Wall clock time and date at job start Sun Mar 29 2020 21:50:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47459 * 2 1 4 4 H 1.08990 * 109.47568 * 177.17738 * 3 2 1 5 5 C 1.50701 * 109.46906 * 57.17560 * 3 2 1 6 6 H 1.08005 * 120.00342 * 246.05805 * 5 3 2 7 7 C 1.37874 * 120.00207 * 66.05791 * 5 3 2 8 8 N 1.31517 * 119.99856 * 356.08711 * 7 5 3 9 9 Si 1.86804 * 120.00475 * 175.80711 * 7 5 3 10 10 H 1.48503 * 109.46980 * 89.99856 * 9 7 5 11 11 H 1.48491 * 109.47447 * 210.00100 * 9 7 5 12 12 H 1.48497 * 109.46982 * 330.00336 * 9 7 5 13 13 N 1.46908 * 109.47016 * 297.18049 * 3 2 1 14 14 C 1.48561 * 110.99810 * 83.07999 * 13 3 2 15 15 C 1.54383 * 104.59102 * 200.96197 * 14 13 3 16 16 H 1.08998 * 117.60453 * 244.71637 * 15 14 13 17 17 C 1.52994 * 118.12748 * 87.23162 * 15 14 13 18 18 C 1.52997 * 60.54524 * 268.33072 * 17 15 14 19 19 N 1.46900 * 119.52501 * 248.26349 * 18 17 15 20 20 C 1.48560 * 110.99633 * 327.66267 * 13 3 2 21 21 H 1.09007 * 109.46708 * 69.22168 * 1 2 3 22 22 H 1.09001 * 109.47248 * 189.21493 * 1 2 3 23 23 H 1.08999 * 109.47337 * 309.22243 * 1 2 3 24 24 H 1.09000 * 109.47378 * 239.99513 * 2 1 3 25 25 H 1.09001 * 109.46753 * 119.99564 * 2 1 3 26 26 H 0.97002 * 119.99891 * 5.05879 * 8 7 5 27 27 H 1.08999 * 110.41235 * 319.73579 * 14 13 3 28 28 H 1.08996 * 110.41289 * 82.06678 * 14 13 3 29 29 H 1.08998 * 117.45174 * 15.97915 * 17 15 14 30 30 H 1.09002 * 117.44506 * 160.68315 * 17 15 14 31 31 H 1.00899 * 110.99987 * 250.69532 * 19 18 17 32 32 H 1.00901 * 111.00417 * 14.64715 * 19 18 17 33 33 H 1.08998 * 110.41290 * 277.81876 * 20 13 3 34 34 H 1.08997 * 110.41225 * 40.26131 * 20 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 3.1288 1.4429 0.0506 5 6 1.4814 2.1728 1.1940 6 1 0.7879 2.9885 1.0522 7 6 1.8556 1.7996 2.4674 8 7 2.6391 0.7582 2.6440 9 14 1.2561 2.7779 3.9416 10 1 -0.0301 2.2116 4.4215 11 1 2.2654 2.7043 5.0282 12 1 1.0561 4.1954 3.5468 13 7 1.6069 2.1150 -1.2321 14 6 0.2186 2.6270 -1.0992 15 6 -0.2741 2.7969 -2.5524 16 1 -0.4977 3.8072 -2.8951 17 6 -0.9122 1.5902 -3.2434 18 6 0.5923 1.8296 -3.3850 19 7 1.1443 2.2141 -4.6909 20 6 1.5355 1.1566 -2.3649 21 1 -0.3633 0.3646 -0.9609 22 1 -0.3634 -1.0144 0.1646 23 1 -0.3634 0.6498 0.7961 24 1 1.8934 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 3.0131 0.2970 1.8769 27 1 -0.4034 1.9060 -0.5688 28 1 0.2150 3.5855 -0.5802 29 1 -1.2318 0.7609 -2.6124 30 1 -1.5360 1.7829 -4.1163 31 1 1.6832 1.4610 -5.0916 32 1 0.4129 2.5097 -5.3199 33 1 2.5236 1.0088 -2.8007 34 1 1.1196 0.2055 -2.0325 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001246867867.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:58 Heat of formation + Delta-G solvation = 59.314480 kcal Electronic energy + Delta-G solvation = -14949.613081 eV Core-core repulsion = 12691.183703 eV Total energy + Delta-G solvation = -2258.429378 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.01722 -36.11332 -32.58213 -31.21573 -30.21180 -27.57920 -26.49738 -23.99021 -22.73517 -20.20190 -19.57111 -18.77800 -16.65113 -15.89832 -15.60316 -14.66724 -14.01888 -13.75749 -13.62805 -13.18000 -12.66982 -11.97478 -11.72970 -11.39072 -11.33738 -10.98734 -10.96399 -10.75283 -10.51597 -10.35241 -10.11317 -9.97761 -9.71319 -9.58252 -8.47006 -8.28162 -8.14438 -7.18307 -6.30424 -4.05522 3.42518 3.47705 3.62493 3.93896 4.43655 4.52500 4.79963 5.02066 5.11843 5.36544 5.50919 5.70624 5.84262 5.99933 6.09794 6.11443 6.17299 6.24242 6.30033 6.36465 6.59767 6.74633 6.76287 7.00096 7.15529 7.24980 7.30565 7.35888 7.49755 7.63035 8.10410 8.34820 8.53709 8.88182 9.64320 11.02805 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.048471 B = 0.009886 C = 0.009411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.531149 B = 2831.512040 C = 2974.648134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.158 4.158 3 C 0.188 3.812 4 H 0.035 0.965 5 C -0.588 4.588 6 H 0.060 0.940 7 C 0.021 3.979 8 N -0.914 5.914 9 Si 1.068 2.932 10 H -0.290 1.290 11 H -0.285 1.285 12 H -0.288 1.288 13 N -0.491 5.491 14 C 0.061 3.939 15 C -0.158 4.158 16 H 0.106 0.894 17 C -0.193 4.193 18 C 0.040 3.960 19 N -0.797 5.797 20 C 0.058 3.942 21 H 0.046 0.954 22 H 0.026 0.974 23 H 0.074 0.926 24 H 0.032 0.968 25 H 0.073 0.927 26 H 0.272 0.728 27 H 0.073 0.927 28 H 0.077 0.923 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.342 0.658 32 H 0.338 0.662 33 H 0.071 0.929 34 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.876 -0.276 -9.883 11.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.197 4.197 3 C 0.081 3.919 4 H 0.053 0.947 5 C -0.627 4.627 6 H 0.078 0.922 7 C -0.183 4.183 8 N -0.551 5.551 9 Si 0.897 3.103 10 H -0.216 1.216 11 H -0.211 1.211 12 H -0.214 1.214 13 N -0.215 5.215 14 C -0.066 4.066 15 C -0.178 4.178 16 H 0.124 0.876 17 C -0.233 4.233 18 C -0.054 4.054 19 N -0.324 5.324 20 C -0.071 4.071 21 H 0.064 0.936 22 H 0.045 0.955 23 H 0.093 0.907 24 H 0.050 0.950 25 H 0.091 0.909 26 H 0.085 0.915 27 H 0.091 0.909 28 H 0.095 0.905 29 H 0.109 0.891 30 H 0.109 0.891 31 H 0.156 0.844 32 H 0.150 0.850 33 H 0.090 0.910 34 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.995 0.785 -7.915 9.392 hybrid contribution -1.159 -1.415 -1.972 2.689 sum -6.154 -0.630 -9.886 11.663 Atomic orbital electron populations 1.22062 0.97276 0.99548 1.01412 1.22331 0.95833 1.01523 1.00018 1.19637 0.95953 0.88911 0.87423 0.94739 1.22081 1.29851 1.19248 0.91488 0.92180 1.25709 0.95656 0.96433 1.00516 1.70784 1.31278 1.18052 1.34998 0.83554 0.76056 0.75281 0.75443 1.21645 1.21076 1.21418 1.65756 1.21066 1.29942 1.04729 1.22877 0.90561 1.01747 0.91461 1.23792 1.03020 0.94735 0.96294 0.87568 1.23757 0.96280 1.00558 1.02739 1.22568 0.88768 1.02461 0.91611 1.58366 1.28106 1.42265 1.03637 1.22818 0.97618 0.95561 0.91104 0.93560 0.95485 0.90696 0.94952 0.90886 0.91529 0.90942 0.90474 0.89068 0.89111 0.84423 0.84979 0.91022 0.91697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.03 7.81 37.16 0.29 -2.74 16 2 C -0.16 -3.57 4.81 -26.73 -0.13 -3.70 16 3 C 0.19 4.67 2.51 -68.86 -0.17 4.49 16 4 H 0.03 0.96 7.83 -51.93 -0.41 0.55 16 5 C -0.59 -15.77 6.36 -34.44 -0.22 -15.98 16 6 H 0.06 1.61 5.63 -52.48 -0.30 1.32 16 7 C 0.02 0.59 5.36 -17.82 -0.10 0.49 16 8 N -0.91 -26.65 13.05 55.43 0.72 -25.93 16 9 Si 1.07 24.86 29.91 -169.99 -5.08 19.78 16 10 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 12 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 13 N -0.49 -10.88 5.59 -223.41 -1.25 -12.13 16 14 C 0.06 1.24 4.30 -2.18 -0.01 1.23 16 15 C -0.16 -2.70 7.13 -89.24 -0.64 -3.33 16 16 H 0.11 1.73 8.14 -51.93 -0.42 1.31 16 17 C -0.19 -2.79 9.65 -26.74 -0.26 -3.05 16 18 C 0.04 0.65 3.72 -130.22 -0.48 0.17 16 19 N -0.80 -10.90 9.93 1.85 0.02 -10.88 16 20 C 0.06 1.08 5.18 -2.18 -0.01 1.07 16 21 H 0.05 0.87 2.80 -51.93 -0.15 0.73 16 22 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 23 H 0.07 1.71 6.24 -51.93 -0.32 1.39 16 24 H 0.03 0.67 5.97 -51.93 -0.31 0.36 16 25 H 0.07 1.83 5.72 -51.93 -0.30 1.53 16 26 H 0.27 7.87 5.46 -40.82 -0.22 7.65 16 27 H 0.07 1.51 3.75 -51.93 -0.19 1.32 16 28 H 0.08 1.67 7.02 -51.93 -0.36 1.30 16 29 H 0.09 1.36 6.48 -51.93 -0.34 1.02 16 30 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.34 4.04 9.08 -39.29 -0.36 3.68 16 32 H 0.34 3.83 8.92 -39.29 -0.35 3.48 16 33 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 34 H 0.07 1.22 3.89 -51.93 -0.20 1.02 16 LS Contribution 247.96 15.07 3.74 3.74 Total: -1.00 -29.03 247.96 -7.87 -36.90 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: -4.29 Total: 9.87 kcal Atomic # 6 Polarization: -19.63 SS G_CDS: -1.73 Total: -21.35 kcal Atomic # 7 Polarization: -48.43 SS G_CDS: -0.51 Total: -48.93 kcal Atomic # 14 Polarization: 24.86 SS G_CDS: -5.08 Total: 19.78 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -29.03 -7.87 -36.90 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246867867.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.214 kcal (2) G-P(sol) polarization free energy of solvation -29.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds