Wall clock time and date at job start Sun Mar 29 2020 21:51:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47548 * 2 1 4 4 H 1.08997 * 109.46658 * 55.00094 * 3 2 1 5 5 C 1.50696 * 109.47194 * 175.00030 * 3 2 1 6 6 H 1.07995 * 120.00487 * 119.99957 * 5 3 2 7 7 C 1.37879 * 120.00122 * 300.00114 * 5 3 2 8 8 N 1.31515 * 120.00617 * 180.02562 * 7 5 3 9 9 Si 1.86803 * 119.99841 * 359.97438 * 7 5 3 10 10 H 1.48496 * 109.47109 * 90.00070 * 9 7 5 11 11 H 1.48498 * 109.47093 * 210.00210 * 9 7 5 12 12 H 1.48501 * 109.47402 * 330.00334 * 9 7 5 13 13 N 1.46896 * 109.47145 * 295.00300 * 3 2 1 14 14 C 1.46893 * 111.00391 * 84.99456 * 13 3 2 15 15 H 1.09003 * 115.58953 * 350.82559 * 14 13 3 16 16 C 1.53203 * 117.52190 * 136.63901 * 14 13 3 17 17 C 1.52109 * 59.76372 * 107.42752 * 16 14 13 18 18 C 1.52652 * 129.73527 * 118.97994 * 17 16 14 19 19 N 1.47656 * 87.65126 * 113.71963 * 18 17 16 20 20 C 1.47659 * 88.13650 * 26.18688 * 19 18 17 21 21 H 1.08993 * 109.47138 * 300.00319 * 1 2 3 22 22 H 1.09007 * 109.47114 * 59.99757 * 1 2 3 23 23 H 1.09000 * 109.47414 * 179.97438 * 1 2 3 24 24 H 1.09006 * 109.46915 * 239.99915 * 2 1 3 25 25 H 1.09005 * 109.46942 * 120.00750 * 2 1 3 26 26 H 0.96990 * 120.00518 * 179.97438 * 8 7 5 27 27 H 1.00908 * 110.99899 * 321.03760 * 13 3 2 28 28 H 1.08999 * 117.52608 * 0.02562 * 16 14 13 29 29 H 1.09000 * 117.52691 * 214.84438 * 16 14 13 30 30 H 1.09005 * 113.52066 * 359.02543 * 18 17 16 31 31 H 1.08997 * 113.58507 * 228.42635 * 18 17 16 32 32 H 1.00901 * 111.00076 * 137.99713 * 19 18 17 33 33 H 1.08996 * 113.52414 * 88.51123 * 20 19 18 34 34 H 1.09005 * 113.52053 * 219.12097 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9814 0.8418 5 6 3.5420 1.4441 0.1238 6 1 4.1473 1.8886 -0.6522 7 6 4.1433 0.8782 1.2279 8 7 5.4540 0.8801 1.3363 9 14 3.0963 0.1099 2.5707 10 1 2.8743 -1.3261 2.2646 11 1 3.7941 0.2358 3.8755 12 1 1.7881 0.8093 2.6395 13 7 1.6515 2.0992 -1.2552 14 6 0.2914 2.6467 -1.1638 15 1 -0.2726 2.3606 -0.2760 16 6 0.0532 4.0493 -1.7323 17 6 -0.4828 2.8262 -2.4608 18 6 -1.9216 2.4447 -2.7992 19 7 -1.5687 2.6183 -4.2224 20 6 -0.1699 2.3109 -3.8632 21 1 -0.3633 0.5138 0.8899 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5140 0.8900 26 1 5.8770 0.4823 2.1132 27 1 1.7344 1.4652 -2.0358 28 1 0.9056 4.5651 -2.1743 29 1 -0.6675 4.6854 -1.2184 30 1 -2.6580 3.1649 -2.4425 31 1 -2.1739 1.4176 -2.5357 32 1 -1.9673 1.8825 -4.7861 33 1 0.0633 1.2465 -3.8937 34 1 0.5602 2.9191 -4.3974 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001246445476.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:13 Heat of formation + Delta-G solvation = 69.743646 kcal Electronic energy + Delta-G solvation = -14348.846273 eV Core-core repulsion = 12090.869138 eV Total energy + Delta-G solvation = -2257.977136 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.94765 -36.80949 -34.00354 -31.99553 -29.95287 -27.02113 -25.85357 -24.74026 -22.72558 -20.83633 -20.17860 -18.32219 -17.07671 -16.04619 -15.52746 -15.01907 -14.68848 -13.94090 -13.68017 -13.27148 -12.93685 -12.74941 -12.30158 -11.92710 -11.86778 -11.40477 -11.10782 -10.85343 -10.68380 -10.37851 -10.17566 -10.00868 -9.87734 -9.46466 -9.10357 -8.85624 -8.56745 -7.35874 -6.06142 -4.03764 3.23352 3.34173 3.36688 3.87480 4.31844 4.38464 4.43711 4.82904 4.97467 5.20866 5.27588 5.44125 5.59860 5.67920 5.72667 5.75062 5.82530 5.90024 5.96724 6.02986 6.07242 6.11714 6.41399 6.42069 6.47934 6.66553 6.72246 7.10546 7.20226 7.69455 7.91015 8.27279 8.67128 9.05380 9.56049 11.07281 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.049391 B = 0.008542 C = 0.007990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.766510 B = 3277.242763 C = 3503.494881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.161 4.161 3 C 0.191 3.809 4 H 0.036 0.964 5 C -0.500 4.500 6 H 0.082 0.918 7 C 0.068 3.932 8 N -0.900 5.900 9 Si 0.884 3.116 10 H -0.280 1.280 11 H -0.296 1.296 12 H -0.268 1.268 13 N -0.636 5.636 14 C 0.050 3.950 15 H 0.099 0.901 16 C -0.133 4.133 17 C -0.188 4.188 18 C 0.040 3.960 19 N -0.625 5.625 20 C 0.045 3.955 21 H 0.047 0.953 22 H 0.054 0.946 23 H 0.040 0.960 24 H 0.059 0.941 25 H 0.054 0.946 26 H 0.263 0.737 27 H 0.333 0.667 28 H 0.101 0.899 29 H 0.090 0.910 30 H 0.081 0.919 31 H 0.064 0.936 32 H 0.315 0.685 33 H 0.066 0.934 34 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.574 0.102 -5.884 14.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.201 4.201 3 C 0.082 3.918 4 H 0.054 0.946 5 C -0.538 4.538 6 H 0.100 0.900 7 C -0.133 4.133 8 N -0.538 5.538 9 Si 0.714 3.286 10 H -0.208 1.208 11 H -0.224 1.224 12 H -0.193 1.193 13 N -0.265 5.265 14 C -0.062 4.062 15 H 0.116 0.884 16 C -0.172 4.172 17 C -0.190 4.190 18 C -0.090 4.090 19 N -0.249 5.249 20 C -0.085 4.085 21 H 0.066 0.934 22 H 0.073 0.927 23 H 0.059 0.941 24 H 0.078 0.922 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.152 0.848 28 H 0.119 0.881 29 H 0.109 0.891 30 H 0.099 0.901 31 H 0.082 0.918 32 H 0.126 0.874 33 H 0.084 0.916 34 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -13.147 1.495 -5.822 14.456 hybrid contribution -0.965 -2.408 0.975 2.771 sum -14.112 -0.913 -4.847 14.949 Atomic orbital electron populations 1.22074 0.98187 1.00337 1.01123 1.22703 0.93390 1.02326 1.01633 1.19735 0.96844 0.87525 0.87693 0.94570 1.20975 0.88849 1.37123 1.06862 0.90000 1.24935 0.94757 0.95903 0.97736 1.69876 1.08586 1.45645 1.29741 0.86922 0.80664 0.79579 0.81408 1.20765 1.22383 1.19268 1.60331 1.18384 1.40988 1.06796 1.22526 0.90988 0.98605 0.94128 0.88389 1.22953 1.01620 0.91000 1.01594 1.22430 0.95496 1.06717 0.94336 1.23069 0.96020 1.00121 0.89837 1.67330 1.04896 1.45330 1.07348 1.22946 0.92477 0.99506 0.93557 0.93428 0.92662 0.94054 0.92191 0.92770 0.92657 0.84793 0.88070 0.89146 0.90097 0.91761 0.87358 0.91593 0.89585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.68 8.58 37.16 0.32 -2.37 16 2 C -0.16 -3.35 4.90 -26.73 -0.13 -3.48 16 3 C 0.19 4.38 1.76 -68.87 -0.12 4.26 16 4 H 0.04 0.88 6.79 -51.93 -0.35 0.52 16 5 C -0.50 -13.95 9.42 -34.44 -0.32 -14.27 16 6 H 0.08 2.52 8.06 -52.49 -0.42 2.10 16 7 C 0.07 1.95 5.45 -17.82 -0.10 1.85 16 8 N -0.90 -27.48 13.96 55.43 0.77 -26.71 16 9 Si 0.88 21.71 24.41 -169.99 -4.15 17.56 16 10 H -0.28 -6.72 6.83 56.52 0.39 -6.33 16 11 H -0.30 -7.34 7.11 56.52 0.40 -6.93 16 12 H -0.27 -6.28 6.53 56.52 0.37 -5.91 16 13 N -0.64 -12.60 6.43 -101.33 -0.65 -13.26 16 14 C 0.05 0.82 4.03 -68.06 -0.27 0.54 16 15 H 0.10 1.63 6.09 -51.93 -0.32 1.32 16 16 C -0.13 -2.01 10.46 -27.08 -0.28 -2.29 16 17 C -0.19 -2.63 3.23 -155.77 -0.50 -3.14 16 18 C 0.04 0.48 8.64 -6.79 -0.06 0.42 16 19 N -0.63 -7.56 8.71 -122.06 -1.06 -8.62 16 20 C 0.05 0.59 8.22 -6.78 -0.06 0.53 16 21 H 0.05 0.79 7.92 -51.93 -0.41 0.38 16 22 H 0.05 0.84 5.75 -51.92 -0.30 0.55 16 23 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.06 1.21 8.04 -51.93 -0.42 0.80 16 25 H 0.05 1.22 3.22 -51.93 -0.17 1.05 16 26 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 27 H 0.33 6.25 7.99 -39.29 -0.31 5.94 16 28 H 0.10 1.61 8.14 -51.93 -0.42 1.19 16 29 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.31 3.13 8.91 -39.29 -0.35 2.78 16 33 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 266.73 15.07 4.02 4.02 Total: -1.00 -29.60 266.73 -7.79 -37.39 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: -5.19 Total: 7.55 kcal Atomic # 6 Polarization: -16.41 SS G_CDS: -1.53 Total: -17.94 kcal Atomic # 7 Polarization: -47.65 SS G_CDS: -0.94 Total: -48.59 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.15 Total: 17.56 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -29.60 -7.79 -37.39 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246445476.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.138 kcal (2) G-P(sol) polarization free energy of solvation -29.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds