Wall clock time and date at job start Sun Mar 29 2020 21:51:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53008 * 109.46650 * 2 1 4 4 H 1.09004 * 109.46549 * 304.99263 * 3 2 1 5 5 C 1.50701 * 109.46964 * 185.00029 * 3 2 1 6 6 H 1.08003 * 119.99842 * 240.00221 * 5 3 2 7 7 C 1.37882 * 120.00261 * 59.99285 * 5 3 2 8 8 N 1.31519 * 119.99734 * 0.02562 * 7 5 3 9 9 Si 1.86793 * 120.00104 * 180.02562 * 7 5 3 10 10 H 1.48492 * 109.47347 * 60.00085 * 9 7 5 11 11 H 1.48504 * 109.47042 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.47008 * 299.99864 * 9 7 5 13 13 N 1.46897 * 109.47545 * 64.99657 * 3 2 1 14 14 C 1.46901 * 111.00123 * 274.99869 * 13 3 2 15 15 H 1.09000 * 115.56234 * 9.22632 * 14 13 3 16 16 C 1.53203 * 117.56644 * 223.37133 * 14 13 3 17 17 C 1.52109 * 117.52244 * 154.99625 * 14 13 3 18 18 C 1.52652 * 129.73527 * 226.45525 * 17 14 13 19 19 N 1.47656 * 87.65126 * 113.71963 * 18 17 14 20 20 C 1.47659 * 88.13650 * 26.18688 * 19 18 17 21 21 H 1.09006 * 109.47299 * 60.00792 * 1 2 3 22 22 H 1.09004 * 109.47273 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47530 * 300.00491 * 1 2 3 24 24 H 1.08991 * 109.47109 * 239.99704 * 2 1 3 25 25 H 1.08997 * 109.47112 * 119.98966 * 2 1 3 26 26 H 0.97000 * 119.99849 * 179.97438 * 8 7 5 27 27 H 1.00897 * 111.00149 * 151.04400 * 13 3 2 28 28 H 1.09003 * 117.51992 * 145.17510 * 16 14 13 29 29 H 1.08997 * 117.51913 * 0.02562 * 16 14 13 30 30 H 1.09005 * 113.52066 * 359.02543 * 18 17 14 31 31 H 1.08997 * 113.58507 * 228.42635 * 18 17 14 32 32 H 1.00901 * 111.00076 * 137.99713 * 19 18 17 33 33 H 1.08996 * 113.52414 * 88.51123 * 20 19 18 34 34 H 1.09005 * 113.52053 * 219.12097 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9815 -0.8420 5 6 3.5418 1.4445 -0.1238 6 1 4.1471 1.8891 0.6523 7 6 4.1433 0.8785 -1.2279 8 7 3.4062 0.3374 -2.1732 9 14 6.0049 0.8802 -1.3810 10 1 6.5966 0.1456 -0.2342 11 1 6.3978 0.2168 -2.6502 12 1 6.5003 2.2802 -1.3809 13 7 1.6512 2.0994 1.2551 14 6 0.2911 2.6469 1.1636 15 1 -0.2728 2.3597 0.2761 16 6 0.0516 4.0495 1.7315 17 6 -0.4832 2.8262 2.4606 18 6 -1.9216 2.4436 2.7992 19 7 -1.3712 1.4606 3.7536 20 6 -0.1697 2.3119 3.8633 21 1 -0.3634 0.5137 -0.8901 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8899 24 1 1.8933 -0.5138 -0.8899 25 1 1.8933 -0.5137 0.8901 26 1 3.8293 -0.0605 -2.9501 27 1 2.3136 2.8173 1.5078 28 1 -0.6696 4.6847 1.2173 29 1 0.9038 4.5664 2.1728 30 1 -2.4582 1.9883 1.9667 31 1 -2.4852 3.2451 3.2767 32 1 -1.8949 1.4615 4.6161 33 1 -0.2480 3.0776 4.6350 34 1 0.7603 1.7463 3.9215 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001246445478.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:15 Heat of formation + Delta-G solvation = 61.300490 kcal Electronic energy + Delta-G solvation = -14308.979246 eV Core-core repulsion = 12050.635987 eV Total energy + Delta-G solvation = -2258.343258 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.70296 -36.31140 -33.83769 -31.64010 -29.73331 -26.31700 -25.62338 -24.39024 -22.81269 -20.97588 -19.42949 -18.08522 -16.57842 -15.94111 -15.18636 -14.77819 -14.48608 -13.97216 -13.20147 -12.80968 -12.36667 -12.23825 -12.01032 -11.89016 -11.62332 -11.10582 -10.85188 -10.68721 -10.24950 -10.20026 -10.04887 -9.95172 -9.52828 -9.29718 -8.79777 -8.60697 -8.38869 -7.15039 -6.01199 -4.08199 3.31787 3.36417 3.39058 4.05648 4.38516 4.54457 4.61240 5.01846 5.17800 5.29300 5.40776 5.62771 5.77816 5.87415 5.99415 6.08224 6.18125 6.23326 6.35976 6.43410 6.44161 6.57114 6.73928 7.14721 7.22420 7.43654 7.45431 7.63847 7.79177 7.92728 8.32669 8.42115 8.66059 9.01867 9.57254 11.04269 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.047767 B = 0.008012 C = 0.007542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.033934 B = 3494.025444 C = 3711.785015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.105 4.105 3 C 0.221 3.779 4 H 0.004 0.996 5 C -0.521 4.521 6 H 0.059 0.941 7 C 0.063 3.937 8 N -0.888 5.888 9 Si 0.897 3.103 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.278 1.278 13 N -0.652 5.652 14 C 0.088 3.912 15 H 0.109 0.891 16 C -0.201 4.201 17 C -0.168 4.168 18 C 0.040 3.960 19 N -0.617 5.617 20 C 0.047 3.953 21 H 0.032 0.968 22 H 0.027 0.973 23 H 0.058 0.942 24 H 0.089 0.911 25 H 0.037 0.963 26 H 0.262 0.738 27 H 0.333 0.667 28 H 0.088 0.912 29 H 0.093 0.907 30 H 0.080 0.920 31 H 0.060 0.940 32 H 0.310 0.690 33 H 0.055 0.945 34 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.632 5.017 7.551 11.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.144 4.144 3 C 0.113 3.887 4 H 0.022 0.978 5 C -0.560 4.560 6 H 0.077 0.923 7 C -0.139 4.139 8 N -0.526 5.526 9 Si 0.724 3.276 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.204 1.204 13 N -0.281 5.281 14 C -0.024 4.024 15 H 0.126 0.874 16 C -0.241 4.241 17 C -0.170 4.170 18 C -0.091 4.091 19 N -0.241 5.241 20 C -0.083 4.083 21 H 0.051 0.949 22 H 0.046 0.954 23 H 0.076 0.924 24 H 0.107 0.893 25 H 0.056 0.944 26 H 0.072 0.928 27 H 0.153 0.847 28 H 0.107 0.893 29 H 0.111 0.889 30 H 0.098 0.902 31 H 0.078 0.922 32 H 0.122 0.878 33 H 0.073 0.927 34 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -7.565 3.558 7.213 11.042 hybrid contribution 0.776 1.605 -0.083 1.785 sum -6.790 5.164 7.130 11.118 Atomic orbital electron populations 1.22014 0.99605 0.99150 1.00144 1.21509 0.91592 0.99348 1.01919 1.19154 0.94462 0.91162 0.83874 0.97850 1.21230 0.91230 1.38284 1.05221 0.92312 1.24907 0.98253 0.95112 0.95620 1.69887 1.34962 1.38320 1.09440 0.86589 0.85499 0.78159 0.77309 1.20211 1.21300 1.20375 1.60291 0.99338 1.31587 1.36858 1.22361 0.93535 0.93147 0.93361 0.87385 1.23384 1.03344 0.92019 1.05328 1.22307 0.95562 1.03249 0.95869 1.23052 0.95041 0.93780 0.97185 1.67374 1.05946 1.38348 1.12392 1.22925 0.96705 0.94593 0.94096 0.94862 0.95378 0.92352 0.89303 0.94374 0.92846 0.84721 0.89314 0.88873 0.90172 0.92211 0.87822 0.92677 0.88735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.26 8.58 37.16 0.32 -2.94 16 2 C -0.11 -2.62 5.45 -26.73 -0.15 -2.76 16 3 C 0.22 5.54 2.19 -68.86 -0.15 5.39 16 4 H 0.00 0.10 7.73 -51.93 -0.40 -0.30 16 5 C -0.52 -14.21 8.59 -34.44 -0.30 -14.50 16 6 H 0.06 1.57 7.62 -52.48 -0.40 1.17 16 7 C 0.06 1.74 5.29 -17.82 -0.09 1.64 16 8 N -0.89 -25.28 11.30 55.43 0.63 -24.65 16 9 Si 0.90 21.24 29.54 -169.99 -5.02 16.22 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 13 N -0.65 -13.84 6.53 -101.32 -0.66 -14.50 16 14 C 0.09 1.61 4.09 -68.06 -0.28 1.33 16 15 H 0.11 2.09 6.09 -51.93 -0.32 1.78 16 16 C -0.20 -3.01 10.23 -27.08 -0.28 -3.29 16 17 C -0.17 -2.60 3.28 -155.77 -0.51 -3.11 16 18 C 0.04 0.54 8.64 -6.79 -0.06 0.48 16 19 N -0.62 -8.86 8.71 -122.06 -1.06 -9.92 16 20 C 0.05 0.69 8.64 -6.78 -0.06 0.63 16 21 H 0.03 0.69 7.92 -51.93 -0.41 0.28 16 22 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 23 H 0.06 1.22 5.75 -51.93 -0.30 0.92 16 24 H 0.09 2.44 5.95 -51.93 -0.31 2.13 16 25 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 26 H 0.26 7.12 8.31 -40.82 -0.34 6.79 16 27 H 0.33 6.92 8.02 -39.29 -0.32 6.60 16 28 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 29 H 0.09 1.35 8.09 -51.93 -0.42 0.93 16 30 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.31 3.58 8.91 -39.29 -0.35 3.23 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.09 1.59 8.14 -51.93 -0.42 1.16 16 LS Contribution 273.77 15.07 4.13 4.13 Total: -1.00 -28.24 273.77 -8.86 -37.10 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: -5.32 Total: 8.78 kcal Atomic # 6 Polarization: -15.59 SS G_CDS: -1.55 Total: -17.14 kcal Atomic # 7 Polarization: -47.98 SS G_CDS: -1.10 Total: -49.08 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -28.24 -8.86 -37.10 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246445478.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.398 kcal (2) G-P(sol) polarization free energy of solvation -28.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.097 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds