Wall clock time and date at job start Sun Mar 29 2020 21:51:13
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 C 1.52998 * 109.47548 * 2 1
4 4 H 1.08997 * 109.46658 * 55.00094 * 3 2 1
5 5 C 1.50696 * 109.47194 * 175.00030 * 3 2 1
6 6 H 1.07995 * 120.00487 * 119.99957 * 5 3 2
7 7 C 1.37879 * 120.00122 * 300.00114 * 5 3 2
8 8 N 1.31515 * 120.00617 * 180.02562 * 7 5 3
9 9 Si 1.86803 * 119.99841 * 359.97438 * 7 5 3
10 10 H 1.48496 * 109.47109 * 90.00070 * 9 7 5
11 11 H 1.48498 * 109.47093 * 210.00210 * 9 7 5
12 12 H 1.48501 * 109.47402 * 330.00334 * 9 7 5
13 13 N 1.46896 * 109.47145 * 295.00300 * 3 2 1
14 14 C 1.46893 * 111.00391 * 84.99456 * 13 3 2
15 15 H 1.09003 * 115.58953 * 350.82559 * 14 13 3
16 16 C 1.53203 * 117.52190 * 136.63901 * 14 13 3
17 17 C 1.52109 * 59.76372 * 107.42752 * 16 14 13
18 18 C 1.52652 * 129.73527 * 118.97994 * 17 16 14
19 19 N 1.47656 * 87.65126 * 113.71963 * 18 17 16
20 20 C 1.47659 * 88.13650 * 26.18688 * 19 18 17
21 21 H 1.08993 * 109.47138 * 300.00319 * 1 2 3
22 22 H 1.09007 * 109.47114 * 59.99757 * 1 2 3
23 23 H 1.09000 * 109.47414 * 179.97438 * 1 2 3
24 24 H 1.09006 * 109.46915 * 239.99915 * 2 1 3
25 25 H 1.09005 * 109.46942 * 120.00750 * 2 1 3
26 26 H 0.96990 * 120.00518 * 179.97438 * 8 7 5
27 27 H 1.00908 * 110.99899 * 321.03760 * 13 3 2
28 28 H 1.08999 * 117.52608 * 0.02562 * 16 14 13
29 29 H 1.09000 * 117.52691 * 214.84438 * 16 14 13
30 30 H 1.09005 * 113.52066 * 359.02543 * 18 17 16
31 31 H 1.08997 * 113.58507 * 228.42635 * 18 17 16
32 32 H 1.00901 * 111.00076 * 137.99713 * 19 18 17
33 33 H 1.08996 * 113.52414 * 88.51123 * 20 19 18
34 34 H 1.09005 * 113.52053 * 219.12097 * 20 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0401 1.4424 0.0000
4 1 1.6055 1.9814 0.8418
5 6 3.5420 1.4441 0.1238
6 1 4.1473 1.8886 -0.6522
7 6 4.1433 0.8782 1.2279
8 7 5.4540 0.8801 1.3363
9 14 3.0963 0.1099 2.5707
10 1 2.8743 -1.3261 2.2646
11 1 3.7941 0.2358 3.8755
12 1 1.7881 0.8093 2.6395
13 7 1.6515 2.0992 -1.2552
14 6 0.2914 2.6467 -1.1638
15 1 -0.2726 2.3606 -0.2760
16 6 0.0532 4.0493 -1.7323
17 6 -0.4828 2.8262 -2.4608
18 6 -1.9216 2.4447 -2.7992
19 7 -1.5687 2.6183 -4.2224
20 6 -0.1699 2.3109 -3.8632
21 1 -0.3633 0.5138 0.8899
22 1 -0.3634 0.5139 -0.8900
23 1 -0.3634 -1.0276 -0.0005
24 1 1.8933 -0.5139 -0.8900
25 1 1.8933 -0.5140 0.8900
26 1 5.8770 0.4823 2.1132
27 1 1.7344 1.4652 -2.0358
28 1 0.9056 4.5651 -2.1743
29 1 -0.6675 4.6854 -1.2184
30 1 -2.6580 3.1649 -2.4425
31 1 -2.1739 1.4176 -2.5357
32 1 -1.9673 1.8825 -4.7861
33 1 0.0633 1.2465 -3.8937
34 1 0.5602 2.9191 -4.3974
RHF calculation, no. of doubly occupied orbitals= 40
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001246445476.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 21:51:13
Heat of formation + Delta-G solvation = 69.743646 kcal
Electronic energy + Delta-G solvation = -14348.846273 eV
Core-core repulsion = 12090.869138 eV
Total energy + Delta-G solvation = -2257.977136 eV
No. of doubly occupied orbitals = 40
Molecular weight
(most abundant/longest-lived isotopes) = 210.143 amu
Computer time = 0.18 seconds
Orbital eigenvalues (eV)
-39.94765 -36.80949 -34.00354 -31.99553 -29.95287 -27.02113 -25.85357 -24.74026
-22.72558 -20.83633 -20.17860 -18.32219 -17.07671 -16.04619 -15.52746 -15.01907
-14.68848 -13.94090 -13.68017 -13.27148 -12.93685 -12.74941 -12.30158 -11.92710
-11.86778 -11.40477 -11.10782 -10.85343 -10.68380 -10.37851 -10.17566 -10.00868
-9.87734 -9.46466 -9.10357 -8.85624 -8.56745 -7.35874 -6.06142 -4.03764
3.23352 3.34173 3.36688 3.87480 4.31844 4.38464 4.43711 4.82904
4.97467 5.20866 5.27588 5.44125 5.59860 5.67920 5.72667 5.75062
5.82530 5.90024 5.96724 6.02986 6.07242 6.11714 6.41399 6.42069
6.47934 6.66553 6.72246 7.10546 7.20226 7.69455 7.91015 8.27279
8.67128 9.05380 9.56049 11.07281
Molecular weight = 210.14amu
Principal moments of inertia in cm(-1)
A = 0.049391 B = 0.008542 C = 0.007990
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 566.766510 B = 3277.242763 C = 3503.494881
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.160 4.160
2 C -0.161 4.161
3 C 0.191 3.809
4 H 0.036 0.964
5 C -0.500 4.500
6 H 0.082 0.918
7 C 0.068 3.932
8 N -0.900 5.900
9 Si 0.884 3.116
10 H -0.280 1.280
11 H -0.296 1.296
12 H -0.268 1.268
13 N -0.636 5.636
14 C 0.050 3.950
15 H 0.099 0.901
16 C -0.133 4.133
17 C -0.188 4.188
18 C 0.040 3.960
19 N -0.625 5.625
20 C 0.045 3.955
21 H 0.047 0.953
22 H 0.054 0.946
23 H 0.040 0.960
24 H 0.059 0.941
25 H 0.054 0.946
26 H 0.263 0.737
27 H 0.333 0.667
28 H 0.101 0.899
29 H 0.090 0.910
30 H 0.081 0.919
31 H 0.064 0.936
32 H 0.315 0.685
33 H 0.066 0.934
34 H 0.086 0.914
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.574 0.102 -5.884 14.795
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.217 4.217
2 C -0.201 4.201
3 C 0.082 3.918
4 H 0.054 0.946
5 C -0.538 4.538
6 H 0.100 0.900
7 C -0.133 4.133
8 N -0.538 5.538
9 Si 0.714 3.286
10 H -0.208 1.208
11 H -0.224 1.224
12 H -0.193 1.193
13 N -0.265 5.265
14 C -0.062 4.062
15 H 0.116 0.884
16 C -0.172 4.172
17 C -0.190 4.190
18 C -0.090 4.090
19 N -0.249 5.249
20 C -0.085 4.085
21 H 0.066 0.934
22 H 0.073 0.927
23 H 0.059 0.941
24 H 0.078 0.922
25 H 0.072 0.928
26 H 0.073 0.927
27 H 0.152 0.848
28 H 0.119 0.881
29 H 0.109 0.891
30 H 0.099 0.901
31 H 0.082 0.918
32 H 0.126 0.874
33 H 0.084 0.916
34 H 0.104 0.896
Dipole moment (debyes) X Y Z Total
from point charges -13.147 1.495 -5.822 14.456
hybrid contribution -0.965 -2.408 0.975 2.771
sum -14.112 -0.913 -4.847 14.949
Atomic orbital electron populations
1.22074 0.98187 1.00337 1.01123 1.22703 0.93390 1.02326 1.01633
1.19735 0.96844 0.87525 0.87693 0.94570 1.20975 0.88849 1.37123
1.06862 0.90000 1.24935 0.94757 0.95903 0.97736 1.69876 1.08586
1.45645 1.29741 0.86922 0.80664 0.79579 0.81408 1.20765 1.22383
1.19268 1.60331 1.18384 1.40988 1.06796 1.22526 0.90988 0.98605
0.94128 0.88389 1.22953 1.01620 0.91000 1.01594 1.22430 0.95496
1.06717 0.94336 1.23069 0.96020 1.00121 0.89837 1.67330 1.04896
1.45330 1.07348 1.22946 0.92477 0.99506 0.93557 0.93428 0.92662
0.94054 0.92191 0.92770 0.92657 0.84793 0.88070 0.89146 0.90097
0.91761 0.87358 0.91593 0.89585
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -2.68 8.58 37.16 0.32 -2.37 16
2 C -0.16 -3.35 4.90 -26.73 -0.13 -3.48 16
3 C 0.19 4.38 1.76 -68.87 -0.12 4.26 16
4 H 0.04 0.88 6.79 -51.93 -0.35 0.52 16
5 C -0.50 -13.95 9.42 -34.44 -0.32 -14.27 16
6 H 0.08 2.52 8.06 -52.49 -0.42 2.10 16
7 C 0.07 1.95 5.45 -17.82 -0.10 1.85 16
8 N -0.90 -27.48 13.96 55.43 0.77 -26.71 16
9 Si 0.88 21.71 24.41 -169.99 -4.15 17.56 16
10 H -0.28 -6.72 6.83 56.52 0.39 -6.33 16
11 H -0.30 -7.34 7.11 56.52 0.40 -6.93 16
12 H -0.27 -6.28 6.53 56.52 0.37 -5.91 16
13 N -0.64 -12.60 6.43 -101.33 -0.65 -13.26 16
14 C 0.05 0.82 4.03 -68.06 -0.27 0.54 16
15 H 0.10 1.63 6.09 -51.93 -0.32 1.32 16
16 C -0.13 -2.01 10.46 -27.08 -0.28 -2.29 16
17 C -0.19 -2.63 3.23 -155.77 -0.50 -3.14 16
18 C 0.04 0.48 8.64 -6.79 -0.06 0.42 16
19 N -0.63 -7.56 8.71 -122.06 -1.06 -8.62 16
20 C 0.05 0.59 8.22 -6.78 -0.06 0.53 16
21 H 0.05 0.79 7.92 -51.93 -0.41 0.38 16
22 H 0.05 0.84 5.75 -51.92 -0.30 0.55 16
23 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16
24 H 0.06 1.21 8.04 -51.93 -0.42 0.80 16
25 H 0.05 1.22 3.22 -51.93 -0.17 1.05 16
26 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16
27 H 0.33 6.25 7.99 -39.29 -0.31 5.94 16
28 H 0.10 1.61 8.14 -51.93 -0.42 1.19 16
29 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16
30 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16
31 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16
32 H 0.31 3.13 8.91 -39.29 -0.35 2.78 16
33 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16
34 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16
LS Contribution 266.73 15.07 4.02 4.02
Total: -1.00 -29.60 266.73 -7.79 -37.39
By element:
Atomic # 1 Polarization: 12.75 SS G_CDS: -5.19 Total: 7.55 kcal
Atomic # 6 Polarization: -16.41 SS G_CDS: -1.53 Total: -17.94 kcal
Atomic # 7 Polarization: -47.65 SS G_CDS: -0.94 Total: -48.59 kcal
Atomic # 14 Polarization: 21.71 SS G_CDS: -4.15 Total: 17.56 kcal
Total LS contribution 4.02 Total: 4.02 kcal
Total: -29.60 -7.79 -37.39 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001246445476.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 107.138 kcal
(2) G-P(sol) polarization free energy of solvation -29.601 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.537 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.793 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.394 kcal
(6) G-S(sol) free energy of system = (1) + (5) 69.744 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.18 seconds