Wall clock time and date at job start Sun Mar 29 2020 21:51:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.47220 * 2 1 4 4 H 1.09006 * 109.47065 * 54.09835 * 3 2 1 5 5 C 1.50698 * 109.47267 * 174.09958 * 3 2 1 6 6 H 1.07999 * 120.00263 * 114.18453 * 5 3 2 7 7 C 1.37877 * 119.99818 * 294.18763 * 5 3 2 8 8 N 1.31513 * 120.00170 * 159.56893 * 7 5 3 9 9 Si 1.86801 * 120.00175 * 339.56527 * 7 5 3 10 10 H 1.48497 * 109.47309 * 270.00107 * 9 7 5 11 11 H 1.48498 * 109.47159 * 30.00167 * 9 7 5 12 12 H 1.48501 * 109.47389 * 150.00096 * 9 7 5 13 13 N 1.46903 * 109.46859 * 294.09954 * 3 2 1 14 14 C 1.46896 * 111.00096 * 85.00452 * 13 3 2 15 15 H 1.09002 * 115.56298 * 9.40668 * 14 13 3 16 16 C 1.53152 * 117.51282 * 223.66641 * 14 13 3 17 17 C 1.52333 * 117.52171 * 155.16642 * 14 13 3 18 18 C 1.53295 * 128.79983 * 349.55777 * 17 14 13 19 19 N 1.48097 * 85.92168 * 196.85465 * 18 17 14 20 20 C 1.48099 * 90.95761 * 24.14984 * 19 18 17 21 21 H 1.09000 * 109.46560 * 60.00282 * 1 2 3 22 22 H 1.09002 * 109.46949 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.47076 * 300.00027 * 1 2 3 24 24 H 1.08999 * 109.47076 * 239.99973 * 2 1 3 25 25 H 1.09005 * 109.47107 * 120.00186 * 2 1 3 26 26 H 0.97003 * 119.99833 * 354.92805 * 8 7 5 27 27 H 1.00893 * 111.00178 * 321.04438 * 13 3 2 28 28 H 1.09000 * 117.51998 * 359.97438 * 16 14 13 29 29 H 1.09001 * 117.51569 * 145.07713 * 16 14 13 30 30 H 1.08995 * 113.79829 * 311.11041 * 18 17 14 31 31 H 1.08996 * 113.79718 * 82.60444 * 18 17 14 32 32 H 1.00906 * 110.99858 * 137.12567 * 19 18 17 33 33 H 1.09008 * 113.79705 * 221.59687 * 20 19 18 34 34 H 1.08997 * 113.79927 * 90.10294 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5930 1.9859 0.8325 5 6 3.5400 1.4450 0.1461 6 1 4.1608 1.7996 -0.6634 7 6 4.1197 0.9945 1.3131 8 7 5.3788 0.6150 1.3180 9 14 3.1166 0.9233 2.8874 10 1 3.2438 2.2121 3.6141 11 1 1.6898 0.6814 2.5547 12 1 3.6189 -0.1801 3.7449 13 7 1.6701 2.0926 -1.2643 14 6 0.3089 2.6406 -1.1959 15 1 -0.1515 2.6344 -0.2079 16 6 -0.6055 2.4166 -2.4039 17 6 -0.0304 3.8006 -2.1231 18 6 0.9111 4.6443 -2.9902 19 7 -0.2031 5.6168 -3.0675 20 6 -0.7731 5.1022 -1.8012 21 1 -0.3632 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5139 0.8900 26 1 5.8787 0.5819 0.4873 27 1 1.7645 1.4546 -2.0402 28 1 -0.1967 1.8631 -3.2493 29 1 -1.6672 2.2633 -2.2103 30 1 1.7847 5.0176 -2.4559 31 1 1.1599 4.1834 -3.9461 32 1 0.1331 6.5615 -2.9552 33 1 -1.8587 5.0042 -1.8152 34 1 -0.4017 5.6122 -0.9123 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001246445475.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:11 Heat of formation + Delta-G solvation = 34.643460 kcal Electronic energy + Delta-G solvation = -14268.576532 eV Core-core repulsion = 12009.077338 eV Total energy + Delta-G solvation = -2259.499194 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.80276 -38.28521 -35.39703 -33.94913 -31.37802 -28.43039 -26.94908 -25.51740 -24.07632 -22.47290 -21.69758 -19.78551 -19.17193 -17.31785 -16.90979 -15.97622 -15.76739 -15.63085 -15.11596 -14.64852 -14.38897 -14.14622 -13.46055 -13.36685 -13.00396 -12.81595 -12.62598 -12.45319 -12.20681 -11.75163 -11.57373 -11.51696 -11.40574 -11.02711 -10.97029 -10.37905 -9.86231 -8.86233 -8.62799 -6.28675 1.46829 1.51790 1.69771 2.51047 2.75485 3.06135 3.16632 3.33608 3.68780 3.94252 4.09451 4.26980 4.43145 4.43902 4.50304 4.61528 4.68513 4.76258 4.83284 4.84725 4.91586 5.06545 5.11334 5.13459 5.16213 5.18435 5.30152 5.54489 5.91998 6.10668 6.33525 6.44979 6.72197 6.79333 7.47026 8.65955 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.037462 B = 0.008865 C = 0.008221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.243067 B = 3157.686075 C = 3404.937612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.148 4.148 3 C 0.203 3.797 4 H 0.029 0.971 5 C -0.590 4.590 6 H 0.018 0.982 7 C -0.020 4.020 8 N -0.940 5.940 9 Si 1.081 2.919 10 H -0.277 1.277 11 H -0.240 1.240 12 H -0.288 1.288 13 N -0.652 5.652 14 C 0.039 3.961 15 H 0.105 0.895 16 C -0.153 4.153 17 C -0.173 4.173 18 C 0.055 3.945 19 N -0.638 5.638 20 C 0.051 3.949 21 H 0.070 0.930 22 H 0.059 0.941 23 H 0.051 0.949 24 H 0.043 0.957 25 H 0.042 0.958 26 H 0.252 0.748 27 H 0.332 0.668 28 H 0.095 0.905 29 H 0.114 0.886 30 H 0.060 0.940 31 H 0.078 0.922 32 H 0.325 0.675 33 H 0.099 0.901 34 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.162 4.627 -4.267 16.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.188 4.188 3 C 0.094 3.906 4 H 0.046 0.954 5 C -0.629 4.629 6 H 0.036 0.964 7 C -0.218 4.218 8 N -0.576 5.576 9 Si 0.902 3.098 10 H -0.203 1.203 11 H -0.164 1.164 12 H -0.214 1.214 13 N -0.280 5.280 14 C -0.073 4.073 15 H 0.123 0.877 16 C -0.192 4.192 17 C -0.175 4.175 18 C -0.075 4.075 19 N -0.263 5.263 20 C -0.078 4.078 21 H 0.089 0.911 22 H 0.078 0.922 23 H 0.070 0.930 24 H 0.062 0.938 25 H 0.061 0.939 26 H 0.061 0.939 27 H 0.151 0.849 28 H 0.113 0.887 29 H 0.132 0.868 30 H 0.079 0.921 31 H 0.096 0.904 32 H 0.138 0.862 33 H 0.117 0.883 34 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -15.255 4.638 -3.150 16.252 hybrid contribution 1.033 -0.194 -1.168 1.572 sum -14.221 4.444 -4.318 15.512 Atomic orbital electron populations 1.21982 0.94813 1.01929 1.02219 1.22452 0.96136 0.99756 1.00441 1.19410 0.93542 0.89430 0.88231 0.95356 1.22181 0.92848 1.45382 1.02445 0.96393 1.27075 0.97264 0.92105 1.05352 1.70937 1.11818 1.44645 1.30225 0.83614 0.76387 0.77418 0.72389 1.20255 1.16374 1.21432 1.60184 1.21514 1.40572 1.05745 1.22470 0.89311 1.00718 0.94798 0.87736 1.23363 1.00075 0.96033 0.99720 1.23113 1.01060 0.90299 1.03053 1.22969 0.93064 0.92797 0.98717 1.66885 1.20892 1.06262 1.32302 1.23252 1.00685 0.91764 0.92149 0.91140 0.92206 0.93015 0.93816 0.93901 0.93910 0.84882 0.88653 0.86771 0.92142 0.90398 0.86241 0.88327 0.90858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.67 8.88 71.98 0.64 -4.03 16 2 C -0.15 -5.98 4.82 30.59 0.15 -5.83 16 3 C 0.20 9.20 1.72 44.17 0.08 9.28 16 4 H 0.03 1.30 5.99 -2.38 -0.01 1.29 16 5 C -0.59 -33.64 9.08 25.60 0.23 -33.41 16 6 H 0.02 1.14 8.06 -2.91 -0.02 1.12 16 7 C -0.02 -1.16 5.25 84.65 0.44 -0.72 16 8 N -0.94 -59.45 13.70 21.45 0.29 -59.16 16 9 Si 1.08 49.74 26.32 68.60 1.81 51.54 16 10 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 11 H -0.24 -9.61 5.88 99.48 0.58 -9.02 16 12 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 13 N -0.65 -25.69 6.46 -474.19 -3.06 -28.75 16 14 C 0.04 1.20 4.10 44.75 0.18 1.39 16 15 H 0.10 3.23 7.11 -2.39 -0.02 3.21 16 16 C -0.15 -3.83 9.17 30.47 0.28 -3.55 16 17 C -0.17 -4.76 3.19 -52.35 -0.17 -4.93 16 18 C 0.05 1.54 8.91 86.17 0.77 2.30 16 19 N -0.64 -15.48 8.53 -533.53 -4.55 -20.03 16 20 C 0.05 1.19 8.92 86.16 0.77 1.96 16 21 H 0.07 1.95 5.01 -2.39 -0.01 1.94 16 22 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 23 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 24 H 0.04 1.79 8.02 -2.39 -0.02 1.77 16 25 H 0.04 1.84 5.62 -2.38 -0.01 1.83 16 26 H 0.25 16.23 8.73 -92.71 -0.81 15.42 16 27 H 0.33 12.74 8.19 -89.70 -0.73 12.01 16 28 H 0.10 2.38 8.09 -2.39 -0.02 2.36 16 29 H 0.11 2.35 8.14 -2.39 -0.02 2.33 16 30 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 32 H 0.32 6.72 8.92 -89.69 -0.80 5.92 16 33 H 0.10 1.98 8.14 -2.38 -0.02 1.96 16 34 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 Total: -1.00 -64.44 269.86 -2.74 -67.18 By element: Atomic # 1 Polarization: 27.36 SS G_CDS: -0.60 Total: 26.76 kcal Atomic # 6 Polarization: -40.91 SS G_CDS: 3.37 Total: -37.54 kcal Atomic # 7 Polarization: -100.62 SS G_CDS: -7.32 Total: -107.94 kcal Atomic # 14 Polarization: 49.74 SS G_CDS: 1.81 Total: 51.54 kcal Total: -64.44 -2.74 -67.18 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246445475.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.821 kcal (2) G-P(sol) polarization free energy of solvation -64.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.177 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds