Wall clock time and date at job start Sun Mar 29 2020 21:51:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47548 * 2 1 4 4 H 1.08997 * 109.46658 * 55.00094 * 3 2 1 5 5 C 1.50696 * 109.47194 * 175.00030 * 3 2 1 6 6 H 1.07995 * 120.00487 * 119.99957 * 5 3 2 7 7 C 1.37879 * 120.00122 * 300.00114 * 5 3 2 8 8 N 1.31515 * 120.00617 * 180.02562 * 7 5 3 9 9 Si 1.86803 * 119.99841 * 359.97438 * 7 5 3 10 10 H 1.48496 * 109.47109 * 90.00070 * 9 7 5 11 11 H 1.48498 * 109.47093 * 210.00210 * 9 7 5 12 12 H 1.48501 * 109.47402 * 330.00334 * 9 7 5 13 13 N 1.46896 * 109.47145 * 295.00300 * 3 2 1 14 14 C 1.46893 * 111.00391 * 84.99456 * 13 3 2 15 15 H 1.09003 * 115.58953 * 350.82559 * 14 13 3 16 16 C 1.53203 * 117.52190 * 136.63901 * 14 13 3 17 17 C 1.52109 * 59.76372 * 107.42752 * 16 14 13 18 18 C 1.52652 * 129.73527 * 118.97994 * 17 16 14 19 19 N 1.47656 * 87.65126 * 113.71963 * 18 17 16 20 20 C 1.47659 * 88.13650 * 26.18688 * 19 18 17 21 21 H 1.08993 * 109.47138 * 300.00319 * 1 2 3 22 22 H 1.09007 * 109.47114 * 59.99757 * 1 2 3 23 23 H 1.09000 * 109.47414 * 179.97438 * 1 2 3 24 24 H 1.09006 * 109.46915 * 239.99915 * 2 1 3 25 25 H 1.09005 * 109.46942 * 120.00750 * 2 1 3 26 26 H 0.96990 * 120.00518 * 179.97438 * 8 7 5 27 27 H 1.00908 * 110.99899 * 321.03760 * 13 3 2 28 28 H 1.08999 * 117.52608 * 0.02562 * 16 14 13 29 29 H 1.09000 * 117.52691 * 214.84438 * 16 14 13 30 30 H 1.09005 * 113.52066 * 359.02543 * 18 17 16 31 31 H 1.08997 * 113.58507 * 228.42635 * 18 17 16 32 32 H 1.00901 * 111.00076 * 137.99713 * 19 18 17 33 33 H 1.08996 * 113.52414 * 88.51123 * 20 19 18 34 34 H 1.09005 * 113.52053 * 219.12097 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9814 0.8418 5 6 3.5420 1.4441 0.1238 6 1 4.1473 1.8886 -0.6522 7 6 4.1433 0.8782 1.2279 8 7 5.4540 0.8801 1.3363 9 14 3.0963 0.1099 2.5707 10 1 2.8743 -1.3261 2.2646 11 1 3.7941 0.2358 3.8755 12 1 1.7881 0.8093 2.6395 13 7 1.6515 2.0992 -1.2552 14 6 0.2914 2.6467 -1.1638 15 1 -0.2726 2.3606 -0.2760 16 6 0.0532 4.0493 -1.7323 17 6 -0.4828 2.8262 -2.4608 18 6 -1.9216 2.4447 -2.7992 19 7 -1.5687 2.6183 -4.2224 20 6 -0.1699 2.3109 -3.8632 21 1 -0.3633 0.5138 0.8899 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5140 0.8900 26 1 5.8770 0.4823 2.1132 27 1 1.7344 1.4652 -2.0358 28 1 0.9056 4.5651 -2.1743 29 1 -0.6675 4.6854 -1.2184 30 1 -2.6580 3.1649 -2.4425 31 1 -2.1739 1.4176 -2.5357 32 1 -1.9673 1.8825 -4.7861 33 1 0.0633 1.2465 -3.8937 34 1 0.5602 2.9191 -4.3974 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001246445476.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:13 Heat of formation + Delta-G solvation = 45.558337 kcal Electronic energy + Delta-G solvation = -14349.895027 eV Core-core repulsion = 12090.869138 eV Total energy + Delta-G solvation = -2259.025889 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.04659 -38.33030 -35.43024 -34.01654 -31.41848 -28.88576 -26.82490 -25.76967 -24.48636 -22.18731 -21.90069 -19.50539 -18.76384 -17.46690 -17.15522 -16.33920 -16.01276 -15.49054 -15.25343 -14.69950 -14.34363 -14.05220 -13.75769 -13.53018 -13.20325 -12.84042 -12.60648 -12.49865 -12.40900 -11.78500 -11.57589 -11.43834 -11.31864 -11.11902 -10.92548 -10.72573 -9.84109 -8.86566 -8.27489 -6.29997 1.28558 1.34837 1.44863 2.31592 2.76062 3.06031 3.10668 3.41996 3.65281 3.80999 4.17909 4.24054 4.32535 4.36108 4.41539 4.60758 4.64281 4.73316 4.78061 4.85339 4.97325 5.01557 5.02394 5.07784 5.10035 5.16132 5.23998 5.47203 5.67456 6.06626 6.36004 6.69672 6.73318 6.78238 7.35081 8.89942 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.049391 B = 0.008542 C = 0.007990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.766510 B = 3277.242763 C = 3503.494881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.159 4.159 3 C 0.199 3.801 4 H 0.028 0.972 5 C -0.507 4.507 6 H 0.034 0.966 7 C 0.009 3.991 8 N -0.951 5.951 9 Si 0.951 3.049 10 H -0.267 1.267 11 H -0.300 1.300 12 H -0.247 1.247 13 N -0.650 5.650 14 C 0.033 3.967 15 H 0.103 0.897 16 C -0.139 4.139 17 C -0.175 4.175 18 C 0.048 3.952 19 N -0.631 5.631 20 C 0.043 3.957 21 H 0.050 0.950 22 H 0.070 0.930 23 H 0.063 0.937 24 H 0.058 0.942 25 H 0.038 0.962 26 H 0.265 0.735 27 H 0.336 0.664 28 H 0.085 0.915 29 H 0.109 0.891 30 H 0.090 0.910 31 H 0.083 0.917 32 H 0.330 0.670 33 H 0.077 0.923 34 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.822 -0.712 -5.897 17.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.198 4.198 3 C 0.090 3.910 4 H 0.046 0.954 5 C -0.545 4.545 6 H 0.052 0.948 7 C -0.188 4.188 8 N -0.592 5.592 9 Si 0.778 3.222 10 H -0.193 1.193 11 H -0.228 1.228 12 H -0.171 1.171 13 N -0.280 5.280 14 C -0.079 4.079 15 H 0.121 0.879 16 C -0.177 4.177 17 C -0.177 4.177 18 C -0.082 4.082 19 N -0.256 5.256 20 C -0.087 4.087 21 H 0.069 0.931 22 H 0.089 0.911 23 H 0.082 0.918 24 H 0.077 0.923 25 H 0.057 0.943 26 H 0.074 0.926 27 H 0.155 0.845 28 H 0.104 0.896 29 H 0.127 0.873 30 H 0.108 0.892 31 H 0.101 0.899 32 H 0.144 0.856 33 H 0.095 0.905 34 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -16.431 0.687 -5.865 17.460 hybrid contribution 0.100 -2.066 0.846 2.235 sum -16.331 -1.378 -5.018 17.140 Atomic orbital electron populations 1.21986 0.94544 1.02182 1.02095 1.22550 0.96602 0.99841 1.00811 1.19430 0.93292 0.89441 0.88859 0.95419 1.21311 0.91706 1.35993 1.05514 0.94802 1.25816 0.95881 0.96616 1.00483 1.70045 1.10812 1.47489 1.30885 0.85819 0.79477 0.79361 0.77525 1.19287 1.22789 1.17064 1.60130 1.21394 1.40878 1.05557 1.22463 0.89710 0.99672 0.96009 0.87902 1.22989 1.01783 0.90987 1.01986 1.22504 0.97103 1.04706 0.93414 1.23120 0.94374 1.01406 0.89319 1.67287 1.04192 1.46305 1.07855 1.22983 0.93022 0.99972 0.92749 0.93057 0.91138 0.91765 0.92322 0.94328 0.92619 0.84462 0.89637 0.87322 0.89198 0.89889 0.85646 0.90459 0.90657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.47 8.58 71.98 0.62 -3.85 16 2 C -0.16 -6.26 4.90 30.59 0.15 -6.11 16 3 C 0.20 9.05 1.76 44.17 0.08 9.13 16 4 H 0.03 1.31 6.79 -2.39 -0.02 1.30 16 5 C -0.51 -29.18 9.42 25.60 0.24 -28.94 16 6 H 0.03 2.21 8.06 -2.91 -0.02 2.18 16 7 C 0.01 0.51 5.45 84.66 0.46 0.97 16 8 N -0.95 -60.19 13.96 21.45 0.30 -59.89 16 9 Si 0.95 44.81 24.41 68.60 1.67 46.49 16 10 H -0.27 -11.90 6.83 99.48 0.68 -11.22 16 11 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 12 H -0.25 -10.68 6.53 99.48 0.65 -10.04 16 13 N -0.65 -25.52 6.43 -474.50 -3.05 -28.57 16 14 C 0.03 1.02 4.03 44.69 0.18 1.20 16 15 H 0.10 3.13 6.09 -2.39 -0.01 3.12 16 16 C -0.14 -3.98 10.46 30.37 0.32 -3.67 16 17 C -0.18 -4.46 3.23 -53.00 -0.17 -4.63 16 18 C 0.05 0.95 8.64 83.97 0.73 1.68 16 19 N -0.63 -13.21 8.71 -540.09 -4.70 -17.91 16 20 C 0.04 1.01 8.22 83.97 0.69 1.70 16 21 H 0.05 1.49 7.92 -2.39 -0.02 1.47 16 22 H 0.07 1.87 5.75 -2.38 -0.01 1.85 16 23 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 24 H 0.06 2.29 8.04 -2.38 -0.02 2.27 16 25 H 0.04 1.64 3.22 -2.38 -0.01 1.63 16 26 H 0.26 15.68 8.31 -92.72 -0.77 14.91 16 27 H 0.34 12.48 7.99 -89.69 -0.72 11.76 16 28 H 0.09 2.70 8.14 -2.39 -0.02 2.68 16 29 H 0.11 2.67 8.14 -2.39 -0.02 2.65 16 30 H 0.09 1.69 8.14 -2.38 -0.02 1.67 16 31 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.33 5.38 8.91 -89.69 -0.80 4.58 16 33 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.07 1.94 8.14 -2.38 -0.02 1.92 16 Total: -1.00 -65.53 266.73 -2.99 -68.52 By element: Atomic # 1 Polarization: 24.38 SS G_CDS: -0.50 Total: 23.88 kcal Atomic # 6 Polarization: -35.81 SS G_CDS: 3.29 Total: -32.52 kcal Atomic # 7 Polarization: -98.91 SS G_CDS: -7.45 Total: -106.37 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 1.67 Total: 46.49 kcal Total: -65.53 -2.99 -68.52 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246445476.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.080 kcal (2) G-P(sol) polarization free energy of solvation -65.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.522 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds