Wall clock time and date at job start Sun Mar 29 2020 21:51:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53008 * 109.46650 * 2 1 4 4 H 1.09004 * 109.46549 * 304.99263 * 3 2 1 5 5 C 1.50701 * 109.46964 * 185.00029 * 3 2 1 6 6 H 1.08003 * 119.99842 * 240.00221 * 5 3 2 7 7 C 1.37882 * 120.00261 * 59.99285 * 5 3 2 8 8 N 1.31519 * 119.99734 * 0.02562 * 7 5 3 9 9 Si 1.86793 * 120.00104 * 180.02562 * 7 5 3 10 10 H 1.48492 * 109.47347 * 60.00085 * 9 7 5 11 11 H 1.48504 * 109.47042 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.47008 * 299.99864 * 9 7 5 13 13 N 1.46897 * 109.47545 * 64.99657 * 3 2 1 14 14 C 1.46901 * 111.00123 * 274.99869 * 13 3 2 15 15 H 1.09000 * 115.56234 * 9.22632 * 14 13 3 16 16 C 1.53203 * 117.56644 * 223.37133 * 14 13 3 17 17 C 1.52109 * 117.52244 * 154.99625 * 14 13 3 18 18 C 1.52652 * 129.73527 * 226.45525 * 17 14 13 19 19 N 1.47656 * 87.65126 * 113.71963 * 18 17 14 20 20 C 1.47659 * 88.13650 * 26.18688 * 19 18 17 21 21 H 1.09006 * 109.47299 * 60.00792 * 1 2 3 22 22 H 1.09004 * 109.47273 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47530 * 300.00491 * 1 2 3 24 24 H 1.08991 * 109.47109 * 239.99704 * 2 1 3 25 25 H 1.08997 * 109.47112 * 119.98966 * 2 1 3 26 26 H 0.97000 * 119.99849 * 179.97438 * 8 7 5 27 27 H 1.00897 * 111.00149 * 151.04400 * 13 3 2 28 28 H 1.09003 * 117.51992 * 145.17510 * 16 14 13 29 29 H 1.08997 * 117.51913 * 0.02562 * 16 14 13 30 30 H 1.09005 * 113.52066 * 359.02543 * 18 17 14 31 31 H 1.08997 * 113.58507 * 228.42635 * 18 17 14 32 32 H 1.00901 * 111.00076 * 137.99713 * 19 18 17 33 33 H 1.08996 * 113.52414 * 88.51123 * 20 19 18 34 34 H 1.09005 * 113.52053 * 219.12097 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9815 -0.8420 5 6 3.5418 1.4445 -0.1238 6 1 4.1471 1.8891 0.6523 7 6 4.1433 0.8785 -1.2279 8 7 3.4062 0.3374 -2.1732 9 14 6.0049 0.8802 -1.3810 10 1 6.5966 0.1456 -0.2342 11 1 6.3978 0.2168 -2.6502 12 1 6.5003 2.2802 -1.3809 13 7 1.6512 2.0994 1.2551 14 6 0.2911 2.6469 1.1636 15 1 -0.2728 2.3597 0.2761 16 6 0.0516 4.0495 1.7315 17 6 -0.4832 2.8262 2.4606 18 6 -1.9216 2.4436 2.7992 19 7 -1.3712 1.4606 3.7536 20 6 -0.1697 2.3119 3.8633 21 1 -0.3634 0.5137 -0.8901 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8899 24 1 1.8933 -0.5138 -0.8899 25 1 1.8933 -0.5137 0.8901 26 1 3.8293 -0.0605 -2.9501 27 1 2.3136 2.8173 1.5078 28 1 -0.6696 4.6847 1.2173 29 1 0.9038 4.5664 2.1728 30 1 -2.4582 1.9883 1.9667 31 1 -2.4852 3.2451 3.2767 32 1 -1.8949 1.4615 4.6161 33 1 -0.2480 3.0776 4.6350 34 1 0.7603 1.7463 3.9215 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001246445478.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:14 Heat of formation + Delta-G solvation = 40.091643 kcal Electronic energy + Delta-G solvation = -14309.898930 eV Core-core repulsion = 12050.635987 eV Total energy + Delta-G solvation = -2259.262943 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.91341 -37.98122 -35.45711 -33.59460 -31.48094 -28.24993 -26.72544 -25.59513 -24.73156 -22.39987 -21.38788 -19.39251 -18.36431 -17.22270 -16.98415 -16.16956 -16.01093 -15.73401 -14.72524 -14.25764 -14.08251 -13.89052 -13.54511 -13.23402 -13.06779 -13.01216 -12.72246 -12.56184 -12.02288 -11.80421 -11.61786 -11.34449 -11.27231 -10.88487 -10.79645 -10.45931 -9.71448 -8.81178 -8.11288 -6.25885 1.42383 1.44498 1.51926 2.41756 2.82672 3.15130 3.27011 3.47179 3.73265 3.96962 4.20083 4.40011 4.57673 4.60019 4.73607 4.74821 4.78335 4.82807 4.90356 5.00589 5.07443 5.12041 5.15968 5.28405 5.36724 5.49291 5.66589 5.71942 5.89263 6.29671 6.49939 6.52593 6.80963 7.02095 7.44050 8.93279 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.047767 B = 0.008012 C = 0.007542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.033934 B = 3494.025444 C = 3711.785015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.099 4.099 3 C 0.229 3.771 4 H -0.029 1.029 5 C -0.541 4.541 6 H 0.058 0.942 7 C 0.014 3.986 8 N -0.915 5.915 9 Si 0.962 3.038 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.270 1.270 13 N -0.650 5.650 14 C 0.049 3.951 15 H 0.092 0.908 16 C -0.176 4.176 17 C -0.164 4.164 18 C 0.048 3.952 19 N -0.638 5.638 20 C 0.050 3.950 21 H 0.032 0.968 22 H 0.041 0.959 23 H 0.065 0.935 24 H 0.060 0.940 25 H 0.023 0.977 26 H 0.262 0.738 27 H 0.333 0.667 28 H 0.109 0.891 29 H 0.100 0.900 30 H 0.074 0.926 31 H 0.093 0.907 32 H 0.328 0.672 33 H 0.085 0.915 34 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.241 6.067 8.864 13.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.137 4.137 3 C 0.121 3.879 4 H -0.012 1.012 5 C -0.580 4.580 6 H 0.077 0.923 7 C -0.185 4.185 8 N -0.554 5.554 9 Si 0.787 3.213 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.195 1.195 13 N -0.279 5.279 14 C -0.062 4.062 15 H 0.110 0.890 16 C -0.215 4.215 17 C -0.166 4.166 18 C -0.082 4.082 19 N -0.263 5.263 20 C -0.080 4.080 21 H 0.051 0.949 22 H 0.060 0.940 23 H 0.084 0.916 24 H 0.078 0.922 25 H 0.042 0.958 26 H 0.071 0.929 27 H 0.152 0.848 28 H 0.127 0.873 29 H 0.118 0.882 30 H 0.093 0.907 31 H 0.111 0.889 32 H 0.142 0.858 33 H 0.103 0.897 34 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -8.198 4.621 8.548 12.713 hybrid contribution 0.909 1.293 -0.461 1.647 sum -7.289 5.915 8.087 12.390 Atomic orbital electron populations 1.21839 0.96940 1.00094 1.00466 1.21340 0.93939 0.98825 0.99639 1.18875 0.93368 0.91176 0.84467 1.01156 1.21600 0.92607 1.38358 1.05405 0.92341 1.25721 1.02801 0.94711 0.95306 1.70024 1.36708 1.38871 1.09837 0.85560 0.80009 0.78454 0.77273 1.19835 1.20930 1.19479 1.60219 1.00939 1.32232 1.34547 1.22293 0.92133 0.96877 0.94917 0.89025 1.23401 1.03632 0.90788 1.03722 1.22368 0.96977 1.02429 0.94822 1.23097 0.93766 0.94332 0.96978 1.67302 1.06278 1.38977 1.13790 1.22920 0.95811 0.94953 0.94309 0.94888 0.94025 0.91609 0.92156 0.95806 0.92866 0.84845 0.87272 0.88198 0.90728 0.88884 0.85848 0.89659 0.91428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.89 8.58 71.98 0.62 -5.27 16 2 C -0.10 -5.06 5.45 30.60 0.17 -4.89 16 3 C 0.23 11.87 2.19 44.17 0.10 11.97 16 4 H -0.03 -1.66 7.73 -2.38 -0.02 -1.68 16 5 C -0.54 -30.14 8.59 25.60 0.22 -29.92 16 6 H 0.06 3.17 7.62 -2.91 -0.02 3.15 16 7 C 0.01 0.78 5.29 84.66 0.45 1.23 16 8 N -0.92 -53.38 11.30 21.45 0.24 -53.13 16 9 Si 0.96 43.89 29.54 68.60 2.03 45.91 16 10 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 11 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 12 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 13 N -0.65 -28.01 6.53 -474.46 -3.10 -31.11 16 14 C 0.05 1.77 4.09 44.69 0.18 1.96 16 15 H 0.09 3.59 6.09 -2.39 -0.01 3.58 16 16 C -0.18 -4.87 10.23 30.37 0.31 -4.56 16 17 C -0.16 -4.72 3.28 -53.00 -0.17 -4.89 16 18 C 0.05 1.15 8.64 83.97 0.73 1.88 16 19 N -0.64 -16.68 8.71 -540.09 -4.70 -21.38 16 20 C 0.05 1.35 8.64 83.97 0.73 2.08 16 21 H 0.03 1.39 7.92 -2.38 -0.02 1.37 16 22 H 0.04 1.65 8.14 -2.38 -0.02 1.63 16 23 H 0.07 2.74 5.75 -2.39 -0.01 2.73 16 24 H 0.06 3.44 5.95 -2.39 -0.01 3.42 16 25 H 0.02 1.24 8.14 -2.39 -0.02 1.22 16 26 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 27 H 0.33 13.95 8.02 -89.70 -0.72 13.23 16 28 H 0.11 2.58 8.14 -2.39 -0.02 2.56 16 29 H 0.10 2.64 8.09 -2.39 -0.02 2.62 16 30 H 0.07 1.88 8.14 -2.38 -0.02 1.86 16 31 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.33 6.56 8.91 -89.69 -0.80 5.76 16 33 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.07 2.20 8.14 -2.38 -0.02 2.18 16 Total: -1.00 -61.36 273.77 -2.64 -64.00 By element: Atomic # 1 Polarization: 26.57 SS G_CDS: -0.43 Total: 26.14 kcal Atomic # 6 Polarization: -33.75 SS G_CDS: 3.32 Total: -30.43 kcal Atomic # 7 Polarization: -98.06 SS G_CDS: -7.56 Total: -105.62 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.91 kcal Total: -61.36 -2.64 -64.00 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246445478.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.089 kcal (2) G-P(sol) polarization free energy of solvation -61.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.997 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds