92168 * 196.85465 * 18 17 14 20 20 C 1.48099 * 90.95761 * 24.14984 * 19 18 17 21 21 H 1.09000 * 109.46560 * 60.00282 * 1 2 3 22 22 H 1.09002 * 109.46949 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.47076 * 300.00027 * 1 2 3 24 24 H 1.08999 * 109.47076 * 239.99973 * 2 1 3 25 25 H 1.09005 * 109.47107 * 120.00186 * 2 1 3 26 26 H 0.97003 * 119.99833 * 354.92805 * 8 7 5 27 27 H 1.00893 * 111.00178 * 321.04438 * 13 3 2 28 28 H 1.09000 * 117.51998 * 359.97438 * 16 14 13 29 29 H 1.09001 * 117.51569 * 145.07713 * 16 14 13 30 30 H 1.08995 * 113.79829 * 311.11041 * 18 17 14 31 31 H 1.08996 * 113.79718 * 82.60444 * 18 17 14 32 32 H 1.00906 * 110.99858 * 137.12567 * 19 18 17 33 33 H 1.09008 * 113.79705 * 221.59687 * 20 19 18 34 34 H 1.08997 * 113.79927 * 90.10294 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5930 1.9859 0.8325 5 6 3.5400 1.4450 0.1461 6 1 4.1608 1.7996 -0.6634 7 6 4.1197 0.9945 1.3131 8 7 5.3788 0.6150 1.3180 9 14 3.1166 0.9233 2.8874 10 1 3.2438 2.2121 3.6141 11 1 1.6898 0.6814 2.5547 12 1 3.6189 -0.1801 3.7449 13 7 1.6701 2.0926 -1.2643 14 6 0.3089 2.6406 -1.1959 15 1 -0.1515 2.6344 -0.2079 16 6 -0.6055 2.4166 -2.4039 17 6 -0.0304 3.8006 -2.1231 18 6 0.9111 4.6443 -2.9902 19 7 -0.2031 5.6168 -3.0675 20 6 -0.7731 5.1022 -1.8012 21 1 -0.3632 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5139 0.8900 26 1 5.8787 0.5819 0.4873 27 1 1.7645 1.4546 -2.0402 28 1 -0.1967 1.8631 -3.2493 29 1 -1.6672 2.2633 -2.2103 30 1 1.7847 5.0176 -2.4559 31 1 1.1599 4.1834 -3.9461 32 1 0.1331 6.5615 -2.9552 33 1 -1.8587 5.0042 -1.8152 34 1 -0.4017 5.6122 -0.9123 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001246445475.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:11 Heat of formation + Delta-G solvation = 57.878997 kcal Electronic energy + Delta-G solvation = -14267.568963 eV Core-core repulsion = 12009.077338 eV Total energy + Delta-G solvation = -2258.491625 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.62928 -36.74798 -33.86114 -31.98745 -29.88868 -26.59683 -25.84362 -24.37841 -22.32369 -21.16909 -19.90558 -18.25442 -17.49409 -16.06839 -15.37756 -14.89031 -14.13928 -14.11856 -13.47809 -13.07936 -12.93227 -12.57969 -12.11963 -11.98321 -11.57155 -11.33875 -10.91425 -10.81141 -10.55538 -10.40401 -10.22038 -9.94952 -9.82232 -9.62844 -8.98992 -8.71933 -8.18521 -7.29742 -6.42834 -4.01162 3.40169 3.42373 3.57183 3.92151 4.38025 4.47842 4.50874 4.89695 5.09533 5.22531 5.41637 5.51865 5.67495 5.75467 5.84942 5.90621 5.91123 5.93685 6.05379 6.12072 6.15060 6.25497 6.25840 6.53426 6.56702 6.78639 6.89238 7.20556 7.33389 7.81539 8.24404 8.33625 8.46433 9.02480 9.64431 10.94589 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.037462 B = 0.008865 C = 0.008221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.243067 B = 3157.686075 C = 3404.937612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.150 4.150 3 C 0.197 3.803 4 H 0.029 0.971 5 C -0.588 4.588 6 H 0.063 0.937 7 C 0.032 3.968 8 N -0.905 5.905 9 Si 1.038 2.962 10 H -0.286 1.286 11 H -0.275 1.275 12 H -0.287 1.287 13 N -0.639 5.639 14 C 0.059 3.941 15 H 0.103 0.897 16 C -0.176 4.176 17 C -0.167 4.167 18 C 0.058 3.942 19 N -0.639 5.639 20 C 0.045 3.955 21 H 0.056 0.944 22 H 0.039 0.961 23 H 0.044 0.956 24 H 0.051 0.949 25 H 0.058 0.942 26 H 0.269 0.731 27 H 0.332 0.668 28 H 0.093 0.907 29 H 0.090 0.910 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.313 0.687 33 H 0.081 0.919 34 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.916 4.313 -4.510 13.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.190 4.190 3 C 0.088 3.912 4 H 0.047 0.953 5 C -0.626 4.626 6 H 0.081 0.919 7 C -0.173 4.173 8 N -0.539 5.539 9 Si 0.866 3.134 10 H -0.213 1.213 11 H -0.201 1.201 12 H -0.213 1.213 13 N -0.266 5.266 14 C -0.054 4.054 15 H 0.121 0.879 16 C -0.215 4.215 17 C -0.169 4.169 18 C -0.071 4.071 19 N -0.263 5.263 20 C -0.085 4.085 21 H 0.075 0.925 22 H 0.058 0.942 23 H 0.063 0.937 24 H 0.070 0.930 25 H 0.077 0.923 26 H 0.079 0.921 27 H 0.151 0.849 28 H 0.112 0.888 29 H 0.108 0.892 30 H 0.093 0.907 31 H 0.099 0.901 32 H 0.125 0.875 33 H 0.100 0.900 34 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -11.982 4.301 -3.360 13.166 hybrid contribution -0.026 -0.165 -0.960 0.975 sum -12.007 4.136 -4.320 13.415 Atomic orbital electron populations 1.22081 0.98428 1.00224 1.01188 1.22604 0.92962 1.01932 1.01512 1.19662 0.96982 0.87744 0.86770 0.95328 1.21933 0.90018 1.46704 1.03941 0.91927 1.25638 0.97124 0.92801 1.01720 1.70803 1.10385 1.41554 1.31157 0.84129 0.75925 0.77085 0.76244 1.21304 1.20090 1.21297 1.60367 1.18387 1.40772 1.07112 1.22530 0.90488 0.98771 0.93595 0.87907 1.23331 0.99427 0.97091 1.01624 1.22916 1.00692 0.89460 1.03829 1.23031 0.93039 0.92055 0.99000 1.66912 1.21726 1.05727 1.31946 1.23196 0.99879 0.93246 0.92156 0.92543 0.94227 0.93661 0.93044 0.92332 0.92113 0.84885 0.88818 0.89173 0.90724 0.90106 0.87523 0.90037 0.91402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.78 8.88 37.16 0.33 -2.45 16 2 C -0.15 -3.16 4.82 -26.73 -0.13 -3.29 16 3 C 0.20 4.53 1.72 -68.87 -0.12 4.41 16 4 H 0.03 0.68 5.99 -51.93 -0.31 0.37 16 5 C -0.59 -16.29 9.08 -34.44 -0.31 -16.61 16 6 H 0.06 1.91 8.06 -52.49 -0.42 1.48 16 7 C 0.03 0.92 5.25 -17.82 -0.09 0.83 16 8 N -0.91 -27.60 13.70 55.43 0.76 -26.84 16 9 Si 1.04 24.88 26.32 -169.99 -4.47 20.40 16 10 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.28 -6.04 5.88 56.52 0.33 -5.71 16 12 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 13 N -0.64 -12.79 6.46 -101.23 -0.65 -13.44 16 14 C 0.06 0.98 4.10 -67.98 -0.28 0.70 16 15 H 0.10 1.75 7.11 -51.93 -0.37 1.38 16 16 C -0.18 -2.50 9.17 -26.92 -0.25 -2.75 16 17 C -0.17 -2.50 3.19 -154.91 -0.49 -3.00 16 18 C 0.06 0.86 8.91 -3.01 -0.03 0.83 16 19 N -0.64 -8.52 8.53 -119.99 -1.02 -9.54 16 20 C 0.05 0.60 8.92 -3.02 -0.03 0.57 16 21 H 0.06 0.89 5.01 -51.93 -0.26 0.63 16 22 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 24 H 0.05 1.07 8.02 -51.93 -0.42 0.66 16 25 H 0.06 1.31 5.62 -51.93 -0.29 1.02 16 26 H 0.27 8.18 8.73 -40.82 -0.36 7.83 16 27 H 0.33 6.43 8.19 -39.30 -0.32 6.10 16 28 H 0.09 1.31 8.09 -51.93 -0.42 0.89 16 29 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.31 3.58 8.92 -39.29 -0.35 3.23 16 33 H 0.08 0.99 8.14 -51.92 -0.42 0.56 16 34 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 269.86 15.07 4.07 4.07 Total: -1.00 -29.21 269.86 -8.07 -37.28 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: -5.34 Total: 8.83 kcal Atomic # 6 Polarization: -19.34 SS G_CDS: -1.40 Total: -20.74 kcal Atomic # 7 Polarization: -48.91 SS G_CDS: -0.92 Total: -49.83 kcal Atomic # 14 Polarization: 24.88 SS G_CDS: -4.47 Total: 20.40 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -29.21 -8.07 -37.28 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246445475.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.157 kcal (2) G-P(sol) polarization free energy of solvation -29.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.278 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds